{"id":"https://openalex.org/W2885015404","doi":"https://doi.org/10.1093/bioinformatics/bty647","title":"BIPSPI: a method for the prediction of partner-specific protein\u2013protein interfaces","display_name":"BIPSPI: a method for the prediction of partner-specific protein\u2013protein interfaces","publication_year":2018,"publication_date":"2018-07-18","ids":{"openalex":"https://openalex.org/W2885015404","doi":"https://doi.org/10.1093/bioinformatics/bty647","mag":"2885015404","pmid":"https://pubmed.ncbi.nlm.nih.gov/30020406"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty647","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty647","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/3/470/48964865/bioinformatics_35_3_470.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/3/470/48964865/bioinformatics_35_3_470.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045797511","display_name":"Rub\u00e9n S\u00e1nchez-Garc\u00eda","orcid":"https://orcid.org/0000-0001-6156-3542"},"institutions":[{"id":"https://openalex.org/I4210104776","display_name":"Centro Nacional de Biotecnolog\u00eda","ror":"https://ror.org/015w4v032","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210104776"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Ruben Sanchez-Garcia","raw_affiliation_strings":["GN7 of the Spanish National Institute for Bioinformatics (INB), Biocomputing Unit, National Center of Biotechnology (CSIC), Instruct Image Processing Center, Madrid, Spain"],"raw_orcid":"https://orcid.org/0000-0001-6156-3542","affiliations":[{"raw_affiliation_string":"GN7 of the Spanish National Institute for Bioinformatics (INB), Biocomputing Unit, National Center of Biotechnology (CSIC), Instruct Image Processing Center, Madrid, Spain","institution_ids":["https://openalex.org/I4210104776"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007117539","display_name":"Carlos \u00d3scar S. Sorzano","orcid":"https://orcid.org/0000-0002-9473-283X"},"institutions":[{"id":"https://openalex.org/I4210104776","display_name":"Centro Nacional de Biotecnolog\u00eda","ror":"https://ror.org/015w4v032","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210104776"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"C O S Sorzano","raw_affiliation_strings":["GN7 of the Spanish National Institute for Bioinformatics (INB), Biocomputing Unit, National Center of Biotechnology (CSIC), Instruct Image Processing Center, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"GN7 of the Spanish National Institute for Bioinformatics (INB), Biocomputing Unit, National Center of Biotechnology (CSIC), Instruct Image Processing Center, Madrid, Spain","institution_ids":["https://openalex.org/I4210104776"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046960969","display_name":"J.M. Carazo","orcid":"https://orcid.org/0000-0003-0788-8447"},"institutions":[{"id":"https://openalex.org/I4210104776","display_name":"Centro Nacional de Biotecnolog\u00eda","ror":"https://ror.org/015w4v032","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210104776"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"J M Carazo","raw_affiliation_strings":["GN7 of the Spanish National Institute for Bioinformatics (INB), Biocomputing Unit, National Center of Biotechnology (CSIC), Instruct Image Processing Center, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"GN7 of the Spanish National Institute for Bioinformatics (INB), Biocomputing Unit, National Center of Biotechnology (CSIC), Instruct Image Processing Center, Madrid, Spain","institution_ids":["https://openalex.org/I4210104776"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5007270631","display_name":"Joan Segura","orcid":"https://orcid.org/0000-0001-5593-735X"},"institutions":[{"id":"https://openalex.org/I4210104776","display_name":"Centro Nacional de Biotecnolog\u00eda","ror":"https://ror.org/015w4v032","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210104776"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Joan Segura","raw_affiliation_strings":["GN7 of the Spanish National Institute for Bioinformatics (INB), Biocomputing Unit, National Center of Biotechnology (CSIC), Instruct Image Processing Center, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"GN7 of the Spanish National Institute for Bioinformatics (INB), Biocomputing Unit, National Center of Biotechnology (CSIC), Instruct Image Processing Center, Madrid, Spain","institution_ids":["https://openalex.org/I4210104776"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5007270631","https://openalex.org/A5045797511"],"corresponding_institution_ids":["https://openalex.org/I4210104776"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":{"value":3989,"currency":"USD","value_usd":3989},"fwci":3.8722,"has_fulltext":true,"cited_by_count":111,"citation_normalized_percentile":{"value":0.94891719,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"35","issue":"3","first_page":"470","last_page":"477"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.5473999977111816,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.5473999977111816,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.30219998955726624,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.025699999183416367,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6639605164527893},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40727975964546204},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2135618031024933}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6639605164527893},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40727975964546204},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2135618031024933}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/bty647","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty647","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/3/470/48964865/bioinformatics_35_3_470.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:6361243","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6361243","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmid:30020406","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30020406","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:5356734","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6361243","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:digital.csic.es:10261/240066","is_oa":true,"landing_page_url":"http://hdl.handle.net/10261/240066","pdf_url":null,"source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"http://purl.org/coar/resource_type/c_6501"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty647","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty647","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/3/470/48964865/bioinformatics_35_3_470.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.46000000834465027}],"awards":[{"id":"https://openalex.org/G1276305609","display_name":null,"funder_award_id":"AIC\u2013A\u20132011\u20130638","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G1892157767","display_name":null,"funder_award_id":"PT17/0009/0010","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"},{"id":"https://openalex.org/G2892729","display_name":null,"funder_award_id":"676559","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"},{"id":"https://openalex.org/G4435369794","display_name":null,"funder_award_id":"B2017","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G5830402311","display_name":null,"funder_award_id":"PT13/0001","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"},{"id":"https://openalex.org/G5967282749","display_name":null,"funder_award_id":"BIO2016-76400-R","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G6657082368","display_name":null,"funder_award_id":"BIO2013-44647-R","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"},{"id":"https://openalex.org/G6741787527","display_name":null,"funder_award_id":"PT13/0001)","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G7267176529","display_name":null,"funder_award_id":"B2017/BMD\u20103817","funder_id":"https://openalex.org/F4320313831","funder_display_name":"Comunidad de Madrid"},{"id":"https://openalex.org/G801603056","display_name":null,"funder_award_id":"PT13/0001/0009","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G8245241332","display_name":null,"funder_award_id":"BIO2013-44647-R","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G8414202094","display_name":null,"funder_award_id":"FPU15/00264","funder_id":"https://openalex.org/F4320321764","funder_display_name":"Ministerio de Educaci\u00f3n, Cultura y Deporte"},{"id":"https://openalex.org/G8830453222","display_name":null,"funder_award_id":"B2017/BMD-3817","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"},{"id":"https://openalex.org/G893984613","display_name":null,"funder_award_id":"PT13/0001/0009","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"},{"id":"https://openalex.org/G941088178","display_name":null,"funder_award_id":"AIC-A-2011-0638","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"}],"funders":[{"id":"https://openalex.org/F4320313831","display_name":"Comunidad de Madrid","ror":null},{"id":"https://openalex.org/F4320315254","display_name":"Innovative Research Group Project of the National Natural Science Foundation of China","ror":null},{"id":"https://openalex.org/F4320321764","display_name":"Ministerio de Educaci\u00f3n, Cultura y Deporte","ror":"https://ror.org/03nc27g21"},{"id":"https://openalex.org/F4320321837","display_name":"Ministerio de Econom\u00eda y Competitividad","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320332999","display_name":"Horizon 2020 Framework Programme","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320334923","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886"},{"id":"https://openalex.org/F4320335598","display_name":"Agencia Estatal de Investigaci\u00f3n","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2885015404.pdf","grobid_xml":"https://content.openalex.org/works/W2885015404.grobid-xml"},"referenced_works_count":54,"referenced_works":["https://openalex.org/W1030883578","https://openalex.org/W1545810434","https://openalex.org/W1597125737","https://openalex.org/W1964084224","https://openalex.org/W1965379872","https://openalex.org/W1969842170","https://openalex.org/W2008708467","https://openalex.org/W2009212164","https://openalex.org/W2012942264","https://openalex.org/W2019559527","https://openalex.org/W2031603364","https://openalex.org/W2043699100","https://openalex.org/W2047468595","https://openalex.org/W2054291744","https://openalex.org/W2057385367","https://openalex.org/W2060791849","https://openalex.org/W2073229442","https://openalex.org/W2100908214","https://openalex.org/W2101803429","https://openalex.org/W2103729016","https://openalex.org/W2107867854","https://openalex.org/W2109300715","https://openalex.org/W2110943691","https://openalex.org/W2114850508","https://openalex.org/W2118397523","https://openalex.org/W2125223451","https://openalex.org/W2127771490","https://openalex.org/W2128653811","https://openalex.org/W2137167381","https://openalex.org/W2141627824","https://openalex.org/W2144627403","https://openalex.org/W2149640119","https://openalex.org/W2155194485","https://openalex.org/W2158714788","https://openalex.org/W2162259397","https://openalex.org/W2162682281","https://openalex.org/W2162793769","https://openalex.org/W2166701319","https://openalex.org/W2252309331","https://openalex.org/W2272192610","https://openalex.org/W2295598076","https://openalex.org/W2395745621","https://openalex.org/W2405504822","https://openalex.org/W2473226680","https://openalex.org/W2580698119","https://openalex.org/W2619280902","https://openalex.org/W2739649859","https://openalex.org/W2751808960","https://openalex.org/W2774836764","https://openalex.org/W2782153240","https://openalex.org/W2911964244","https://openalex.org/W2915344963","https://openalex.org/W3102476541","https://openalex.org/W6743410771"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052","https://openalex.org/W2382290278","https://openalex.org/W4395014643"],"abstract_inverted_index":{"Motivation:":[0],"Protein-Protein":[1,129],"Interactions":[2],"(PPI)":[3],"are":[4,29,36,196],"essentials":[5],"for":[6,31,73],"most":[7,82],"cellular":[8],"processes":[9],"and":[10,41,116,134,170],"thus,":[11],"unveiling":[12],"how":[13],"proteins":[14,97],"interact":[15],"is":[16,175,182,188],"a":[17,68,93,100,142,160],"crucial":[18],"question":[19],"that":[20],"can":[21],"be":[22],"better":[23],"understood":[24],"by":[25,159],"identifying":[26],"which":[27,55],"residues":[28,56],"responsible":[30],"the":[32,59,74,87,128],"interaction.":[33,63],"Computational":[34],"approaches":[35],"orders":[37],"of":[38,49,61,76,95,123,153],"magnitude":[39],"cheaper":[40],"faster":[42],"than":[43,99],"experimental":[44],"ones,":[45],"leading":[46],"to":[47,53,58,81,105],"proliferation":[48],"multiple":[50],"methods":[51],"aimed":[52],"predict":[54,106],"belong":[57],"interface":[60],"an":[62,136],"Results:":[64],"We":[65],"present":[66],"BIPSPI,":[67],"new":[69],"machine":[70],"learning-based":[71],"method":[72],"prediction":[75,85],"partner-specific":[77,107],"PPI":[78],"sites.":[79,109],"Contrary":[80],"binding":[83,108],"site":[84],"methods,":[86],"proposed":[88],"approach":[89,155],"takes":[90],"into":[91],"account":[92],"pair":[94],"interacting":[96],"rather":[98],"single":[101],"one":[102],"in":[103,127,135],"order":[104],"BIPSPI":[110,172,180],"has":[111,148,156],"been":[112,149,157],"trained":[113,144],"employing":[114],"sequence-based":[115],"structural":[117],"features":[118],"from":[119],"both":[120],"protein":[121],"partners":[122],"each":[124],"complex":[125],"compiled":[126],"Docking":[130],"Benchmark":[131],"version":[132,143],"5.0":[133],"additional":[137],"set":[138],"independently":[139],"compiled.":[140],"Also,":[141],"only":[145],"on":[146],"sequences":[147],"developed.":[150],"The":[151],"performance":[152],"our":[154],"assessed":[158],"leave-one-out":[161],"cross-validation":[162],"over":[163],"different":[164],"benchmarks,":[165],"outperforming":[166],"state-of-the-art":[167],"methods.":[168],"Availability":[169],"implementation:":[171],"web":[173],"server":[174],"freely":[176],"available":[177,183,189,197],"at":[178,184,190,198],"http://bipspi.cnb.csic.es.":[179],"code":[181],"https://github.com/bioinsilico/BIPSPI.":[185],"Docker":[186],"image":[187],"https://hub.docker.com/r/bioinsilico/bipspi/.":[191],"Supplementary":[192,194],"information:":[193],"data":[195],"Bioinformatics":[199],"online.":[200]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":14},{"year":2023,"cited_by_count":18},{"year":2022,"cited_by_count":19},{"year":2021,"cited_by_count":21},{"year":2020,"cited_by_count":21},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1}],"updated_date":"2026-08-27T14:10:00.468798","created_date":"2025-10-10T00:00:00"}
