{"id":"https://openalex.org/W2884459637","doi":"https://doi.org/10.1093/bioinformatics/bty622","title":"SPUTNIK: an R package for filtering of spatially related peaks in mass spectrometry imaging data","display_name":"SPUTNIK: an R package for filtering of spatially related peaks in mass spectrometry imaging data","publication_year":2018,"publication_date":"2018-07-13","ids":{"openalex":"https://openalex.org/W2884459637","doi":"https://doi.org/10.1093/bioinformatics/bty622","mag":"2884459637","pmid":"https://pubmed.ncbi.nlm.nih.gov/30010780"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty622","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty622","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/1/178/28765828/bty622.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/1/178/28765828/bty622.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103231615","display_name":"Paolo Inglese","orcid":"https://orcid.org/0000-0001-6179-9643"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Paolo Inglese","raw_affiliation_strings":["Computational and System Medicine, Department of Surgery and Cancer, Imperial College London, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational and System Medicine, Department of Surgery and Cancer, Imperial College London, London, UK","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040049750","display_name":"Gon\u00e7alo dos Santos Correia","orcid":"https://orcid.org/0000-0001-8271-9294"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Gon\u00e7alo Correia","raw_affiliation_strings":["Computational and System Medicine, Department of Surgery and Cancer, Imperial College London, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational and System Medicine, Department of Surgery and Cancer, Imperial College London, London, UK","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048603885","display_name":"Zolt\u00e1n Tak\u00e1ts","orcid":"https://orcid.org/0000-0002-0795-3467"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Zoltan Takats","raw_affiliation_strings":["Computational and System Medicine, Department of Surgery and Cancer, Imperial College London, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational and System Medicine, Department of Surgery and Cancer, Imperial College London, London, UK","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018207002","display_name":"Jeremy K. Nicholson","orcid":"https://orcid.org/0000-0002-8123-8349"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jeremy K Nicholson","raw_affiliation_strings":["Computational and System Medicine, Department of Surgery and Cancer, Imperial College London, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational and System Medicine, Department of Surgery and Cancer, Imperial College London, London, UK","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014283781","display_name":"Robert C. Glen","orcid":"https://orcid.org/0000-0003-1759-2914"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Robert C Glen","raw_affiliation_strings":["Computational and System Medicine, Department of Surgery and Cancer, Imperial College London, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational and System Medicine, Department of Surgery and Cancer, Imperial College London, London, UK","institution_ids":["https://openalex.org/I47508984"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5014283781","https://openalex.org/A5103231615"],"corresponding_institution_ids":["https://openalex.org/I47508984"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.1598,"has_fulltext":false,"cited_by_count":26,"citation_normalized_percentile":{"value":0.74523718,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"35","issue":"1","first_page":"178","last_page":"180"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.4352000057697296,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.4352000057697296,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.22169999778270721,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.16580000519752502,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mass-spectrometry-imaging","display_name":"Mass spectrometry imaging","score":0.6704209446907043},{"id":"https://openalex.org/keywords/mass-spectrometry","display_name":"Mass spectrometry","score":0.6667949557304382},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.6287602782249451},{"id":"https://openalex.org/keywords/software-package","display_name":"Software package","score":0.5344034433364868},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5236803293228149},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4180294871330261},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.3556787371635437},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.25455477833747864},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.24174699187278748},{"id":"https://openalex.org/keywords/chromatography","display_name":"Chromatography","score":0.1802102029323578},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08473888039588928}],"concepts":[{"id":"https://openalex.org/C24066741","wikidata":"https://www.wikidata.org/wiki/Q3796564","display_name":"Mass spectrometry imaging","level":3,"score":0.6704209446907043},{"id":"https://openalex.org/C162356407","wikidata":"https://www.wikidata.org/wiki/Q180809","display_name":"Mass spectrometry","level":2,"score":0.6667949557304382},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.6287602782249451},{"id":"https://openalex.org/C3020440742","wikidata":"https://www.wikidata.org/wiki/Q1176855","display_name":"Software package","level":3,"score":0.5344034433364868},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5236803293228149},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4180294871330261},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.3556787371635437},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.25455477833747864},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.24174699187278748},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.1802102029323578},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08473888039588928}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/bty622","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty622","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/1/178/28765828/bty622.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30010780","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30010780","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:6298046","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6298046","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:spiral.imperial.ac.uk:10044/1/62343","is_oa":true,"landing_page_url":"http://hdl.handle.net/10044/1/62343","pdf_url":null,"source":{"id":"https://openalex.org/S4306401396","display_name":"Spiral (Imperial College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I47508984","host_organization_name":"Imperial College London","host_organization_lineage":["https://openalex.org/I47508984"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"180","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty622","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty622","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/1/178/28765828/bty622.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.44999998807907104}],"awards":[{"id":"https://openalex.org/G8101666146","display_name":null,"funder_award_id":"25038","funder_id":"https://openalex.org/F4320319985","funder_display_name":"Cancer Research UK"}],"funders":[{"id":"https://openalex.org/F4320319985","display_name":"Cancer Research UK","ror":"https://ror.org/054225q67"},{"id":"https://openalex.org/F4320319990","display_name":"National Institute for Health and Care Research","ror":"https://ror.org/0187kwz08"},{"id":"https://openalex.org/F4320319994","display_name":"Department of Health and Social Care","ror":"https://ror.org/03sbpja79"},{"id":"https://openalex.org/F4320320284","display_name":"Imperial College Healthcare NHS Trust","ror":"https://ror.org/056ffv270"},{"id":"https://openalex.org/F4320336039","display_name":"NIHR Imperial Biomedical Research Centre","ror":"https://ror.org/01kmhx639"},{"id":"https://openalex.org/F7017704138","display_name":"Niilo Helanderin S\u00e4\u00e4ti\u00f6","ror":null}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2884459637.pdf"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W68126573","https://openalex.org/W1818937361","https://openalex.org/W2002830978","https://openalex.org/W2042850156","https://openalex.org/W2049763161","https://openalex.org/W2073296628","https://openalex.org/W2111854888","https://openalex.org/W2132514608","https://openalex.org/W2133059825","https://openalex.org/W2133665775","https://openalex.org/W2147214095","https://openalex.org/W2150573935","https://openalex.org/W2553654192","https://openalex.org/W2556219511","https://openalex.org/W6602799961","https://openalex.org/W6680096826"],"related_works":["https://openalex.org/W2848875961","https://openalex.org/W3123649766","https://openalex.org/W2017871508","https://openalex.org/W3164234280","https://openalex.org/W2389393514","https://openalex.org/W2809209109","https://openalex.org/W4386428113","https://openalex.org/W2048919949","https://openalex.org/W1553392826","https://openalex.org/W232181771"],"abstract_inverted_index":{"Summary:":[0],"SPUTNIK":[1,26,61],"is":[2,62,74,85],"an":[3],"R":[4],"package":[5,73],"consisting":[6],"of":[7,10,41,46,54],"a":[8,20,35],"series":[9],"tools":[11],"to":[12],"filter":[13],"mass":[14,29],"spectrometry":[15,30],"imaging":[16,31],"peaks":[17],"characterized":[18,33],"by":[19,34,87],"noisy":[21],"or":[22],"unlikely":[23],"spatial":[24],"distribution.":[25],"can":[27],"produce":[28],"datasets":[32],"smaller":[36],"but":[37],"more":[38],"informative":[39],"set":[40],"peaks,":[42],"reduce":[43],"the":[44,52,55,77],"complexity":[45],"subsequent":[47],"multi-variate":[48],"analysis":[49],"and":[50,59,69,84,90],"increase":[51],"interpretability":[53],"statistical":[56],"results.":[57],"Availability":[58],"implementation:":[60],"freely":[63],"available":[64,97],"online":[65],"from":[66],"CRAN":[67],"repository":[68],"at":[70,98],"https://github.com/paoloinglese/SPUTNIK.":[71],"The":[72],"distributed":[75],"under":[76],"GNU":[78],"General":[79],"Public":[80],"License":[81],"version":[82],"3":[83],"accompanied":[86],"example":[88],"files":[89],"data.":[91],"Supplementary":[92,94],"information:":[93],"data":[95],"are":[96],"Bioinformatics":[99],"online.":[100]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":4},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1}],"updated_date":"2026-05-22T06:13:13.366637","created_date":"2025-10-10T00:00:00"}
