{"id":"https://openalex.org/W2890132714","doi":"https://doi.org/10.1093/bioinformatics/bty600","title":"A deep neural network approach for learning intrinsic protein-RNA binding preferences","display_name":"A deep neural network approach for learning intrinsic protein-RNA binding preferences","publication_year":2018,"publication_date":"2018-07-05","ids":{"openalex":"https://openalex.org/W2890132714","doi":"https://doi.org/10.1093/bioinformatics/bty600","mag":"2890132714","pmid":"https://pubmed.ncbi.nlm.nih.gov/30423078"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty600","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty600","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/17/i638/25702404/bty600.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/17/i638/25702404/bty600.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003229892","display_name":"Ilan Ben-Bassat","orcid":null},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Ilan Ben-Bassat","raw_affiliation_strings":["Blavatnik School of Computer Science, Tel-Aviv University, Tel-Aviv, Israel"],"affiliations":[{"raw_affiliation_string":"Blavatnik School of Computer Science, Tel-Aviv University, Tel-Aviv, Israel","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059847817","display_name":"Benny Chor","orcid":null},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Benny Chor","raw_affiliation_strings":["Blavatnik School of Computer Science, Tel-Aviv University, Tel-Aviv, Israel"],"affiliations":[{"raw_affiliation_string":"Blavatnik School of Computer Science, Tel-Aviv University, Tel-Aviv, Israel","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037786810","display_name":"Yaron Orenstein","orcid":"https://orcid.org/0000-0002-3583-3112"},"institutions":[{"id":"https://openalex.org/I124227911","display_name":"Ben-Gurion University of the Negev","ror":"https://ror.org/05tkyf982","country_code":"IL","type":"education","lineage":["https://openalex.org/I124227911"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"Yaron Orenstein","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Ben-Gurion University of the Negev, Beer-Sheva, Israel"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Ben-Gurion University of the Negev, Beer-Sheva, Israel","institution_ids":["https://openalex.org/I124227911"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5037786810"],"corresponding_institution_ids":["https://openalex.org/I124227911"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":4.9346,"has_fulltext":true,"cited_by_count":94,"citation_normalized_percentile":{"value":0.96305373,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"34","issue":"17","first_page":"i638","last_page":"i646"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.7073837518692017},{"id":"https://openalex.org/keywords/rna-binding-protein","display_name":"RNA-binding protein","score":0.6475344300270081},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6051012277603149},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5374508500099182},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5148926973342896},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.49071204662323},{"id":"https://openalex.org/keywords/rna-splicing","display_name":"RNA splicing","score":0.4416259825229645},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.36792585253715515},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3441063165664673},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.19417107105255127},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18074238300323486}],"concepts":[{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.7073837518692017},{"id":"https://openalex.org/C41282012","wikidata":"https://www.wikidata.org/wiki/Q3928341","display_name":"RNA-binding protein","level":4,"score":0.6475344300270081},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6051012277603149},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5374508500099182},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5148926973342896},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.49071204662323},{"id":"https://openalex.org/C54458228","wikidata":"https://www.wikidata.org/wiki/Q237218","display_name":"RNA splicing","level":4,"score":0.4416259825229645},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.36792585253715515},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3441063165664673},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19417107105255127},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18074238300323486}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bty600","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty600","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/17/i638/25702404/bty600.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30423078","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30423078","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty600","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty600","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/17/i638/25702404/bty600.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.41999998688697815,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2890132714.pdf","grobid_xml":"https://content.openalex.org/works/W2890132714.grobid-xml"},"referenced_works_count":60,"referenced_works":["https://openalex.org/W1019830208","https://openalex.org/W1501531009","https://openalex.org/W1522301498","https://openalex.org/W1559047570","https://openalex.org/W1840435438","https://openalex.org/W1951403192","https://openalex.org/W1974454061","https://openalex.org/W1978883675","https://openalex.org/W2003993220","https://openalex.org/W2006880437","https://openalex.org/W2010615446","https://openalex.org/W2019381697","https://openalex.org/W2033169664","https://openalex.org/W2040356728","https://openalex.org/W2040870580","https://openalex.org/W2053003053","https://openalex.org/W2064675550","https://openalex.org/W2081164083","https://openalex.org/W2082102894","https://openalex.org/W2086561953","https://openalex.org/W2101025813","https://openalex.org/W2103375140","https://openalex.org/W2105694586","https://openalex.org/W2112796928","https://openalex.org/W2127982146","https://openalex.org/W2130942839","https://openalex.org/W2132863465","https://openalex.org/W2144015117","https://openalex.org/W2148032724","https://openalex.org/W2149769193","https://openalex.org/W2157331557","https://openalex.org/W2163605009","https://openalex.org/W2198606573","https://openalex.org/W2257979135","https://openalex.org/W2307041907","https://openalex.org/W2345512687","https://openalex.org/W2419834209","https://openalex.org/W2433743436","https://openalex.org/W2502949459","https://openalex.org/W2522935375","https://openalex.org/W2560785030","https://openalex.org/W2592216350","https://openalex.org/W2691563344","https://openalex.org/W2737196618","https://openalex.org/W2893045341","https://openalex.org/W2950463913","https://openalex.org/W2962883796","https://openalex.org/W2964121744","https://openalex.org/W3100172986","https://openalex.org/W4236965008","https://openalex.org/W4255885670","https://openalex.org/W6631190155","https://openalex.org/W6638957358","https://openalex.org/W6653050037","https://openalex.org/W6679436768","https://openalex.org/W6683258052","https://openalex.org/W6684191040","https://openalex.org/W6727576751","https://openalex.org/W6754932163","https://openalex.org/W6765897598"],"related_works":["https://openalex.org/W4375867731","https://openalex.org/W4224241862","https://openalex.org/W2889547007","https://openalex.org/W1510729279","https://openalex.org/W2611989081","https://openalex.org/W4380075502","https://openalex.org/W2024593827","https://openalex.org/W1976100904","https://openalex.org/W2944144358","https://openalex.org/W2569356794"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":11},{"year":2022,"cited_by_count":14},{"year":2021,"cited_by_count":23},{"year":2020,"cited_by_count":19},{"year":2019,"cited_by_count":7},{"year":2017,"cited_by_count":1}],"updated_date":"2026-03-06T13:50:29.536080","created_date":"2025-10-10T00:00:00"}
