{"id":"https://openalex.org/W2892055372","doi":"https://doi.org/10.1093/bioinformatics/bty563","title":"Conditional generative adversarial network for gene expression inference","display_name":"Conditional generative adversarial network for gene expression inference","publication_year":2018,"publication_date":"2018-07-07","ids":{"openalex":"https://openalex.org/W2892055372","doi":"https://doi.org/10.1093/bioinformatics/bty563","mag":"2892055372","pmid":"https://pubmed.ncbi.nlm.nih.gov/30423066"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty563","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty563","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/17/i603/25702278/bty563.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/17/i603/25702278/bty563.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100713981","display_name":"Xiaoqian Wang","orcid":"https://orcid.org/0000-0002-4424-6024"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiaoqian Wang","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Pittsburgh, Pittsburgh, PA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Pittsburgh, Pittsburgh, PA, USA","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025215650","display_name":"Kamran Ghasedi Dizaji","orcid":null},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kamran Ghasedi Dizaji","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Pittsburgh, Pittsburgh, PA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Pittsburgh, Pittsburgh, PA, USA","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060016795","display_name":"Heng Huang","orcid":"https://orcid.org/0000-0002-3483-8333"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Heng Huang","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Pittsburgh, Pittsburgh, PA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Pittsburgh, Pittsburgh, PA, USA","institution_ids":["https://openalex.org/I170201317"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5060016795"],"corresponding_institution_ids":["https://openalex.org/I170201317"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":4.0813,"has_fulltext":false,"cited_by_count":65,"citation_normalized_percentile":{"value":0.95060249,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"34","issue":"17","first_page":"i603","last_page":"i611"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.429500013589859,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.429500013589859,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.16750000417232513,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.11309999972581863,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.7598005533218384},{"id":"https://openalex.org/keywords/generative-grammar","display_name":"Generative grammar","score":0.7534894943237305},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6198686361312866},{"id":"https://openalex.org/keywords/generative-adversarial-network","display_name":"Generative adversarial network","score":0.5665075778961182},{"id":"https://openalex.org/keywords/adversarial-system","display_name":"Adversarial system","score":0.533029317855835},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.531116247177124},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.5057451725006104},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.434505820274353},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3524542450904846},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23234689235687256},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.17583724856376648},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08669251203536987}],"concepts":[{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.7598005533218384},{"id":"https://openalex.org/C39890363","wikidata":"https://www.wikidata.org/wiki/Q36108","display_name":"Generative grammar","level":2,"score":0.7534894943237305},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6198686361312866},{"id":"https://openalex.org/C2988773926","wikidata":"https://www.wikidata.org/wiki/Q25104379","display_name":"Generative adversarial network","level":3,"score":0.5665075778961182},{"id":"https://openalex.org/C37736160","wikidata":"https://www.wikidata.org/wiki/Q1801315","display_name":"Adversarial system","level":2,"score":0.533029317855835},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.531116247177124},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.5057451725006104},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.434505820274353},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3524542450904846},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23234689235687256},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.17583724856376648},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08669251203536987}],"mesh":[{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016014","descriptor_name":"Linear Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016014","descriptor_name":"Linear Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016014","descriptor_name":"Linear Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bty563","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty563","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/17/i603/25702278/bty563.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30423066","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30423066","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:5675858","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6129263","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty563","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty563","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/17/i603/25702278/bty563.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.4399999976158142,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G3559141165","display_name":null,"funder_award_id":"DBI 1356628","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G37673707","display_name":null,"funder_award_id":"IIS 1619308","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6134515427","display_name":null,"funder_award_id":"R01 AG049371","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7136375676","display_name":null,"funder_award_id":"IIS 1344152","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7762013212","display_name":null,"funder_award_id":"IIS 1633753","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G942013628","display_name":null,"funder_award_id":"IIS 1302675","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":66,"referenced_works":["https://openalex.org/W398859631","https://openalex.org/W1522301498","https://openalex.org/W1533861849","https://openalex.org/W1544009106","https://openalex.org/W1552434751","https://openalex.org/W1665214252","https://openalex.org/W1787224781","https://openalex.org/W1836465849","https://openalex.org/W1904365287","https://openalex.org/W1964655247","https://openalex.org/W2018838463","https://openalex.org/W2020541351","https://openalex.org/W2022495797","https://openalex.org/W2060356473","https://openalex.org/W2085963386","https://openalex.org/W2097117768","https://openalex.org/W2098967508","https://openalex.org/W2108101947","https://openalex.org/W2117130368","https://openalex.org/W2139967559","https://openalex.org/W2146502635","https://openalex.org/W2160815625","https://openalex.org/W2162563329","https://openalex.org/W2187341651","https://openalex.org/W2194775991","https://openalex.org/W2248556341","https://openalex.org/W2264017649","https://openalex.org/W2271343396","https://openalex.org/W2342807339","https://openalex.org/W2393319904","https://openalex.org/W2527229715","https://openalex.org/W2533012945","https://openalex.org/W2552465644","https://openalex.org/W2560674852","https://openalex.org/W2593414223","https://openalex.org/W2595840341","https://openalex.org/W2597851033","https://openalex.org/W2625219738","https://openalex.org/W2752843037","https://openalex.org/W2766527293","https://openalex.org/W2768977980","https://openalex.org/W2950420695","https://openalex.org/W2951482750","https://openalex.org/W2962793481","https://openalex.org/W2963073614","https://openalex.org/W2963341071","https://openalex.org/W2963446712","https://openalex.org/W2964137095","https://openalex.org/W4294643831","https://openalex.org/W4297772798","https://openalex.org/W6621378261","https://openalex.org/W6631190155","https://openalex.org/W6631943919","https://openalex.org/W6637242042","https://openalex.org/W6638667902","https://openalex.org/W6640036494","https://openalex.org/W6681435938","https://openalex.org/W6684191040","https://openalex.org/W6691096134","https://openalex.org/W6695676441","https://openalex.org/W6718379498","https://openalex.org/W6725739302","https://openalex.org/W6729966448","https://openalex.org/W6739246803","https://openalex.org/W6744128701","https://openalex.org/W6745560452"],"related_works":["https://openalex.org/W2381031055","https://openalex.org/W2366070815","https://openalex.org/W2888032422","https://openalex.org/W2996316059","https://openalex.org/W3178813832","https://openalex.org/W4385421777","https://openalex.org/W4377980832","https://openalex.org/W2897769091","https://openalex.org/W2971552217","https://openalex.org/W2969215546"],"abstract_inverted_index":{"Motivation:":[0],"The":[1],"rapid":[2],"progress":[3],"of":[4,12,38,67,75,89,96,107,119,132,140,198],"gene":[5,20,39,161,200],"expression":[6,21,40,65,118,139,201],"profiling":[7,41,47,125],"has":[8],"facilitated":[9],"the":[10,35,64,83,87,108,117,130,138,153,157,181,196,214,224,235,265],"prosperity":[11],"recent":[13],"biological":[14],"studies":[15,57],"in":[16,44,48,63,160,220],"various":[17,24],"fields,":[18],"where":[19],"data":[22],"characterizes":[23],"cell":[25],"conditions":[26],"and":[27,42,54,111,135,216,226,238,246,257,260],"regulatory":[28,162],"mechanisms":[29],"under":[30,253],"different":[31,68,255],"experimental":[32],"circumstances.":[33],"Despite":[34],"widespread":[36],"application":[37],"advances":[43],"high-throughput":[45],"technologies,":[46],"genome-wide":[49],"level":[50],"is":[51],"still":[52],"expensive":[53],"difficult.":[55],"Previous":[56],"found":[58],"that":[59,71,103],"high":[60,170],"correlation":[61],"exists":[62],"pattern":[66],"genes,":[69],"such":[70],"a":[72,94,123,166,191,205],"small":[73],"subset":[74],"genes":[76,99,134,143],"can":[77,112],"be":[78,113],"informative":[79],"to":[80,115,155,179,243],"approximately":[81],"describe":[82],"entire":[84],"transcriptome.":[85],"In":[86,186],"Library":[88],"Integrated":[90],"Network-based":[91],"Cell-Signature":[92],"program,":[93],"set":[95],"\u223c1000":[97],"landmark":[98,133],"have":[100,152],"been":[101],"identified":[102],"contain":[104],"\u223c80%":[105],"information":[106],"whole":[109],"genome":[110],"used":[114],"predict":[116],"remaining":[120],"genes.":[121,185],"For":[122],"cost-effective":[124],"strategy,":[126],"traditional":[127],"methods":[128],"measure":[129],"profiles":[131],"then":[136],"infer":[137],"other":[141],"target":[142,199],"via":[144],"linear":[145,148],"models.":[146],"However,":[147],"models":[149,175],"do":[150],"not":[151],"capacity":[154],"capture":[156],"non-linear":[158],"associations":[159],"networks.":[163],"Results:":[164],"As":[165],"flexible":[167],"model":[168],"with":[169],"representative":[171],"power,":[172],"deep":[173,192],"learning":[174,193],"provide":[176],"an":[177],"alternate":[178],"interpret":[180],"complex":[182],"relation":[183],"among":[184],"this":[187],"paper,":[188],"we":[189],"propose":[190],"architecture":[194],"for":[195],"inference":[197],"profiles.":[202],"We":[203,249],"construct":[204],"novel":[206],"conditional":[207],"generative":[208],"adversarial":[209,215,237],"network":[210],"by":[211,230],"incorporating":[212],"both":[213],"\u21131-norm":[217,239],"loss":[218,240],"terms":[219],"our":[221,251],"model.":[222],"Unlike":[223],"smooth":[225],"blurry":[227],"predictions":[228],"resulted":[229],"mean":[231],"squared":[232],"error":[233],"objective,":[234],"coupled":[236],"function":[241],"leads":[242],"more":[244],"accurate":[245],"sharp":[247],"predictions.":[248],"validate":[250],"method":[252],"two":[254],"settings":[256],"find":[258],"consistent":[259],"significant":[261],"improvements":[262],"over":[263],"all":[264],"comparing":[266],"methods.":[267]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":18},{"year":2020,"cited_by_count":17},{"year":2019,"cited_by_count":7}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
