{"id":"https://openalex.org/W2892055372","doi":"https://doi.org/10.1093/bioinformatics/bty563","title":"Conditional generative adversarial network for gene expression inference","display_name":"Conditional generative adversarial network for gene expression inference","publication_year":2018,"publication_date":"2018-07-07","ids":{"openalex":"https://openalex.org/W2892055372","doi":"https://doi.org/10.1093/bioinformatics/bty563","mag":"2892055372","pmid":"https://pubmed.ncbi.nlm.nih.gov/30423066"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty563","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty563","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/17/i603/25702278/bty563.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/17/i603/25702278/bty563.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100713981","display_name":"Xiaoqian Wang","orcid":"https://orcid.org/0000-0002-4424-6024"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiaoqian Wang","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Pittsburgh, Pittsburgh, PA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Pittsburgh, Pittsburgh, PA, USA","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025215650","display_name":"Kamran Ghasedi Dizaji","orcid":null},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kamran Ghasedi Dizaji","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Pittsburgh, Pittsburgh, PA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Pittsburgh, Pittsburgh, PA, USA","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060016795","display_name":"Heng Huang","orcid":"https://orcid.org/0000-0002-3483-8333"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Heng Huang","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Pittsburgh, Pittsburgh, PA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Pittsburgh, Pittsburgh, PA, USA","institution_ids":["https://openalex.org/I170201317"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5060016795"],"corresponding_institution_ids":["https://openalex.org/I170201317"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":11.3436,"has_fulltext":false,"cited_by_count":63,"citation_normalized_percentile":{"value":0.98540453,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"34","issue":"17","first_page":"i603","last_page":"i611"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10775","display_name":"Generative Adversarial Networks and Image Synthesis","score":0.9879999756813049,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9822999835014343,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.7598005533218384},{"id":"https://openalex.org/keywords/generative-grammar","display_name":"Generative grammar","score":0.7534894943237305},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6198686361312866},{"id":"https://openalex.org/keywords/generative-adversarial-network","display_name":"Generative adversarial network","score":0.5665075778961182},{"id":"https://openalex.org/keywords/adversarial-system","display_name":"Adversarial system","score":0.533029317855835},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.531116247177124},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.5057451725006104},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.434505820274353},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3524542450904846},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23234689235687256},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.17583724856376648},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08669251203536987}],"concepts":[{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.7598005533218384},{"id":"https://openalex.org/C39890363","wikidata":"https://www.wikidata.org/wiki/Q36108","display_name":"Generative grammar","level":2,"score":0.7534894943237305},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6198686361312866},{"id":"https://openalex.org/C2988773926","wikidata":"https://www.wikidata.org/wiki/Q25104379","display_name":"Generative adversarial network","level":3,"score":0.5665075778961182},{"id":"https://openalex.org/C37736160","wikidata":"https://www.wikidata.org/wiki/Q1801315","display_name":"Adversarial system","level":2,"score":0.533029317855835},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.531116247177124},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.5057451725006104},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.434505820274353},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3524542450904846},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23234689235687256},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.17583724856376648},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08669251203536987}],"mesh":[{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016014","descriptor_name":"Linear Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016014","descriptor_name":"Linear Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016014","descriptor_name":"Linear Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bty563","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty563","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/17/i603/25702278/bty563.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30423066","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30423066","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:5675858","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6129263","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty563","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty563","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/17/i603/25702278/bty563.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.4399999976158142}],"awards":[{"id":"https://openalex.org/G3559141165","display_name":null,"funder_award_id":"DBI 1356628","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G37673707","display_name":null,"funder_award_id":"IIS 1619308","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6134515427","display_name":null,"funder_award_id":"R01 AG049371","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7136375676","display_name":null,"funder_award_id":"IIS 1344152","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7762013212","display_name":null,"funder_award_id":"IIS 1633753","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G942013628","display_name":null,"funder_award_id":"IIS 1302675","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2892055372.pdf","grobid_xml":"https://content.openalex.org/works/W2892055372.grobid-xml"},"referenced_works_count":66,"referenced_works":["https://openalex.org/W398859631","https://openalex.org/W1522301498","https://openalex.org/W1533861849","https://openalex.org/W1544009106","https://openalex.org/W1552434751","https://openalex.org/W1665214252","https://openalex.org/W1787224781","https://openalex.org/W1836465849","https://openalex.org/W1904365287","https://openalex.org/W1964655247","https://openalex.org/W2018838463","https://openalex.org/W2020541351","https://openalex.org/W2022495797","https://openalex.org/W2060356473","https://openalex.org/W2085963386","https://openalex.org/W2097117768","https://openalex.org/W2098967508","https://openalex.org/W2108101947","https://openalex.org/W2117130368","https://openalex.org/W2139967559","https://openalex.org/W2146502635","https://openalex.org/W2160815625","https://openalex.org/W2162563329","https://openalex.org/W2187341651","https://openalex.org/W2194775991","https://openalex.org/W2248556341","https://openalex.org/W2264017649","https://openalex.org/W2271343396","https://openalex.org/W2342807339","https://openalex.org/W2393319904","https://openalex.org/W2527229715","https://openalex.org/W2533012945","https://openalex.org/W2552465644","https://openalex.org/W2560674852","https://openalex.org/W2593414223","https://openalex.org/W2595840341","https://openalex.org/W2597851033","https://openalex.org/W2625219738","https://openalex.org/W2752843037","https://openalex.org/W2766527293","https://openalex.org/W2768977980","https://openalex.org/W2950420695","https://openalex.org/W2951482750","https://openalex.org/W2962793481","https://openalex.org/W2963073614","https://openalex.org/W2963341071","https://openalex.org/W2963446712","https://openalex.org/W2964137095","https://openalex.org/W4294643831","https://openalex.org/W4297772798","https://openalex.org/W6621378261","https://openalex.org/W6631190155","https://openalex.org/W6631943919","https://openalex.org/W6637242042","https://openalex.org/W6638667902","https://openalex.org/W6640036494","https://openalex.org/W6681435938","https://openalex.org/W6684191040","https://openalex.org/W6691096134","https://openalex.org/W6695676441","https://openalex.org/W6718379498","https://openalex.org/W6725739302","https://openalex.org/W6729966448","https://openalex.org/W6739246803","https://openalex.org/W6744128701","https://openalex.org/W6745560452"],"related_works":["https://openalex.org/W2381031055","https://openalex.org/W2366070815","https://openalex.org/W2888032422","https://openalex.org/W2996316059","https://openalex.org/W3178813832","https://openalex.org/W4385421777","https://openalex.org/W4377980832","https://openalex.org/W2897769091","https://openalex.org/W2971552217","https://openalex.org/W2969215546"],"abstract_inverted_index":{"As":[0],"a":[1,26,40],"flexible":[2],"model":[3],"with":[4],"high":[5],"representative":[6],"power,":[7],"deep":[8,27],"learning":[9,28],"models":[10],"provide":[11],"an":[12],"alternate":[13],"to":[14,78],"interpret":[15],"the":[16,31,49,59,70,100],"complex":[17],"relation":[18],"among":[19],"genes.":[20],"In":[21],"this":[22],"paper,":[23],"we":[24],"propose":[25],"architecture":[29],"for":[30],"inference":[32],"of":[33],"target":[34],"gene":[35],"expression":[36],"profiles.":[37],"We":[38,84],"construct":[39],"novel":[41],"conditional":[42],"generative":[43],"adversarial":[44,50,72],"network":[45],"by":[46,65],"incorporating":[47],"both":[48],"and":[51,61,73,81,92,95],"\u21131-norm":[52,74],"loss":[53,75],"terms":[54],"in":[55],"our":[56,86],"model.":[57],"Unlike":[58],"smooth":[60],"blurry":[62],"predictions":[63],"resulted":[64],"mean":[66],"squared":[67],"error":[68],"objective,":[69],"coupled":[71],"function":[76],"leads":[77],"more":[79],"accurate":[80],"sharp":[82],"predictions.":[83],"validate":[85],"method":[87],"under":[88],"two":[89],"different":[90],"settings":[91],"find":[93],"consistent":[94],"significant":[96],"improvements":[97],"over":[98],"all":[99],"comparing":[101],"methods.":[102]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":18},{"year":2020,"cited_by_count":17},{"year":2019,"cited_by_count":7}],"updated_date":"2026-03-04T09:10:02.777135","created_date":"2025-10-10T00:00:00"}
