{"id":"https://openalex.org/W2891210592","doi":"https://doi.org/10.1093/bioinformatics/bty554","title":"Off-target predictions in CRISPR-Cas9 gene editing using deep learning","display_name":"Off-target predictions in CRISPR-Cas9 gene editing using deep learning","publication_year":2018,"publication_date":"2018-07-06","ids":{"openalex":"https://openalex.org/W2891210592","doi":"https://doi.org/10.1093/bioinformatics/bty554","mag":"2891210592","pmid":"https://pubmed.ncbi.nlm.nih.gov/30423072"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty554","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty554","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/17/i656/25702338/bty554.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/17/i656/25702338/bty554.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023725018","display_name":"Jiecong Lin","orcid":"https://orcid.org/0000-0003-3347-837X"},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Jiecong Lin","raw_affiliation_strings":["Department of Computer Science, City University of Hong Kong, Kowloon Tong, Hong Kong SAR"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, City University of Hong Kong, Kowloon Tong, Hong Kong SAR","institution_ids":["https://openalex.org/I168719708"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030015771","display_name":"Ka\u2010Chun Wong","orcid":"https://orcid.org/0000-0001-6062-733X"},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]}],"countries":["HK"],"is_corresponding":true,"raw_author_name":"Ka-Chun Wong","raw_affiliation_strings":["Department of Computer Science, City University of Hong Kong, Kowloon Tong, Hong Kong SAR"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, City University of Hong Kong, Kowloon Tong, Hong Kong SAR","institution_ids":["https://openalex.org/I168719708"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5030015771"],"corresponding_institution_ids":["https://openalex.org/I168719708"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":6.7956,"has_fulltext":true,"cited_by_count":183,"citation_normalized_percentile":{"value":0.97782938,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"34","issue":"17","first_page":"i656","last_page":"i663"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9869999885559082,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9772999882698059,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8151957392692566},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.7099722623825073},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.6439159512519836},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6378883719444275},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5845528244972229},{"id":"https://openalex.org/keywords/crispr","display_name":"CRISPR","score":0.57869952917099},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.5657460689544678},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5223363637924194},{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.5162231922149658},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07498213648796082},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.07133406400680542}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8151957392692566},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.7099722623825073},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.6439159512519836},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6378883719444275},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5845528244972229},{"id":"https://openalex.org/C98108389","wikidata":"https://www.wikidata.org/wiki/Q412563","display_name":"CRISPR","level":3,"score":0.57869952917099},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.5657460689544678},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5223363637924194},{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.5162231922149658},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07498213648796082},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.07133406400680542},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016015","descriptor_name":"Logistic Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016015","descriptor_name":"Logistic Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016015","descriptor_name":"Logistic Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019540","descriptor_name":"Area Under Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019540","descriptor_name":"Area Under Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019540","descriptor_name":"Area Under Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064113","descriptor_name":"CRISPR-Cas Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064113","descriptor_name":"CRISPR-Cas Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064113","descriptor_name":"CRISPR-Cas Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/bty554","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty554","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/17/i656/25702338/bty554.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30423072","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30423072","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pure.atira.dk:publications/e1f1e19f-51a1-4a2a-ae78-475125ca2b15","is_oa":true,"landing_page_url":"https://hdl.handle.net/2031/e1f1e19f-51a1-4a2a-ae78-475125ca2b15","pdf_url":"https://scholars.cityu.edu.hk/files/27487619/Off_target_predictions_in_CRISPR_Cas9_gene_editing_using_deep_learning.pdf","source":{"id":"https://openalex.org/S7407055387","display_name":"CityU Scholars","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Lin, J & Wong, K-C 2018, 'Off-target predictions in CRISPR-Cas9 gene editing using deep learning', Bioinformatics, vol. 34, no. 17, pp. i656-i663. https://doi.org/10.1093/bioinformatics/bty554","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5083526","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6129261","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6129261","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6129261","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty554","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty554","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/17/i656/25702338/bty554.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.6299999952316284,"display_name":"Life in Land"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320309893","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2891210592.pdf","grobid_xml":"https://content.openalex.org/works/W2891210592.grobid-xml"},"referenced_works_count":47,"referenced_works":["https://openalex.org/W1145889259","https://openalex.org/W1973260880","https://openalex.org/W1980913087","https://openalex.org/W1990149668","https://openalex.org/W1996788258","https://openalex.org/W2003171404","https://openalex.org/W2003797386","https://openalex.org/W2009618608","https://openalex.org/W2026520402","https://openalex.org/W2036176224","https://openalex.org/W2050480410","https://openalex.org/W2058792860","https://openalex.org/W2062569898","https://openalex.org/W2064815984","https://openalex.org/W2077659966","https://openalex.org/W2085993152","https://openalex.org/W2095705004","https://openalex.org/W2096261947","https://openalex.org/W2101234009","https://openalex.org/W2105464583","https://openalex.org/W2122836421","https://openalex.org/W2139314409","https://openalex.org/W2141825721","https://openalex.org/W2149402050","https://openalex.org/W2167380395","https://openalex.org/W2173737475","https://openalex.org/W2252568502","https://openalex.org/W2433743436","https://openalex.org/W2461013690","https://openalex.org/W2591777705","https://openalex.org/W2601016637","https://openalex.org/W2604130415","https://openalex.org/W2605113678","https://openalex.org/W2620841039","https://openalex.org/W2726053863","https://openalex.org/W2730472814","https://openalex.org/W2736476343","https://openalex.org/W2740810575","https://openalex.org/W2749122933","https://openalex.org/W2763854598","https://openalex.org/W2765466523","https://openalex.org/W2768047332","https://openalex.org/W2889498145","https://openalex.org/W4206892629","https://openalex.org/W4292230674","https://openalex.org/W6674330103","https://openalex.org/W6675354045"],"related_works":["https://openalex.org/W4293199045","https://openalex.org/W4226493464","https://openalex.org/W4312417841","https://openalex.org/W4372048956","https://openalex.org/W3193565141","https://openalex.org/W3133861977","https://openalex.org/W4206989953","https://openalex.org/W4283776244","https://openalex.org/W3167935049","https://openalex.org/W3029198973"],"abstract_inverted_index":{"The":[0,7],"example":[1],"code":[2],"are":[3,10],"available":[4,11],"at":[5,12],"https://github.com/MichaelLinn/off_target_prediction.":[6],"related":[8],"datasets":[9],"https://github.com/MichaelLinn/off_target_prediction/tree/master/data.":[13]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":36},{"year":2024,"cited_by_count":23},{"year":2023,"cited_by_count":26},{"year":2022,"cited_by_count":21},{"year":2021,"cited_by_count":29},{"year":2020,"cited_by_count":21},{"year":2019,"cited_by_count":21},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1}],"updated_date":"2026-04-18T07:56:08.524223","created_date":"2025-10-10T00:00:00"}
