{"id":"https://openalex.org/W2809606228","doi":"https://doi.org/10.1093/bioinformatics/bty493","title":"ICBdocker: a Docker image for proteome annotation and visualization","display_name":"ICBdocker: a Docker image for proteome annotation and visualization","publication_year":2018,"publication_date":"2018-06-15","ids":{"openalex":"https://openalex.org/W2809606228","doi":"https://doi.org/10.1093/bioinformatics/bty493","mag":"2809606228","pmid":"https://pubmed.ncbi.nlm.nih.gov/29931249"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty493","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty493","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038645988","display_name":"Nicola Bordin","orcid":"https://orcid.org/0000-0002-6568-9035"},"institutions":[{"id":"https://openalex.org/I4210111405","display_name":"Centro Andaluz de Biolog\u00eda del Desarrollo","ror":"https://ror.org/01v5e3436","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210111405","https://openalex.org/I918821925","https://openalex.org/I95013407"]},{"id":"https://openalex.org/I95013407","display_name":"Universidad Pablo de Olavide","ror":"https://ror.org/02z749649","country_code":"ES","type":"education","lineage":["https://openalex.org/I95013407"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Nicola Bordin","raw_affiliation_strings":["Laboratory of Evolutionary Innovations, Centro Andaluz de Biologia del Desarollo, CSIC, Universidad Pablo de Olavide, Carretera de Utrera, Seville, Spain"],"raw_orcid":"https://orcid.org/0000-0002-6568-9035","affiliations":[{"raw_affiliation_string":"Laboratory of Evolutionary Innovations, Centro Andaluz de Biologia del Desarollo, CSIC, Universidad Pablo de Olavide, Carretera de Utrera, Seville, Spain","institution_ids":["https://openalex.org/I4210111405","https://openalex.org/I95013407"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040059021","display_name":"Damien P. Devos","orcid":"https://orcid.org/0000-0002-9453-4753"},"institutions":[{"id":"https://openalex.org/I4210111405","display_name":"Centro Andaluz de Biolog\u00eda del Desarrollo","ror":"https://ror.org/01v5e3436","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210111405","https://openalex.org/I918821925","https://openalex.org/I95013407"]},{"id":"https://openalex.org/I95013407","display_name":"Universidad Pablo de Olavide","ror":"https://ror.org/02z749649","country_code":"ES","type":"education","lineage":["https://openalex.org/I95013407"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Damien P Devos","raw_affiliation_strings":["Laboratory of Evolutionary Innovations, Centro Andaluz de Biologia del Desarollo, CSIC, Universidad Pablo de Olavide, Carretera de Utrera, Seville, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Evolutionary Innovations, Centro Andaluz de Biologia del Desarollo, CSIC, Universidad Pablo de Olavide, Carretera de Utrera, Seville, Spain","institution_ids":["https://openalex.org/I4210111405","https://openalex.org/I95013407"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5038645988","https://openalex.org/A5040059021"],"corresponding_institution_ids":["https://openalex.org/I4210111405","https://openalex.org/I95013407"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":0.1268,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.44737877,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"34","issue":"22","first_page":"3937","last_page":"3938"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.5264000296592712,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.5264000296592712,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.19130000472068787,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.048500001430511475,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/perl","display_name":"Perl","score":0.8797601461410522},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8216118812561035},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.7452200651168823},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.6836915612220764},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6369445323944092},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6325326561927795},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.616938054561615},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5874682068824768},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.4839787483215332},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4521116316318512},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.44142961502075195},{"id":"https://openalex.org/keywords/modularity","display_name":"Modularity (biology)","score":0.4341937303543091},{"id":"https://openalex.org/keywords/application-programming-interface","display_name":"Application programming interface","score":0.41515955328941345},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.4123140871524811},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3886656165122986},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.36444681882858276},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.33225327730178833},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.22882327437400818},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.13878130912780762},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.12193158268928528}],"concepts":[{"id":"https://openalex.org/C2777002779","wikidata":"https://www.wikidata.org/wiki/Q42478","display_name":"Perl","level":2,"score":0.8797601461410522},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8216118812561035},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.7452200651168823},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.6836915612220764},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6369445323944092},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6325326561927795},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.616938054561615},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5874682068824768},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.4839787483215332},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4521116316318512},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.44142961502075195},{"id":"https://openalex.org/C2779478453","wikidata":"https://www.wikidata.org/wiki/Q6889748","display_name":"Modularity (biology)","level":2,"score":0.4341937303543091},{"id":"https://openalex.org/C99613125","wikidata":"https://www.wikidata.org/wiki/Q165194","display_name":"Application programming interface","level":2,"score":0.41515955328941345},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.4123140871524811},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3886656165122986},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.36444681882858276},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.33225327730178833},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.22882327437400818},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.13878130912780762},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.12193158268928528},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/bty493","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty493","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29931249","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29931249","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:digital.csic.es:10261/242373","is_oa":false,"landing_page_url":"http://hdl.handle.net/10261/242373","pdf_url":null,"source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"http://purl.org/coar/resource_type/c_6501"},{"id":"pmh:oai:www.research.unipd.it:11577/3597654","is_oa":false,"landing_page_url":"https://hdl.handle.net/11577/3597654","pdf_url":null,"source":{"id":"https://openalex.org/S4306402547","display_name":"Padua Research Archive (University of Padova)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138689650","host_organization_name":"University of Padua","host_organization_lineage":["https://openalex.org/I138689650"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.46000000834465027,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W1574680346","https://openalex.org/W2047544230","https://openalex.org/W2051210555","https://openalex.org/W2065283382","https://openalex.org/W2094201044","https://openalex.org/W2101291993","https://openalex.org/W2103017472","https://openalex.org/W2116423958","https://openalex.org/W2142529984","https://openalex.org/W2152770371","https://openalex.org/W2156407548","https://openalex.org/W2158714788","https://openalex.org/W2159482845","https://openalex.org/W2161529001","https://openalex.org/W2170463736","https://openalex.org/W2296335794","https://openalex.org/W2800847400","https://openalex.org/W3113043731","https://openalex.org/W6697144307"],"related_works":["https://openalex.org/W3127882307","https://openalex.org/W2529681551","https://openalex.org/W64450593","https://openalex.org/W1537913012","https://openalex.org/W2327204559","https://openalex.org/W2809606228","https://openalex.org/W3185131596","https://openalex.org/W3112960188","https://openalex.org/W2928866692","https://openalex.org/W4288415921"],"abstract_inverted_index":{"Summary:":[0],"We":[1],"introduce":[2],"ICBdocker,":[3],"a":[4,19,30,36],"Docker":[5],"environment":[6],"that":[7],"allows":[8],"the":[9,39],"annotation":[10],"of":[11,16,68],"functional":[12],"and":[13,52,57,64,72,77,89],"structural":[14],"features":[15],"proteomes":[17],"through":[18],"Python/Perl":[20],"pipeline.":[21],"DataTables":[22],"pages":[23],"make":[24],"it":[25],"easy":[26],"to":[27],"set":[28],"up":[29],"web-resource":[31],"for":[32],"research":[33],"groups":[34],"with":[35,66,70],"focus":[37],"on":[38,62,83,93],"same":[40],"organisms":[41],"or":[42],"datasets.":[43],"The":[44,59],"results":[45],"are":[46,91],"available":[47,82,92],"as":[48],"tab-separated":[49],"values":[50],"files":[51],"HTML,":[53],"allowing":[54],"data":[55],"analysis":[56],"browsing.":[58],"pipeline":[60],"focuses":[61],"modularity":[63],"scalability,":[65],"capability":[67],"integrating":[69],"multi-processing":[71],"high-performance":[73],"computing":[74],"clusters.":[75],"Availability":[76],"implementation:":[78],"ICBdocker":[79],"is":[80],"freely":[81],"DockerHub":[84],"at":[85],"https://hub.docker.com/r/bordin89/icb/":[86],"Source":[87],"code":[88],"documentation":[90],"GitHub":[94],"at:":[95],"https://github.com/bordin89/ICB_docker.":[96]},"counts_by_year":[{"year":2018,"cited_by_count":1}],"updated_date":"2026-08-27T14:10:00.468798","created_date":"2025-10-10T00:00:00"}
