{"id":"https://openalex.org/W2809482272","doi":"https://doi.org/10.1093/bioinformatics/bty480","title":"The ancestral KH peptide at the root of a domain family with three different folds","display_name":"The ancestral KH peptide at the root of a domain family with three different folds","publication_year":2018,"publication_date":"2018-06-13","ids":{"openalex":"https://openalex.org/W2809482272","doi":"https://doi.org/10.1093/bioinformatics/bty480","mag":"2809482272","pmid":"https://pubmed.ncbi.nlm.nih.gov/29912332"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty480","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty480","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/23/3961/26676711/bty480.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/23/3961/26676711/bty480.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041584450","display_name":"Joana Pereira","orcid":"https://orcid.org/0000-0002-5588-6588"},"institutions":[{"id":"https://openalex.org/I4210112458","display_name":"Max Planck Institute for Developmental Biology","ror":"https://ror.org/022jc0g24","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210112458"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Joana Pereira","raw_affiliation_strings":["Department of Protein Evolution, Max-Planck-Institute for Developmental Biology, T\u00fcbingen, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Protein Evolution, Max-Planck-Institute for Developmental Biology, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210112458"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030962194","display_name":"Andrei N. Lupas","orcid":"https://orcid.org/0000-0002-1959-4836"},"institutions":[{"id":"https://openalex.org/I4210112458","display_name":"Max Planck Institute for Developmental Biology","ror":"https://ror.org/022jc0g24","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210112458"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Andrei N Lupas","raw_affiliation_strings":["Department of Protein Evolution, Max-Planck-Institute for Developmental Biology, T\u00fcbingen, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Protein Evolution, Max-Planck-Institute for Developmental Biology, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210112458"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5030962194"],"corresponding_institution_ids":["https://openalex.org/I4210112458"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.8376,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.724607,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"34","issue":"23","first_page":"3961","last_page":"3965"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.6393752694129944},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.553469717502594},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5268194675445557},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.48952922224998474},{"id":"https://openalex.org/keywords/homology","display_name":"Homology (biology)","score":0.4796046018600464},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4677206575870514},{"id":"https://openalex.org/keywords/motif","display_name":"Motif (music)","score":0.45143020153045654},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.44778475165367126},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.42338305711746216},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.38198158144950867},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3126845359802246},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.21814143657684326},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.07990509271621704}],"concepts":[{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.6393752694129944},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.553469717502594},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5268194675445557},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.48952922224998474},{"id":"https://openalex.org/C165525559","wikidata":"https://www.wikidata.org/wiki/Q224180","display_name":"Homology (biology)","level":3,"score":0.4796046018600464},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4677206575870514},{"id":"https://openalex.org/C32276052","wikidata":"https://www.wikidata.org/wiki/Q908349","display_name":"Motif (music)","level":2,"score":0.45143020153045654},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.44778475165367126},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.42338305711746216},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.38198158144950867},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3126845359802246},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.21814143657684326},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.07990509271621704},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D034441","descriptor_name":"Heterogeneous-Nuclear Ribonucleoproteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D034441","descriptor_name":"Heterogeneous-Nuclear Ribonucleoproteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D034441","descriptor_name":"Heterogeneous-Nuclear Ribonucleoproteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bty480","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty480","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/23/3961/26676711/bty480.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29912332","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29912332","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pure.mpg.de:item_3067174","is_oa":false,"landing_page_url":"http://hdl.handle.net/21.11116/0000-0003-C2D4-2","pdf_url":null,"source":{"id":"https://openalex.org/S4306400654","display_name":"MPG.PuRe (Max Planck Society)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty480","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty480","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/23/3961/26676711/bty480.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322434","display_name":"Max-Planck-Gesellschaft","ror":"https://ror.org/01hhn8329"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2809482272.pdf","grobid_xml":"https://content.openalex.org/works/W2809482272.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W103677414","https://openalex.org/W1508885706","https://openalex.org/W1722029454","https://openalex.org/W1965827393","https://openalex.org/W1981575795","https://openalex.org/W2024145718","https://openalex.org/W2045777307","https://openalex.org/W2052870583","https://openalex.org/W2074069606","https://openalex.org/W2082667898","https://openalex.org/W2115888213","https://openalex.org/W2117348651","https://openalex.org/W2124030672","https://openalex.org/W2138872556","https://openalex.org/W2145268834","https://openalex.org/W2156125289","https://openalex.org/W2161072217","https://openalex.org/W2164122903","https://openalex.org/W2211953232","https://openalex.org/W2343212594","https://openalex.org/W2495673413","https://openalex.org/W2608910693","https://openalex.org/W2774178591","https://openalex.org/W2949867299"],"related_works":["https://openalex.org/W2393806059","https://openalex.org/W1589975312","https://openalex.org/W2143537935","https://openalex.org/W2046677260","https://openalex.org/W2582797103","https://openalex.org/W1999832194","https://openalex.org/W2091827130","https://openalex.org/W2086851734","https://openalex.org/W2073366206","https://openalex.org/W1994459954"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":2}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
