{"id":"https://openalex.org/W2809020452","doi":"https://doi.org/10.1093/bioinformatics/bty471","title":"Estimating pseudocounts and fold changes for digital expression measurements","display_name":"Estimating pseudocounts and fold changes for digital expression measurements","publication_year":2018,"publication_date":"2018-06-13","ids":{"openalex":"https://openalex.org/W2809020452","doi":"https://doi.org/10.1093/bioinformatics/bty471","mag":"2809020452","pmid":"https://pubmed.ncbi.nlm.nih.gov/29931226"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty471","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty471","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005259316","display_name":"Florian Erhard","orcid":"https://orcid.org/0000-0002-3574-6983"},"institutions":[{"id":"https://openalex.org/I25974101","display_name":"University of W\u00fcrzburg","ror":"https://ror.org/00fbnyb24","country_code":"DE","type":"education","lineage":["https://openalex.org/I25974101"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Florian Erhard","raw_affiliation_strings":["Institut f\u00fcr Virologie und Immunbiologie, Julius-Maximilians-Universit\u00e4t W\u00fcrzburg, 97078 W\u00fcrzburg, Germany"],"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Virologie und Immunbiologie, Julius-Maximilians-Universit\u00e4t W\u00fcrzburg, 97078 W\u00fcrzburg, Germany","institution_ids":["https://openalex.org/I25974101"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5005259316"],"corresponding_institution_ids":["https://openalex.org/I25974101"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.6345,"has_fulltext":false,"cited_by_count":36,"citation_normalized_percentile":{"value":0.62507529,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"34","issue":"23","first_page":"4054","last_page":"4063"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9876999855041504,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/fold","display_name":"Fold (higher-order function)","score":0.8419378995895386},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4974518120288849},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.44871029257774353},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.384676456451416},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2705252170562744},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11952430009841919}],"concepts":[{"id":"https://openalex.org/C53942344","wikidata":"https://www.wikidata.org/wiki/Q951651","display_name":"Fold (higher-order function)","level":2,"score":0.8419378995895386},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4974518120288849},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.44871029257774353},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.384676456451416},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2705252170562744},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11952430009841919}],"mesh":[{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bty471","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty471","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29931226","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29931226","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1184111462","display_name":null,"funder_award_id":"0703/89374/3/2017","funder_id":"https://openalex.org/F4320323888","funder_display_name":"Bayerisches Staatsministerium\u00a0f\u00fcr Wirtschaft und Medien,\u00a0Energie und Technologie"},{"id":"https://openalex.org/G7090302526","display_name":null,"funder_award_id":"0703/68674/5/2017","funder_id":"https://openalex.org/F4320323888","funder_display_name":"Bayerisches Staatsministerium\u00a0f\u00fcr Wirtschaft und Medien,\u00a0Energie und Technologie"}],"funders":[{"id":"https://openalex.org/F4320323888","display_name":"Bayerisches Staatsministerium\u00a0f\u00fcr Wirtschaft und Medien,\u00a0Energie und Technologie","ror":"https://ror.org/00rspzk45"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W1509562192","https://openalex.org/W1519422934","https://openalex.org/W1558148339","https://openalex.org/W1569946922","https://openalex.org/W2038598202","https://openalex.org/W2053003053","https://openalex.org/W2079517684","https://openalex.org/W2092988184","https://openalex.org/W2119204091","https://openalex.org/W2130879249","https://openalex.org/W2142439429","https://openalex.org/W2152239989","https://openalex.org/W2158485828","https://openalex.org/W2163895779","https://openalex.org/W2166820820","https://openalex.org/W2179438025","https://openalex.org/W2236822143","https://openalex.org/W4245668478","https://openalex.org/W4299551239","https://openalex.org/W6633125654"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W1181095405","https://openalex.org/W3014426369","https://openalex.org/W4240318783","https://openalex.org/W2311285072","https://openalex.org/W1573293794","https://openalex.org/W783636722","https://openalex.org/W2292230535"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
