{"id":"https://openalex.org/W2807423349","doi":"https://doi.org/10.1093/bioinformatics/bty454","title":"MIDORI server: a webserver for taxonomic assignment of unknown metazoan mitochondrial-encoded sequences using a curated database","display_name":"MIDORI server: a webserver for taxonomic assignment of unknown metazoan mitochondrial-encoded sequences using a curated database","publication_year":2018,"publication_date":"2018-06-01","ids":{"openalex":"https://openalex.org/W2807423349","doi":"https://doi.org/10.1093/bioinformatics/bty454","mag":"2807423349","pmid":"https://pubmed.ncbi.nlm.nih.gov/29878054"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty454","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty454","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1093/bioinformatics/bty454","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053343788","display_name":"Matthieu Leray","orcid":"https://orcid.org/0000-0002-7327-1878"},"institutions":[{"id":"https://openalex.org/I128212801","display_name":"Smithsonian Tropical Research Institute","ror":"https://ror.org/035jbxr46","country_code":"PA","type":"facility","lineage":["https://openalex.org/I103187081","https://openalex.org/I128212801"]}],"countries":["PA"],"is_corresponding":false,"raw_author_name":"Matthieu Leray","raw_affiliation_strings":["Smithsonian Tropical Research Institute, Smithsonian Institution, Panama City, Republic of Panama"],"affiliations":[{"raw_affiliation_string":"Smithsonian Tropical Research Institute, Smithsonian Institution, Panama City, Republic of Panama","institution_ids":["https://openalex.org/I128212801"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064850859","display_name":"Shian-Lei Ho","orcid":null},"institutions":[{"id":"https://openalex.org/I4210138331","display_name":"Biodiversity Research Center, Academia Sinica","ror":"https://ror.org/040bb7493","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210138331","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Shian-Lei Ho","raw_affiliation_strings":["Biodiversity Research Centre, Academia Sinica, Taipei, Taiwan"],"affiliations":[{"raw_affiliation_string":"Biodiversity Research Centre, Academia Sinica, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210138331"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063673611","display_name":"I-Jeng Lin","orcid":null},"institutions":[{"id":"https://openalex.org/I4210138331","display_name":"Biodiversity Research Center, Academia Sinica","ror":"https://ror.org/040bb7493","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210138331","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"I-Jeng Lin","raw_affiliation_strings":["Biodiversity Research Centre, Academia Sinica, Taipei, Taiwan"],"affiliations":[{"raw_affiliation_string":"Biodiversity Research Centre, Academia Sinica, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210138331"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046717115","display_name":"Ryuji J. Machida","orcid":"https://orcid.org/0000-0003-1687-4709"},"institutions":[{"id":"https://openalex.org/I4210138331","display_name":"Biodiversity Research Center, Academia Sinica","ror":"https://ror.org/040bb7493","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210138331","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Ryuji J Machida","raw_affiliation_strings":["Biodiversity Research Centre, Academia Sinica, Taipei, Taiwan"],"affiliations":[{"raw_affiliation_string":"Biodiversity Research Centre, Academia Sinica, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210138331"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5046717115"],"corresponding_institution_ids":["https://openalex.org/I4210138331"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":5.4482,"has_fulltext":false,"cited_by_count":71,"citation_normalized_percentile":{"value":0.95801555,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"34","issue":"21","first_page":"3753","last_page":"3754"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12640","display_name":"Environmental DNA in Biodiversity Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12640","display_name":"Environmental DNA in Biodiversity Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12388","display_name":"Identification and Quantification in Food","score":0.9901000261306763,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.7621351480484009},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.552203893661499},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5134040117263794},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5097596049308777},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4412967562675476},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3518306612968445},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.2155528962612152}],"concepts":[{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.7621351480484009},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.552203893661499},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5134040117263794},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5097596049308777},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4412967562675476},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3518306612968445},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.2155528962612152}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050259","descriptor_name":"Genes, Mitochondrial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050259","descriptor_name":"Genes, Mitochondrial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050259","descriptor_name":"Genes, Mitochondrial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/bty454","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty454","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29878054","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29878054","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:5148399","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6198853","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6198853","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6198853","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty454","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty454","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3345256567","display_name":null,"funder_award_id":"105-2621-B-001-003","funder_id":"https://openalex.org/F4320309618","funder_display_name":"Ministry of Science and Technology"}],"funders":[{"id":"https://openalex.org/F4320309618","display_name":"Ministry of Science and Technology","ror":"https://ror.org/02b207r52"},{"id":"https://openalex.org/F4320321041","display_name":"Academia Sinica","ror":"https://ror.org/05bxb3784"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W1847253990","https://openalex.org/W1963734763","https://openalex.org/W2023574331","https://openalex.org/W2034285706","https://openalex.org/W2101462556","https://openalex.org/W2124141867","https://openalex.org/W2135691213","https://openalex.org/W2137107630","https://openalex.org/W2149415648","https://openalex.org/W2152885278","https://openalex.org/W2488460292","https://openalex.org/W2497096394","https://openalex.org/W2518795824","https://openalex.org/W2607864522","https://openalex.org/W2626467946","https://openalex.org/W2748122213","https://openalex.org/W6726293321"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W4391375266","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191"],"abstract_inverted_index":{"The":[0],"web":[1],"server":[2],"is":[3],"freely":[4],"available":[5],"at":[6],"{http://reference-midori.info/server.php}.":[7]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":13},{"year":2022,"cited_by_count":13},{"year":2021,"cited_by_count":18},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":1}],"updated_date":"2026-03-31T07:56:22.981413","created_date":"2025-10-10T00:00:00"}
