{"id":"https://openalex.org/W2952229854","doi":"https://doi.org/10.1093/bioinformatics/bty432","title":"Axe: rapid, competitive sequence read demultiplexing using a trie","display_name":"Axe: rapid, competitive sequence read demultiplexing using a trie","publication_year":2018,"publication_date":"2018-05-30","ids":{"openalex":"https://openalex.org/W2952229854","doi":"https://doi.org/10.1093/bioinformatics/bty432","mag":"2952229854","pmid":"https://pubmed.ncbi.nlm.nih.gov/29868827"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty432","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty432","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/22/3924/26441099/bty432.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/22/3924/26441099/bty432.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078210447","display_name":"Kevin Murray","orcid":"https://orcid.org/0000-0002-2466-1917"},"institutions":[{"id":"https://openalex.org/I4210102918","display_name":"ARC Centre of Excellence in Plant Energy Biology","ror":"https://ror.org/01a1mq059","country_code":"AU","type":"facility","lineage":["https://openalex.org/I118347636","https://openalex.org/I1337719021","https://openalex.org/I2801453606","https://openalex.org/I4210102918","https://openalex.org/I4210132349"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Kevin D Murray","raw_affiliation_strings":["ARC Centre of Excellence in Plant Energy Biology, Department of Plant Science, Research School of Biology, ANU, Canberra, Australia"],"affiliations":[{"raw_affiliation_string":"ARC Centre of Excellence in Plant Energy Biology, Department of Plant Science, Research School of Biology, ANU, Canberra, Australia","institution_ids":["https://openalex.org/I4210102918"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081111897","display_name":"Justin Borevitz","orcid":"https://orcid.org/0000-0001-8408-3699"},"institutions":[{"id":"https://openalex.org/I4210102918","display_name":"ARC Centre of Excellence in Plant Energy Biology","ror":"https://ror.org/01a1mq059","country_code":"AU","type":"facility","lineage":["https://openalex.org/I118347636","https://openalex.org/I1337719021","https://openalex.org/I2801453606","https://openalex.org/I4210102918","https://openalex.org/I4210132349"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Justin O Borevitz","raw_affiliation_strings":["ARC Centre of Excellence in Plant Energy Biology, Department of Plant Science, Research School of Biology, ANU, Canberra, Australia"],"affiliations":[{"raw_affiliation_string":"ARC Centre of Excellence in Plant Energy Biology, Department of Plant Science, Research School of Biology, ANU, Canberra, Australia","institution_ids":["https://openalex.org/I4210102918"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5078210447"],"corresponding_institution_ids":["https://openalex.org/I4210102918"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.0718,"has_fulltext":true,"cited_by_count":111,"citation_normalized_percentile":{"value":0.92684754,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"34","issue":"22","first_page":"3924","last_page":"3925"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9905999898910522,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9905999898910522,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9900000095367432,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9883999824523926,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/trie","display_name":"Trie","score":0.7563840746879578},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.7093487977981567},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6937280893325806},{"id":"https://openalex.org/keywords/multiplexing","display_name":"Multiplexing","score":0.5476003885269165},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3551187813282013},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3406805396080017},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.3290709853172302},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2714683413505554},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17417436838150024},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.15983077883720398},{"id":"https://openalex.org/keywords/telecommunications","display_name":"Telecommunications","score":0.139290452003479},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13148242235183716}],"concepts":[{"id":"https://openalex.org/C190290938","wikidata":"https://www.wikidata.org/wiki/Q387015","display_name":"Trie","level":3,"score":0.7563840746879578},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.7093487977981567},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6937280893325806},{"id":"https://openalex.org/C19275194","wikidata":"https://www.wikidata.org/wiki/Q222903","display_name":"Multiplexing","level":2,"score":0.5476003885269165},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3551187813282013},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3406805396080017},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.3290709853172302},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2714683413505554},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17417436838150024},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.15983077883720398},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.139290452003479},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13148242235183716}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bty432","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty432","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/22/3924/26441099/bty432.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29868827","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29868827","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:openresearch-repository.anu.edu.au:1885/164215","is_oa":false,"landing_page_url":"http://hdl.handle.net/1885/164215","pdf_url":null,"source":{"id":"https://openalex.org/S4306402539","display_name":"ANU Open Research (Australian National University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I118347636","host_organization_name":"Australian National University","host_organization_lineage":["https://openalex.org/I118347636"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Journal article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty432","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty432","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/22/3924/26441099/bty432.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.46000000834465027}],"awards":[{"id":"https://openalex.org/G14176138","display_name":null,"funder_award_id":"140100008","funder_id":"https://openalex.org/F4320323613","funder_display_name":"Centre of Excellence in Plant Energy Biology, Australian Research Council"},{"id":"https://openalex.org/G1777311946","display_name":null,"funder_award_id":"CE140100008","funder_id":"https://openalex.org/F4320334704","funder_display_name":"Australian Research Council"},{"id":"https://openalex.org/G4619275030","display_name":null,"funder_award_id":"CE14010000","funder_id":"https://openalex.org/F4320334704","funder_display_name":"Australian Research Council"},{"id":"https://openalex.org/G5697554820","display_name":null,"funder_award_id":"CE140100008","funder_id":"https://openalex.org/F4320323613","funder_display_name":"Centre of Excellence in Plant Energy Biology, Australian Research Council"},{"id":"https://openalex.org/G5784812539","display_name":null,"funder_award_id":"NCI","funder_id":"https://openalex.org/F4320312169","funder_display_name":"National Computational Infrastructure"}],"funders":[{"id":"https://openalex.org/F4320312169","display_name":"National Computational Infrastructure","ror":"https://ror.org/04yx6dh41"},{"id":"https://openalex.org/F4320315885","display_name":"Australian Government","ror":"https://ror.org/0314h5y94"},{"id":"https://openalex.org/F4320323613","display_name":"Centre of Excellence in Plant Energy Biology, Australian Research Council","ror":"https://ror.org/01a1mq059"},{"id":"https://openalex.org/F4320334704","display_name":"Australian Research Council","ror":"https://ror.org/05mmh0f86"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2952229854.pdf","grobid_xml":"https://content.openalex.org/works/W2952229854.grobid-xml"},"referenced_works_count":8,"referenced_works":["https://openalex.org/W1980073965","https://openalex.org/W2041677964","https://openalex.org/W2121413434","https://openalex.org/W2132840768","https://openalex.org/W2159474015","https://openalex.org/W2161184021","https://openalex.org/W2263582186","https://openalex.org/W2342204193"],"related_works":["https://openalex.org/W104884668","https://openalex.org/W2120071517","https://openalex.org/W3112332783","https://openalex.org/W2406489341","https://openalex.org/W2344797854","https://openalex.org/W2113746559","https://openalex.org/W180471195","https://openalex.org/W2080508516","https://openalex.org/W2029271007","https://openalex.org/W2992809476"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":17},{"year":2024,"cited_by_count":32},{"year":2023,"cited_by_count":15},{"year":2022,"cited_by_count":12},{"year":2021,"cited_by_count":18},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":6}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
