{"id":"https://openalex.org/W2950001245","doi":"https://doi.org/10.1093/bioinformatics/bty384","title":"Two C++ libraries for counting trees on a phylogenetic terrace","display_name":"Two C++ libraries for counting trees on a phylogenetic terrace","publication_year":2018,"publication_date":"2018-05-03","ids":{"openalex":"https://openalex.org/W2950001245","doi":"https://doi.org/10.1093/bioinformatics/bty384","mag":"2950001245","pmid":"https://pubmed.ncbi.nlm.nih.gov/29746618"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty384","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty384","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/19/3399/25839697/bty384.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/19/3399/25839697/bty384.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054156000","display_name":"Rudolf Biczok","orcid":null},"institutions":[{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"R Biczok","raw_affiliation_strings":["Institute for Theoretical Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Theoretical Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany","institution_ids":["https://openalex.org/I102335020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006073530","display_name":"Peter Bozsoky","orcid":null},"institutions":[{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"P Bozsoky","raw_affiliation_strings":["Institute for Theoretical Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Theoretical Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany","institution_ids":["https://openalex.org/I102335020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003817452","display_name":"Peter Eisenmann","orcid":null},"institutions":[{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"P Eisenmann","raw_affiliation_strings":["Institute for Theoretical Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Theoretical Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany","institution_ids":["https://openalex.org/I102335020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060154728","display_name":"J. Ernst","orcid":null},"institutions":[{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"J Ernst","raw_affiliation_strings":["Institute for Theoretical Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Theoretical Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany","institution_ids":["https://openalex.org/I102335020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057491589","display_name":"Tobias Ribizel","orcid":"https://orcid.org/0000-0003-3023-1849"},"institutions":[{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"T Ribizel","raw_affiliation_strings":["Institute for Theoretical Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Theoretical Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany","institution_ids":["https://openalex.org/I102335020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041532792","display_name":"Fedor Scholz","orcid":"https://orcid.org/0000-0001-8201-5924"},"institutions":[{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"F Scholz","raw_affiliation_strings":["Institute for Theoretical Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Theoretical Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany","institution_ids":["https://openalex.org/I102335020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112034590","display_name":"Axel Trefzer","orcid":null},"institutions":[{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"A Trefzer","raw_affiliation_strings":["Institute for Theoretical Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Theoretical Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany","institution_ids":["https://openalex.org/I102335020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101601297","display_name":"Florian Weber","orcid":"https://orcid.org/0000-0002-4552-9587"},"institutions":[{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"F Weber","raw_affiliation_strings":["Institute for Theoretical Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Theoretical Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany","institution_ids":["https://openalex.org/I102335020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084195614","display_name":"Michael Hamann","orcid":"https://orcid.org/0000-0002-6958-4927"},"institutions":[{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"M Hamann","raw_affiliation_strings":["Institute for Theoretical Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Theoretical Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany","institution_ids":["https://openalex.org/I102335020"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025640090","display_name":"Alexandros Stamatakis","orcid":"https://orcid.org/0000-0003-0353-0691"},"institutions":[{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]},{"id":"https://openalex.org/I71030271","display_name":"Heidelberg Institute for Theoretical Studies","ror":"https://ror.org/01f7bcy98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I71030271"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"A Stamatakis","raw_affiliation_strings":["Institute for Theoretical Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany","Scientific Computing Group, Heidelberg Institute for Theoretical Studies, Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Theoretical Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany","institution_ids":["https://openalex.org/I102335020"]},{"raw_affiliation_string":"Scientific Computing Group, Heidelberg Institute for Theoretical Studies, Heidelberg, Germany","institution_ids":["https://openalex.org/I71030271"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5025640090"],"corresponding_institution_ids":["https://openalex.org/I102335020","https://openalex.org/I71030271"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.6493,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.69384628,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"34","issue":"19","first_page":"3399","last_page":"3401"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.8853999972343445,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.8853999972343445,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.060600001364946365,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11354","display_name":"Evolution and Paleontology Studies","score":0.02370000071823597,"subfield":{"id":"https://openalex.org/subfields/1911","display_name":"Paleontology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.6603856682777405},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.647845447063446},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6281788349151611},{"id":"https://openalex.org/keywords/terrace","display_name":"Terrace (agriculture)","score":0.6080957651138306},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.5229076743125916},{"id":"https://openalex.org/keywords/implementation","display_name":"Implementation","score":0.46119925379753113},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.4557192027568817},{"id":"https://openalex.org/keywords/amortized-analysis","display_name":"Amortized analysis","score":0.43882042169570923},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4113498628139496},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.28458940982818604},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2504114508628845},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2360280454158783},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.23573222756385803},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.19714587926864624},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.16202077269554138},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.09339603781700134},{"id":"https://openalex.org/keywords/archaeology","display_name":"Archaeology","score":0.07477962970733643}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.6603856682777405},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.647845447063446},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6281788349151611},{"id":"https://openalex.org/C2776638177","wikidata":"https://www.wikidata.org/wiki/Q838625","display_name":"Terrace (agriculture)","level":2,"score":0.6080957651138306},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.5229076743125916},{"id":"https://openalex.org/C26713055","wikidata":"https://www.wikidata.org/wiki/Q245962","display_name":"Implementation","level":2,"score":0.46119925379753113},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.4557192027568817},{"id":"https://openalex.org/C142417499","wikidata":"https://www.wikidata.org/wiki/Q331716","display_name":"Amortized analysis","level":3,"score":0.43882042169570923},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4113498628139496},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.28458940982818604},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2504114508628845},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2360280454158783},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.23573222756385803},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.19714587926864624},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.16202077269554138},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.09339603781700134},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.07477962970733643},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/bty384","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty384","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/19/3399/25839697/bty384.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29746618","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29746618","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:5111638","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6157082","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6157082","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6157082","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty384","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty384","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/19/3399/25839697/bty384.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G8575167908","display_name":null,"funder_award_id":"654/22-2","funder_id":"https://openalex.org/F4320308022","funder_display_name":"California Department of Fish and Game"}],"funders":[{"id":"https://openalex.org/F4320308022","display_name":"California Department of Fish and Game","ror":"https://ror.org/02v6w2r95"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320324316","display_name":"Klaus Tschira Stiftung","ror":"https://ror.org/052jep661"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":6,"referenced_works":["https://openalex.org/W1993092519","https://openalex.org/W2095523744","https://openalex.org/W2102840198","https://openalex.org/W2146604274","https://openalex.org/W2344940607","https://openalex.org/W2394958679"],"related_works":["https://openalex.org/W2360189525","https://openalex.org/W2382154415","https://openalex.org/W2341492732","https://openalex.org/W3187193180","https://openalex.org/W1508766493","https://openalex.org/W106542691","https://openalex.org/W4287027380","https://openalex.org/W1699080303","https://openalex.org/W4297799326","https://openalex.org/W4214505573"],"abstract_inverted_index":{"Motivation:":[0],"The":[1,168],"presence":[2],"of":[3,14,66,118,147,154],"terraces":[4],"in":[5],"phylogenetic":[6,42],"tree":[7,16,75],"space,":[8],"i.e.":[9],"a":[10,54,74,78,87,95,107,133,159],"potentially":[11],"large":[12],"number":[13],"distinct":[15],"topologies":[17],"that":[18,102],"have":[19],"exactly":[20,138],"the":[21,64,119,139],"same":[22,140],"analytical":[23],"likelihood":[24,39],"score,":[25],"was":[26],"first":[27],"described":[28],"by":[29,122],"Sanderson":[30],"et":[31],"al.":[32],"However,":[33],"popular":[34],"software":[35],"tools":[36],"for":[37,127],"maximum":[38],"and":[40,89,114,124,129,150,166],"Bayesian":[41],"inference":[43],"do":[44],"not":[45],"yet":[46],"routinely":[47],"report,":[48],"if":[49,73],"inferred":[50],"phylogenies":[51],"reside":[52,85],"on":[53,77,86,94,132],"terrace,":[55,79],"or":[56],"not.":[57],"We":[58],"believe,":[59],"this":[60],"is":[61,103],"due":[62],"to":[63,70],"lack":[65],"an":[67],"efficient":[68,113],"library":[69],"(i)":[71],"determine":[72],"resides":[76],"(ii)":[80],"calculate":[81],"how":[82],"many":[83],"trees":[84,93,131],"terrace":[88],"(iii)":[90],"enumerate":[91],"all":[92],"terrace.":[96,134],"Results:":[97],"In":[98],"our":[99],"bioinformatics":[100],"practical":[101],"set":[104],"up":[105],"as":[106],"programming":[108],"contest":[109],"we":[110],"developed":[111],"two":[112],"independent":[115],"C++":[116],"implementations":[117,136],"SUPERB":[120],"algorithm":[121],"Constantinescu":[123],"Sankoff":[125],"(1995)":[126],"counting":[128],"enumerating":[130],"Both":[135],"yield":[137],"results,":[141],"are":[142,171,182],"more":[143],"than":[144,158],"one":[145,152],"order":[146,153],"magnitude":[148,155],"faster,":[149],"require":[151],"less":[156],"memory":[157],"previous":[160],"thirrd":[161],"party":[162],"python":[163],"implementation.":[164],"Availability":[165],"implementation:":[167],"source":[169],"codes":[170],"available":[172,183],"under":[173],"GNU":[174],"GPL":[175],"at":[176,184],"https://github.com/terraphast.":[177],"Supplementary":[178,180],"information:":[179],"data":[181],"Bioinformatics":[185],"online.":[186]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
