{"id":"https://openalex.org/W2794503008","doi":"https://doi.org/10.1093/bioinformatics/bty348","title":"Quantification of biases in predictions of protein stability changes upon mutations","display_name":"Quantification of biases in predictions of protein stability changes upon mutations","publication_year":2018,"publication_date":"2018-04-25","ids":{"openalex":"https://openalex.org/W2794503008","doi":"https://doi.org/10.1093/bioinformatics/bty348","mag":"2794503008","pmid":"https://pubmed.ncbi.nlm.nih.gov/29718106"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty348","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty348","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/21/3659/26146899/bty348.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/21/3659/26146899/bty348.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085366265","display_name":"Fabrizio Pucci","orcid":"https://orcid.org/0000-0003-2916-022X"},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Fabrizio Pucci","raw_affiliation_strings":["Department of BioModeling BioInformatics & BioProcesses, Universit\u00e9 Libre de Bruxelles, Brussels, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of BioModeling BioInformatics & BioProcesses, Universit\u00e9 Libre de Bruxelles, Brussels, Belgium","institution_ids":["https://openalex.org/I132053463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084101985","display_name":"Katrien V. Bernaerts","orcid":"https://orcid.org/0000-0002-2939-2963"},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]},{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]}],"countries":["BE","NL"],"is_corresponding":false,"raw_author_name":"Katrien V Bernaerts","raw_affiliation_strings":["Department of BioModeling BioInformatics & BioProcesses, Universit\u00e9 Libre de Bruxelles, Brussels, Belgium","Department of Biobased Materials, Maastricht University, Maastricht, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of BioModeling BioInformatics & BioProcesses, Universit\u00e9 Libre de Bruxelles, Brussels, Belgium","institution_ids":["https://openalex.org/I132053463"]},{"raw_affiliation_string":"Department of Biobased Materials, Maastricht University, Maastricht, The Netherlands","institution_ids":["https://openalex.org/I34352273"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037585501","display_name":"Jean Marc Kwasigroch","orcid":null},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Jean Marc Kwasigroch","raw_affiliation_strings":["Department of BioModeling BioInformatics & BioProcesses, Universit\u00e9 Libre de Bruxelles, Brussels, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of BioModeling BioInformatics & BioProcesses, Universit\u00e9 Libre de Bruxelles, Brussels, Belgium","institution_ids":["https://openalex.org/I132053463"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073330873","display_name":"Marianne Rooman","orcid":"https://orcid.org/0000-0002-3810-7802"},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Marianne Rooman","raw_affiliation_strings":["Department of BioModeling BioInformatics & BioProcesses, Universit\u00e9 Libre de Bruxelles, Brussels, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of BioModeling BioInformatics & BioProcesses, Universit\u00e9 Libre de Bruxelles, Brussels, Belgium","institution_ids":["https://openalex.org/I132053463"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5085366265"],"corresponding_institution_ids":["https://openalex.org/I132053463"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":6.2581,"has_fulltext":true,"cited_by_count":180,"citation_normalized_percentile":{"value":0.97601783,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"34","issue":"21","first_page":"3659","last_page":"3665"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.7890999913215637,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.7890999913215637,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.06480000168085098,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.027000000700354576,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/stability","display_name":"Stability (learning theory)","score":0.6785852909088135},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6660584211349487},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.5888355374336243},{"id":"https://openalex.org/keywords/point-mutation","display_name":"Point mutation","score":0.5229136347770691},{"id":"https://openalex.org/keywords/folding","display_name":"Folding (DSP implementation)","score":0.48733124136924744},{"id":"https://openalex.org/keywords/mutagenesis","display_name":"Mutagenesis","score":0.47241273522377014},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3804963529109955},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.37015068531036377},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.34601283073425293},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.32307761907577515},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21692416071891785},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18579259514808655},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08849242329597473}],"concepts":[{"id":"https://openalex.org/C112972136","wikidata":"https://www.wikidata.org/wiki/Q7595718","display_name":"Stability (learning theory)","level":2,"score":0.6785852909088135},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6660584211349487},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.5888355374336243},{"id":"https://openalex.org/C176944494","wikidata":"https://www.wikidata.org/wiki/Q1415380","display_name":"Point mutation","level":4,"score":0.5229136347770691},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.48733124136924744},{"id":"https://openalex.org/C16318435","wikidata":"https://www.wikidata.org/wiki/Q149299","display_name":"Mutagenesis","level":4,"score":0.47241273522377014},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3804963529109955},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.37015068531036377},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.34601283073425293},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32307761907577515},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21692416071891785},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18579259514808655},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08849242329597473},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015982","descriptor_name":"Bias","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015982","descriptor_name":"Bias","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015982","descriptor_name":"Bias","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055550","descriptor_name":"Protein Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055550","descriptor_name":"Protein Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055550","descriptor_name":"Protein Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/bty348","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty348","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/21/3659/26146899/bty348.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29718106","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29718106","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:cris.maastrichtuniversity.nl:openaire/ffd24531-191b-4ea1-9d34-7304eb261802","is_oa":true,"landing_page_url":"https://cris.maastrichtuniversity.nl/en/publications/ffd24531-191b-4ea1-9d34-7304eb261802","pdf_url":null,"source":{"id":"https://openalex.org/S4306402616","display_name":"Research Publications (Maastricht University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I34352273","host_organization_name":"Maastricht University","host_organization_lineage":["https://openalex.org/I34352273"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Pucci, F, Bernaerts, K, Kwasigroch , J M & Rooman, M 2018, 'Quantification of biases in predictions of protein stability changes upon mutations', Bioinformatics, vol. 34, no. 21, pp. 3659-3665. https://doi.org/10.1093/bioinformatics/bty348","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:dipot.ulb.ac.be:2013/300283","is_oa":true,"landing_page_url":"https://dipot.ulb.ac.be/dspace/bitstream/2013/300283/3/308239v1.full.pdf","pdf_url":"https://dipot.ulb.ac.be/dspace/bitstream/2013/300283/3/308239v1.full.pdf","source":{"id":"https://openalex.org/S4306401063","display_name":"D\u00e9p\u00f4t institutionnel de l'Universit\u00e9 libre de Bruxelles (Universit\u00e9 Libre de Bruxelles)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I132053463","host_organization_name":"Universit\u00e9 Libre de Bruxelles","host_organization_lineage":["https://openalex.org/I132053463"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 34 (21","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:dipot.ulb.ac.be:2013/266962","is_oa":false,"landing_page_url":"http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/266962","pdf_url":null,"source":{"id":"https://openalex.org/S4306401063","display_name":"D\u00e9p\u00f4t institutionnel de l'Universit\u00e9 libre de Bruxelles (Universit\u00e9 Libre de Bruxelles)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I132053463","host_organization_name":"Universit\u00e9 Libre de Bruxelles","host_organization_lineage":["https://openalex.org/I132053463"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:dipot.ulb.ac.be:2013/283644","is_oa":true,"landing_page_url":"http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/283644","pdf_url":null,"source":{"id":"https://openalex.org/S4306401063","display_name":"D\u00e9p\u00f4t institutionnel de l'Universit\u00e9 libre de Bruxelles (Universit\u00e9 Libre de Bruxelles)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I132053463","host_organization_name":"Universit\u00e9 Libre de Bruxelles","host_organization_lineage":["https://openalex.org/I132053463"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 34 (21","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty348","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty348","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/21/3659/26146899/bty348.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321390","display_name":"Fonds De La Recherche Scientifique - FNRS","ror":"https://ror.org/03q83t159"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2794503008.pdf","grobid_xml":"https://content.openalex.org/works/W2794503008.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W1974116969","https://openalex.org/W1995043867","https://openalex.org/W2031553026","https://openalex.org/W2037312364","https://openalex.org/W2056053449","https://openalex.org/W2060588922","https://openalex.org/W2064488723","https://openalex.org/W2092387745","https://openalex.org/W2093847279","https://openalex.org/W2103459989","https://openalex.org/W2104418738","https://openalex.org/W2120819598","https://openalex.org/W2121519777","https://openalex.org/W2132540199","https://openalex.org/W2135503340","https://openalex.org/W2136513422","https://openalex.org/W2153457180","https://openalex.org/W2154776925","https://openalex.org/W2157773221","https://openalex.org/W2167775670","https://openalex.org/W2168749685","https://openalex.org/W2172034373","https://openalex.org/W2207955902","https://openalex.org/W2213612645","https://openalex.org/W2335773464","https://openalex.org/W2414282720","https://openalex.org/W2428593791","https://openalex.org/W2519539312","https://openalex.org/W2583666712","https://openalex.org/W2606439133","https://openalex.org/W2615841538","https://openalex.org/W2749454133","https://openalex.org/W2916078022","https://openalex.org/W2953906682","https://openalex.org/W2974122212","https://openalex.org/W2982355205","https://openalex.org/W2983394854","https://openalex.org/W6682981795","https://openalex.org/W6703544254","https://openalex.org/W6743119055"],"related_works":["https://openalex.org/W955763280","https://openalex.org/W2550943714","https://openalex.org/W3212350425","https://openalex.org/W2388007221","https://openalex.org/W2511508046","https://openalex.org/W2032247992","https://openalex.org/W2363458739","https://openalex.org/W2385244308","https://openalex.org/W2028961943","https://openalex.org/W2364777039"],"abstract_inverted_index":{"Motivation:":[0],"Bioinformatics":[1,253],"tools":[2],"that":[3,48,176,189],"predict":[4],"protein":[5,66,155,270],"stability":[6,69,271],"changes":[7,112],"upon":[8,113],"point":[9,114],"mutations":[10,115,144,210],"have":[11,22],"made":[12],"a":[13,36,126],"lot":[14],"of":[15,72,108,129,137,149,166,231,241,267],"progress":[16],"in":[17,105,218,269],"the":[18,79,103,106,147,151,164,173,201,212,242,265],"last":[19],"decades":[20],"and":[21,25,58,68,117,139,153,229,236],"become":[23],"accurate":[24],"fast":[26],"enough":[27],"to":[28,52,61,90,199],"make":[29],"computational":[30],"mutagenesis":[31],"experiments":[32],"feasible,":[33],"even":[34],"on":[35,211],"proteome":[37],"scale.":[38],"Despite":[39],"these":[40,73,179],"achievements,":[41],"they":[42],"still":[43],"suffer":[44],"from":[45],"important":[46],"issues":[47],"must":[49],"be":[50,91],"solved":[51],"allow":[53],"further":[54,239],"improving":[55],"their":[56,76],"performances":[57,165],"utilizing":[59],"them":[60],"deepen":[62],"our":[63],"insights":[64],"into":[65],"folding":[67,109],"mechanisms.":[70],"One":[71],"problems":[74],"is":[75,156],"bias":[77,202],"toward":[78,184],"learning":[80],"datasets":[81],"which,":[82],"being":[83],"dominated":[84],"by":[85,124,142,204],"destabilizing":[86,94,140,185],"mutations,":[87,141,186],"causes":[88],"predictions":[89],"better":[92],"for":[93,96,145,238],"than":[95],"stabilizing":[97,138],"mutations.":[98],"Results:":[99],"We":[100,122],"thoroughly":[101],"analyzed":[102],"biases":[104,268],"prediction":[107],"free":[110],"energy":[111],"(\u0394\u0394G0)":[116],"proposed":[118,195],"some":[119],"unbiased":[120],"solutions.":[121],"started":[123],"constructing":[125],"dataset":[127],"Ssym":[128],"experimentally":[130],"measured":[131],"\u0394\u0394G0s":[132],"with":[133],"an":[134,196,224],"equal":[135],"number":[136],"collecting":[143],"which":[146,215],"structure":[148],"both":[150],"wild-type":[152],"mutant":[154],"available.":[157],"On":[158],"this":[159,261],"balanced":[160],"dataset,":[161],"we":[162,194,216],"assessed":[163],"15":[167],"widely":[168],"used":[169],"\u0394\u0394G0":[170],"predictors.":[171],"After":[172],"astonishing":[174],"observation":[175],"almost":[177],"all":[178],"methods":[180],"are":[181,244,250],"strongly":[182],"biased":[183],"especially":[187],"those":[188],"use":[190],"black-box":[191],"machine":[192],"learning,":[193],"elegant":[197],"way":[198],"solve":[200],"issue":[203],"imposing":[205],"physical":[206],"symmetries":[207],"under":[208],"inverse":[209],"model":[213],"structure,":[214],"implemented":[217],"PoPMuSiCsym.":[219],"This":[220],"new":[221],"predictor":[222],"constitutes":[223],"efficient":[225],"trade-off":[226],"between":[227],"accuracy":[228],"absence":[230],"biases.":[232],"Some":[233],"final":[234],"considerations":[235],"suggestions":[237],"improvement":[240],"predictors":[243],"discussed.":[245],"Supplementary":[246,248],"information:":[247],"data":[249],"available":[251],"at":[252],"online.":[254],"Note:":[255],"The":[256],"article":[257],"10.1093/bioinformatics/bty340/,":[258],"published":[259],"alongside":[260],"paper,":[262],"also":[263],"addresses":[264],"problem":[266],"change":[272],"predictions.":[273]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":24},{"year":2024,"cited_by_count":24},{"year":2023,"cited_by_count":26},{"year":2022,"cited_by_count":26},{"year":2021,"cited_by_count":36},{"year":2020,"cited_by_count":24},{"year":2019,"cited_by_count":13},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":1}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
