{"id":"https://openalex.org/W2804789161","doi":"https://doi.org/10.1093/bioinformatics/bty346","title":"Correcting mistakes in predicting distributions","display_name":"Correcting mistakes in predicting distributions","publication_year":2018,"publication_date":"2018-05-08","ids":{"openalex":"https://openalex.org/W2804789161","doi":"https://doi.org/10.1093/bioinformatics/bty346","mag":"2804789161","pmid":"https://pubmed.ncbi.nlm.nih.gov/29762646"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty346","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty346","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/19/3385/25839476/bty346.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/19/3385/25839476/bty346.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014496106","display_name":"Val\u00e9rie Marot-Lassauzaie","orcid":"https://orcid.org/0000-0002-8362-9634"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Val\u00e9rie Marot-Lassauzaie","raw_affiliation_strings":["Department of Informatics, l12\u2013Chair of Bioinformatics and Computational Biology, Technical University of Munich (TUM), Garching/Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, l12\u2013Chair of Bioinformatics and Computational Biology, Technical University of Munich (TUM), Garching/Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035722235","display_name":"Michael Bernhofer","orcid":"https://orcid.org/0000-0001-6103-3306"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Michael Bernhofer","raw_affiliation_strings":["Department of Informatics, l12\u2013Chair of Bioinformatics and Computational Biology, Technical University of Munich (TUM), Garching/Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, l12\u2013Chair of Bioinformatics and Computational Biology, Technical University of Munich (TUM), Garching/Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064905883","display_name":"Burkhard Rost","orcid":"https://orcid.org/0000-0003-0179-8424"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Burkhard Rost","raw_affiliation_strings":["Department of Informatics, l12\u2013Chair of Bioinformatics and Computational Biology, Technical University of Munich (TUM), Garching/Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, l12\u2013Chair of Bioinformatics and Computational Biology, Technical University of Munich (TUM), Garching/Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5014496106"],"corresponding_institution_ids":["https://openalex.org/I62916508"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.5413,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.64673905,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"34","issue":"19","first_page":"3385","last_page":"3386"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.8726999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.8726999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.025200000032782555,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.022199999541044235,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/false-positive-paradox","display_name":"False positive paradox","score":0.8258441686630249},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.720973014831543},{"id":"https://openalex.org/keywords/false-positives-and-false-negatives","display_name":"False positives and false negatives","score":0.6571773290634155},{"id":"https://openalex.org/keywords/confusion-matrix","display_name":"Confusion matrix","score":0.605217695236206},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.5618229508399963},{"id":"https://openalex.org/keywords/class","display_name":"Class (philosophy)","score":0.5505799651145935},{"id":"https://openalex.org/keywords/true-positive-rate","display_name":"True positive rate","score":0.5317719578742981},{"id":"https://openalex.org/keywords/range","display_name":"Range (aeronautics)","score":0.5056333541870117},{"id":"https://openalex.org/keywords/confusion","display_name":"Confusion","score":0.4957767426967621},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4410945773124695},{"id":"https://openalex.org/keywords/fraction","display_name":"Fraction (chemistry)","score":0.4287528097629547},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3446946144104004},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.34045737981796265},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.33375614881515503}],"concepts":[{"id":"https://openalex.org/C64869954","wikidata":"https://www.wikidata.org/wiki/Q1859747","display_name":"False positive paradox","level":2,"score":0.8258441686630249},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.720973014831543},{"id":"https://openalex.org/C112789634","wikidata":"https://www.wikidata.org/wiki/Q18207010","display_name":"False positives and false negatives","level":3,"score":0.6571773290634155},{"id":"https://openalex.org/C138602881","wikidata":"https://www.wikidata.org/wiki/Q2709591","display_name":"Confusion matrix","level":2,"score":0.605217695236206},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.5618229508399963},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.5505799651145935},{"id":"https://openalex.org/C2989486834","wikidata":"https://www.wikidata.org/wiki/Q3808900","display_name":"True positive rate","level":2,"score":0.5317719578742981},{"id":"https://openalex.org/C204323151","wikidata":"https://www.wikidata.org/wiki/Q905424","display_name":"Range (aeronautics)","level":2,"score":0.5056333541870117},{"id":"https://openalex.org/C2781140086","wikidata":"https://www.wikidata.org/wiki/Q557945","display_name":"Confusion","level":2,"score":0.4957767426967621},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4410945773124695},{"id":"https://openalex.org/C149629883","wikidata":"https://www.wikidata.org/wiki/Q660926","display_name":"Fraction (chemistry)","level":2,"score":0.4287528097629547},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3446946144104004},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.34045737981796265},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.33375614881515503},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C11171543","wikidata":"https://www.wikidata.org/wiki/Q41630","display_name":"Psychoanalysis","level":1,"score":0.0},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/bty346","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty346","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/19/3385/25839476/bty346.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29762646","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29762646","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:5111635","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6157078","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6157078","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6157078","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty346","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty346","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/19/3385/25839476/bty346.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320308269","display_name":"Alexander von Humboldt-Stiftung","ror":"https://ror.org/012kf4317"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2804789161.pdf","grobid_xml":"https://content.openalex.org/works/W2804789161.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W1515959604","https://openalex.org/W1982228765","https://openalex.org/W2034410027","https://openalex.org/W2120671490","https://openalex.org/W2566825588","https://openalex.org/W2584459311","https://openalex.org/W2613629789","https://openalex.org/W4285719527","https://openalex.org/W6677731071","https://openalex.org/W6731961424"],"related_works":["https://openalex.org/W1557094818","https://openalex.org/W3129715955","https://openalex.org/W2183246718","https://openalex.org/W4287692494","https://openalex.org/W2099261052","https://openalex.org/W1973412793","https://openalex.org/W4292605373","https://openalex.org/W2951146195","https://openalex.org/W3047594718","https://openalex.org/W3119537175"],"abstract_inverted_index":{"Motivation:":[0],"Many":[1],"applications":[2],"monitor":[3],"predictions":[4],"of":[5,9,17,46,75],"a":[6,38,88,93,102],"whole":[7],"range":[8],"features":[10],"for":[11,79,108],"biological":[12],"datasets,":[13],"e.g.":[14],"the":[15,22,50,56,73,76,83],"fraction":[16],"secreted":[18],"human":[19,23],"proteins":[20],"in":[21],"proteome.":[24],"Results":[25],"and":[26,68,91,98,101],"error":[27],"estimates":[28,45],"are":[29,117],"typically":[30],"derived":[31],"from":[32],"publications.":[33],"Results:":[34],"Here,":[35],"we":[36],"present":[37],"simple,":[39],"alternative":[40],"approximation":[41,54],"that":[42],"uses":[43,55],"performance":[44,74],"methods":[47],"to":[48,87,92],"error-correct":[49],"predicted":[51],"distributions.":[52],"This":[53],"confusion":[57],"matrix":[58],"(TP":[59],"true":[60,63],"positives,":[61],"TN":[62],"negatives,":[64],"FP":[65],"false":[66,70],"positives":[67],"FN":[69],"negatives)":[71],"describing":[72],"prediction":[77],"tool":[78,105],"correction.":[80],"As":[81],"proof-of-principle,":[82],"correction":[84],"was":[85],"applied":[86],"two-class":[89],"(membrane/not)":[90],"seven-class":[94],"(localization)":[95],"prediction.":[96],"Availability":[97],"implementation:":[99],"Datasets":[100],"simple":[103],"JavaScript":[104],"available":[106,118],"freely":[107],"all":[109],"users":[110],"at":[111,119],"http://www.rostlab.org/services/distributions.":[112],"Supplementary":[113,115],"information:":[114],"data":[116],"Bioinformatics":[120],"online.":[121]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":4}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
