{"id":"https://openalex.org/W2801288141","doi":"https://doi.org/10.1093/bioinformatics/bty331","title":"MetaBridge: enabling network-based integrative analysis via direct protein interactors of metabolites","display_name":"MetaBridge: enabling network-based integrative analysis via direct protein interactors of metabolites","publication_year":2018,"publication_date":"2018-04-23","ids":{"openalex":"https://openalex.org/W2801288141","doi":"https://doi.org/10.1093/bioinformatics/bty331","mag":"2801288141","pmid":"https://pubmed.ncbi.nlm.nih.gov/29688253"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty331","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty331","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/18/3225/25731927/bty331.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/18/3225/25731927/bty331.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065949745","display_name":"Samuel J. Hinshaw","orcid":"https://orcid.org/0000-0002-3322-3492"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Samuel J Hinshaw","raw_affiliation_strings":["Centre for Microbial Diseases and Immunity Research, University of British Columbia, Vancouver, BC, Canada"],"affiliations":[{"raw_affiliation_string":"Centre for Microbial Diseases and Immunity Research, University of British Columbia, Vancouver, BC, Canada","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029495209","display_name":"Amy Huei\u2010Yi Lee","orcid":"https://orcid.org/0000-0003-3250-3246"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Amy H Y Lee","raw_affiliation_strings":["Centre for Microbial Diseases and Immunity Research, University of British Columbia, Vancouver, BC, Canada"],"affiliations":[{"raw_affiliation_string":"Centre for Microbial Diseases and Immunity Research, University of British Columbia, Vancouver, BC, Canada","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088561520","display_name":"Erin E. Gill","orcid":"https://orcid.org/0000-0002-4943-610X"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Erin E Gill","raw_affiliation_strings":["Centre for Microbial Diseases and Immunity Research, University of British Columbia, Vancouver, BC, Canada"],"affiliations":[{"raw_affiliation_string":"Centre for Microbial Diseases and Immunity Research, University of British Columbia, Vancouver, BC, Canada","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066530115","display_name":"Robert E. W. Hancock","orcid":"https://orcid.org/0000-0001-5989-8503"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Robert E W Hancock","raw_affiliation_strings":["Centre for Microbial Diseases and Immunity Research, University of British Columbia, Vancouver, BC, Canada"],"affiliations":[{"raw_affiliation_string":"Centre for Microbial Diseases and Immunity Research, University of British Columbia, Vancouver, BC, Canada","institution_ids":["https://openalex.org/I141945490"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5066530115"],"corresponding_institution_ids":["https://openalex.org/I141945490"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.2104,"has_fulltext":false,"cited_by_count":20,"citation_normalized_percentile":{"value":0.78737023,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"34","issue":"18","first_page":"3225","last_page":"3227"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8022331595420837},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6434804797172546},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5962224006652832},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5497300624847412},{"id":"https://openalex.org/keywords/complement","display_name":"Complement (music)","score":0.47227323055267334},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.4642506241798401},{"id":"https://openalex.org/keywords/metabolomics","display_name":"Metabolomics","score":0.45288705825805664},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.285875141620636},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.27006006240844727},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2410871684551239},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.14170852303504944},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.0925518274307251},{"id":"https://openalex.org/keywords/mutant","display_name":"Mutant","score":0.06525182723999023}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8022331595420837},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6434804797172546},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5962224006652832},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5497300624847412},{"id":"https://openalex.org/C112313634","wikidata":"https://www.wikidata.org/wiki/Q7886648","display_name":"Complement (music)","level":5,"score":0.47227323055267334},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.4642506241798401},{"id":"https://openalex.org/C21565614","wikidata":"https://www.wikidata.org/wiki/Q12149006","display_name":"Metabolomics","level":2,"score":0.45288705825805664},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.285875141620636},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.27006006240844727},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2410871684551239},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.14170852303504944},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0925518274307251},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.06525182723999023},{"id":"https://openalex.org/C188082640","wikidata":"https://www.wikidata.org/wiki/Q1780899","display_name":"Complementation","level":4,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bty331","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty331","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/18/3225/25731927/bty331.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29688253","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29688253","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty331","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty331","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/18/3225/25731927/bty331.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2075046989","display_name":null,"funder_award_id":"FDN-154287","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"}],"funders":[{"id":"https://openalex.org/F4320320994","display_name":"Canada Research Chairs","ror":"https://ror.org/0517h6h17"},{"id":"https://openalex.org/F4320322337","display_name":"Killam Trusts","ror":"https://ror.org/021cbtn85"},{"id":"https://openalex.org/F4320323180","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20"},{"id":"https://openalex.org/F4320334506","display_name":"Canadian Institutes of Health Research","ror":"https://ror.org/01gavpb45"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2801288141.pdf","grobid_xml":"https://content.openalex.org/works/W2801288141.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W1976327004","https://openalex.org/W1997062226","https://openalex.org/W2049464245","https://openalex.org/W2087700191","https://openalex.org/W2128601422","https://openalex.org/W2128733344","https://openalex.org/W2141224543","https://openalex.org/W2165439432","https://openalex.org/W2396849069","https://openalex.org/W2536987917","https://openalex.org/W2559588208","https://openalex.org/W2622731880","https://openalex.org/W2988775587","https://openalex.org/W4236875018","https://openalex.org/W6739090233"],"related_works":["https://openalex.org/W2166430819","https://openalex.org/W1906231076","https://openalex.org/W2994725613","https://openalex.org/W2039940120","https://openalex.org/W3003414789","https://openalex.org/W2162319041","https://openalex.org/W2109734607","https://openalex.org/W2483024785","https://openalex.org/W2153983119","https://openalex.org/W2035571759"],"abstract_inverted_index":{"MetaBridge":[0],"has":[1],"been":[2],"implemented":[3],"as":[4],"a":[5],"web":[6],"tool":[7],"at":[8,16],"https://www.metabridge.org,":[9],"and":[10],"the":[11],"source":[12],"code":[13],"is":[14],"available":[15],"https://github.com/samhinshaw/metabridge_shiny":[17],"(GNU":[18],"GPLv3).":[19]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2}],"updated_date":"2026-03-06T13:50:29.536080","created_date":"2025-10-10T00:00:00"}