{"id":"https://openalex.org/W2801422562","doi":"https://doi.org/10.1093/bioinformatics/bty313","title":"ImagePy: an open-source, Python-based and platform-independent software package for bioimage analysis","display_name":"ImagePy: an open-source, Python-based and platform-independent software package for bioimage analysis","publication_year":2018,"publication_date":"2018-04-26","ids":{"openalex":"https://openalex.org/W2801422562","doi":"https://doi.org/10.1093/bioinformatics/bty313","mag":"2801422562","pmid":"https://pubmed.ncbi.nlm.nih.gov/29718132"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty313","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty313","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/18/3238/48919187/bioinformatics_34_18_3238.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/18/3238/48919187/bioinformatics_34_18_3238.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032975798","display_name":"An\u2010Liang Wang","orcid":"https://orcid.org/0000-0002-6960-0501"},"institutions":[{"id":"https://openalex.org/I4210146364","display_name":"National Marine Environmental Forecasting Center","ror":"https://ror.org/047hznt06","country_code":"CN","type":"government","lineage":["https://openalex.org/I211433327","https://openalex.org/I4210127390","https://openalex.org/I4210146364"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Anliang Wang","raw_affiliation_strings":["Division of Marine Disaster Forecasting and Warning, National Marine Environmental Forecasting Center, Haidian District, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Division of Marine Disaster Forecasting and Warning, National Marine Environmental Forecasting Center, Haidian District, Beijing, China","institution_ids":["https://openalex.org/I4210146364"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070916237","display_name":"Xiaolong Yan","orcid":"https://orcid.org/0000-0003-2419-9707"},"institutions":[{"id":"https://openalex.org/I4210146364","display_name":"National Marine Environmental Forecasting Center","ror":"https://ror.org/047hznt06","country_code":"CN","type":"government","lineage":["https://openalex.org/I211433327","https://openalex.org/I4210127390","https://openalex.org/I4210146364"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiaolong Yan","raw_affiliation_strings":["Division of Marine Disaster Forecasting and Warning, National Marine Environmental Forecasting Center, Haidian District, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Division of Marine Disaster Forecasting and Warning, National Marine Environmental Forecasting Center, Haidian District, Beijing, China","institution_ids":["https://openalex.org/I4210146364"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103138399","display_name":"Zhijun Wei","orcid":"https://orcid.org/0009-0002-6877-0493"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhijun Wei","raw_affiliation_strings":["State Key Laboratory of Coastal and Offshore Engineering, Dalian University of Technology, Dalian, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Coastal and Offshore Engineering, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5070916237","https://openalex.org/A5103138399"],"corresponding_institution_ids":["https://openalex.org/I27357992","https://openalex.org/I4210146364"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":4.9053,"has_fulltext":true,"cited_by_count":52,"citation_normalized_percentile":{"value":0.95143256,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"34","issue":"18","first_page":"3238","last_page":"3240"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13650","display_name":"Computational Physics and Python Applications","score":0.989799976348877,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9858999848365784,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.8579611778259277},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.8280184268951416},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8155247569084167},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.6731425523757935},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.6421951651573181},{"id":"https://openalex.org/keywords/extensibility","display_name":"Extensibility","score":0.6296269297599792},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5695323348045349},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.5346540212631226},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.5345284938812256},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.5025854110717773},{"id":"https://openalex.org/keywords/open-source-software","display_name":"Open source software","score":0.4990365505218506},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.4971165955066681},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.4142530858516693},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3857259750366211}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.8579611778259277},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.8280184268951416},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8155247569084167},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.6731425523757935},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.6421951651573181},{"id":"https://openalex.org/C32833848","wikidata":"https://www.wikidata.org/wiki/Q4115054","display_name":"Extensibility","level":2,"score":0.6296269297599792},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5695323348045349},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.5346540212631226},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.5345284938812256},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.5025854110717773},{"id":"https://openalex.org/C2988343187","wikidata":"https://www.wikidata.org/wiki/Q1130645","display_name":"Open source software","level":3,"score":0.4990365505218506},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.4971165955066681},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.4142530858516693},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3857259750366211}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bty313","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty313","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/18/3238/48919187/bioinformatics_34_18_3238.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29718132","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29718132","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty313","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty313","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/18/3238/48919187/bioinformatics_34_18_3238.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.5400000214576721,"display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G203954899","display_name":null,"funder_award_id":"41506109","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4151663693","display_name":null,"funder_award_id":"41676189","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6128379065","display_name":null,"funder_award_id":"11602051","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8351677408","display_name":null,"funder_award_id":"DUT16LK27","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2801422562.pdf","grobid_xml":"https://content.openalex.org/works/W2801422562.grobid-xml"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W1988054515","https://openalex.org/W2005011886","https://openalex.org/W2011301426","https://openalex.org/W2015159529","https://openalex.org/W2088483605","https://openalex.org/W2099540110","https://openalex.org/W2146292423","https://openalex.org/W2154579105","https://openalex.org/W2246690291","https://openalex.org/W2467414813","https://openalex.org/W2467628122","https://openalex.org/W2559756885","https://openalex.org/W2580035316"],"related_works":["https://openalex.org/W2491403535","https://openalex.org/W2113128227","https://openalex.org/W632256878","https://openalex.org/W2104915799","https://openalex.org/W4211197663","https://openalex.org/W2061990085","https://openalex.org/W3123068371","https://openalex.org/W2885293781","https://openalex.org/W4287673983","https://openalex.org/W3081674575"],"abstract_inverted_index":{"ImagePy":[0],"is":[1],"free":[2],"and":[3,9,26],"open":[4],"source":[5],"software,":[6],"with":[7],"documentation":[8],"code":[10],"available":[11],"at":[12],"https://github.com/Image-Py/imagepy":[13],"under":[14],"the":[15,23],"BSD":[16],"license.":[17],"It":[18],"has":[19],"been":[20],"tested":[21],"on":[22],"Windows,":[24],"Mac":[25],"Linux":[27],"operating":[28],"systems.":[29]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":4}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
