{"id":"https://openalex.org/W2807954510","doi":"https://doi.org/10.1093/bioinformatics/bty261","title":"An evolutionary model motivated by physicochemical properties of amino acids reveals variation among proteins","display_name":"An evolutionary model motivated by physicochemical properties of amino acids reveals variation among proteins","publication_year":2018,"publication_date":"2018-04-12","ids":{"openalex":"https://openalex.org/W2807954510","doi":"https://doi.org/10.1093/bioinformatics/bty261","mag":"2807954510","pmid":"https://pubmed.ncbi.nlm.nih.gov/29950007"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty261","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty261","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/13/i350/25098558/bty261.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/13/i350/25098558/bty261.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087747590","display_name":"Edward L. Braun","orcid":"https://orcid.org/0000-0003-1643-5212"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Edward L Braun","raw_affiliation_strings":["Department of Biology and Genetics Institute, University of Florida, Gainesville, FL, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biology and Genetics Institute, University of Florida, Gainesville, FL, USA","institution_ids":["https://openalex.org/I33213144"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5087747590"],"corresponding_institution_ids":["https://openalex.org/I33213144"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.117,"has_fulltext":true,"cited_by_count":21,"citation_normalized_percentile":{"value":0.77541909,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"34","issue":"13","first_page":"i350","last_page":"i356"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9908000230789185,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9904000163078308,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/amino-acid","display_name":"Amino acid","score":0.7572785019874573},{"id":"https://openalex.org/keywords/variation","display_name":"Variation (astronomy)","score":0.679720401763916},{"id":"https://openalex.org/keywords/substitution","display_name":"Substitution (logic)","score":0.5932998061180115},{"id":"https://openalex.org/keywords/protein-evolution","display_name":"Protein evolution","score":0.5797034502029419},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5414635539054871},{"id":"https://openalex.org/keywords/perl","display_name":"Perl","score":0.5363961458206177},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.4334167540073395},{"id":"https://openalex.org/keywords/genetic-code","display_name":"Genetic code","score":0.4203472137451172},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.389862060546875},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.38293254375457764},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.32432717084884644},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.28868699073791504},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.25240546464920044},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.16806715726852417},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.10274824500083923},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.08192801475524902}],"concepts":[{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.7572785019874573},{"id":"https://openalex.org/C2778334786","wikidata":"https://www.wikidata.org/wiki/Q1586270","display_name":"Variation (astronomy)","level":2,"score":0.679720401763916},{"id":"https://openalex.org/C2778220771","wikidata":"https://www.wikidata.org/wiki/Q1522579","display_name":"Substitution (logic)","level":2,"score":0.5932998061180115},{"id":"https://openalex.org/C2992240565","wikidata":"https://www.wikidata.org/wiki/Q856529","display_name":"Protein evolution","level":3,"score":0.5797034502029419},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5414635539054871},{"id":"https://openalex.org/C2777002779","wikidata":"https://www.wikidata.org/wiki/Q42478","display_name":"Perl","level":2,"score":0.5363961458206177},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.4334167540073395},{"id":"https://openalex.org/C10853874","wikidata":"https://www.wikidata.org/wiki/Q180618","display_name":"Genetic code","level":3,"score":0.4203472137451172},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.389862060546875},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.38293254375457764},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.32432717084884644},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.28868699073791504},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.25240546464920044},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.16806715726852417},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.10274824500083923},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.08192801475524902},{"id":"https://openalex.org/C44870925","wikidata":"https://www.wikidata.org/wiki/Q37547","display_name":"Astrophysics","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019943","descriptor_name":"Amino Acid Substitution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019943","descriptor_name":"Amino Acid Substitution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019943","descriptor_name":"Amino Acid Substitution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bty261","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty261","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/13/i350/25098558/bty261.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29950007","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29950007","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:4991121","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6022633","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty261","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty261","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/13/i350/25098558/bty261.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2722506542","display_name":null,"funder_award_id":"1655683","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3874960311","display_name":null,"funder_award_id":"DEB-1655683","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2807954510.pdf","grobid_xml":"https://content.openalex.org/works/W2807954510.grobid-xml"},"referenced_works_count":53,"referenced_works":["https://openalex.org/W420957490","https://openalex.org/W1968371014","https://openalex.org/W1969541700","https://openalex.org/W2005083485","https://openalex.org/W2007890023","https://openalex.org/W2010026647","https://openalex.org/W2016000389","https://openalex.org/W2017519756","https://openalex.org/W2025293107","https://openalex.org/W2026551295","https://openalex.org/W2026881360","https://openalex.org/W2029549914","https://openalex.org/W2031700956","https://openalex.org/W2043066342","https://openalex.org/W2044573154","https://openalex.org/W2053549824","https://openalex.org/W2062018285","https://openalex.org/W2076704852","https://openalex.org/W2076793571","https://openalex.org/W2081112743","https://openalex.org/W2085950302","https://openalex.org/W2087956168","https://openalex.org/W2096641211","https://openalex.org/W2102424972","https://openalex.org/W2106669588","https://openalex.org/W2109846272","https://openalex.org/W2110330633","https://openalex.org/W2111647009","https://openalex.org/W2116111392","https://openalex.org/W2117059491","https://openalex.org/W2119837484","https://openalex.org/W2121729179","https://openalex.org/W2126917299","https://openalex.org/W2134057866","https://openalex.org/W2134116181","https://openalex.org/W2138910980","https://openalex.org/W2145608399","https://openalex.org/W2147307434","https://openalex.org/W2150097277","https://openalex.org/W2156851899","https://openalex.org/W2163627198","https://openalex.org/W2167406239","https://openalex.org/W2169689430","https://openalex.org/W2266439690","https://openalex.org/W2303869673","https://openalex.org/W2601425645","https://openalex.org/W2766813858","https://openalex.org/W2771760123","https://openalex.org/W4206702770","https://openalex.org/W4230357098","https://openalex.org/W4233815609","https://openalex.org/W6654563908","https://openalex.org/W6663773076"],"related_works":["https://openalex.org/W2078639853","https://openalex.org/W2806175837","https://openalex.org/W2094855123","https://openalex.org/W1986643014","https://openalex.org/W1968074222","https://openalex.org/W2143210482","https://openalex.org/W2019951524","https://openalex.org/W2057360636","https://openalex.org/W2029705747","https://openalex.org/W2902123980"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
