{"id":"https://openalex.org/W2810701990","doi":"https://doi.org/10.1093/bioinformatics/bty231","title":"NeuroMorphoVis: a collaborative framework for analysis and visualization of neuronal morphology skeletons reconstructed from microscopy stacks","display_name":"NeuroMorphoVis: a collaborative framework for analysis and visualization of neuronal morphology skeletons reconstructed from microscopy stacks","publication_year":2018,"publication_date":"2018-04-20","ids":{"openalex":"https://openalex.org/W2810701990","doi":"https://doi.org/10.1093/bioinformatics/bty231","mag":"2810701990","pmid":"https://pubmed.ncbi.nlm.nih.gov/29949998"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty231","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty231","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/13/i574/25098456/bty231.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/13/i574/25098456/bty231.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020521236","display_name":"Marwan Abdellah","orcid":"https://orcid.org/0000-0002-7549-9657"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Marwan Abdellah","raw_affiliation_strings":["Blue Brain Project (BBP), \u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Blue Brain Project (BBP), \u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060822874","display_name":"Juan Hernando","orcid":"https://orcid.org/0000-0002-8562-8213"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Juan Hernando","raw_affiliation_strings":["Blue Brain Project (BBP), \u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Blue Brain Project (BBP), \u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068088058","display_name":"Stefan Eilemann","orcid":"https://orcid.org/0000-0002-1510-1109"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Stefan Eilemann","raw_affiliation_strings":["Blue Brain Project (BBP), \u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Blue Brain Project (BBP), \u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039348396","display_name":"Samuel Lapere","orcid":"https://orcid.org/0000-0002-4207-2622"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Samuel Lapere","raw_affiliation_strings":["Blue Brain Project (BBP), \u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Blue Brain Project (BBP), \u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074634249","display_name":"Nicolas Antille","orcid":"https://orcid.org/0000-0002-4063-4492"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Nicolas Antille","raw_affiliation_strings":["Blue Brain Project (BBP), \u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Blue Brain Project (BBP), \u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069964239","display_name":"Henry Markram","orcid":"https://orcid.org/0000-0001-6164-2590"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Henry Markram","raw_affiliation_strings":["Blue Brain Project (BBP), \u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Blue Brain Project (BBP), \u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088028124","display_name":"Felix Sch\u00fcrmann","orcid":null},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Felix Sch\u00fcrmann","raw_affiliation_strings":["Blue Brain Project (BBP), \u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Blue Brain Project (BBP), \u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland","institution_ids":["https://openalex.org/I5124864"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5088028124"],"corresponding_institution_ids":["https://openalex.org/I5124864"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":5.3953,"has_fulltext":true,"cited_by_count":74,"citation_normalized_percentile":{"value":0.95755729,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"34","issue":"13","first_page":"i574","last_page":"i582"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.921500027179718,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.921500027179718,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.022600000724196434,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.01549999974668026,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7804152965545654},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7771952152252197},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.7470634579658508},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.6279048323631287},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6239069104194641},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5896672010421753},{"id":"https://openalex.org/keywords/extensibility","display_name":"Extensibility","score":0.5371281504631042},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.5318182706832886},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5166902542114258},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.4633536636829376},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.4431186318397522},{"id":"https://openalex.org/keywords/tracing","display_name":"Tracing","score":0.41157227754592896},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2745310068130493},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.27379167079925537},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.12445250153541565}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7804152965545654},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7771952152252197},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.7470634579658508},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.6279048323631287},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6239069104194641},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5896672010421753},{"id":"https://openalex.org/C32833848","wikidata":"https://www.wikidata.org/wiki/Q4115054","display_name":"Extensibility","level":2,"score":0.5371281504631042},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.5318182706832886},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5166902542114258},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.4633536636829376},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.4431186318397522},{"id":"https://openalex.org/C138673069","wikidata":"https://www.wikidata.org/wiki/Q322229","display_name":"Tracing","level":2,"score":0.41157227754592896},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2745310068130493},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.27379167079925537},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.12445250153541565},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/bty231","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty231","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/13/i574/25098456/bty231.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29949998","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29949998","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:doc.rero.ch:333086","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400148","display_name":"reroDoc Digital Library","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:europepmc.org:4991096","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6022592","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:infoscience.epfl.ch:259466","is_oa":true,"landing_page_url":"https://infoscience.epfl.ch/handle/20.500.14299/150639","pdf_url":null,"source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"WoS","raw_type":"research article"},{"id":"pmh:oai:repository.kaust.edu.sa:10754/629786","is_oa":true,"landing_page_url":"http://hdl.handle.net/10754/629786","pdf_url":null,"source":{"id":"https://openalex.org/S4306401596","display_name":"King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71920554","host_organization_name":"King Abdullah University of Science and Technology","host_organization_lineage":["https://openalex.org/I71920554"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty231","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty231","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/13/i574/25098456/bty231.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322320","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2810701990.pdf","grobid_xml":"https://content.openalex.org/works/W2810701990.grobid-xml"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W174441044","https://openalex.org/W1021722217","https://openalex.org/W1587492535","https://openalex.org/W1596936080","https://openalex.org/W1897592488","https://openalex.org/W1898703532","https://openalex.org/W1921182138","https://openalex.org/W1962710288","https://openalex.org/W1973195069","https://openalex.org/W1974710869","https://openalex.org/W1993556615","https://openalex.org/W1999149787","https://openalex.org/W2004430398","https://openalex.org/W2018227909","https://openalex.org/W2021213638","https://openalex.org/W2028055236","https://openalex.org/W2028941104","https://openalex.org/W2029532682","https://openalex.org/W2039842874","https://openalex.org/W2042967751","https://openalex.org/W2044648261","https://openalex.org/W2053083724","https://openalex.org/W2061186544","https://openalex.org/W2067118720","https://openalex.org/W2074633779","https://openalex.org/W2086646090","https://openalex.org/W2094540904","https://openalex.org/W2096916130","https://openalex.org/W2097548116","https://openalex.org/W2099676980","https://openalex.org/W2104827963","https://openalex.org/W2110918734","https://openalex.org/W2114240651","https://openalex.org/W2119848151","https://openalex.org/W2127882138","https://openalex.org/W2133258871","https://openalex.org/W2143816834","https://openalex.org/W2152564840","https://openalex.org/W2156012604","https://openalex.org/W2161065048","https://openalex.org/W2167869362","https://openalex.org/W2464755955","https://openalex.org/W2588400862","https://openalex.org/W2734512521","https://openalex.org/W2950200460","https://openalex.org/W4232417653","https://openalex.org/W4241614188","https://openalex.org/W6999330942"],"related_works":["https://openalex.org/W1948607442","https://openalex.org/W4247766898","https://openalex.org/W2044615423","https://openalex.org/W2361584951","https://openalex.org/W3004004161","https://openalex.org/W2365327041","https://openalex.org/W4244765761","https://openalex.org/W4225348249","https://openalex.org/W2048180534","https://openalex.org/W2624709009"],"abstract_inverted_index":{"Motivation:":[0],"From":[1],"image":[2],"stacks":[3],"to":[4,15,28,143],"computational":[5],"models,":[6],"processing":[7],"digital":[8,73],"representations":[9],"of":[10,35,47,75,87,96,115,128,131,147,154],"neuronal":[11,76,132,148],"morphologies":[12,49],"is":[13,50,54,85,117,141,204],"essential":[14],"neuroscientific":[16],"research.":[17],"Workflows":[18],"involve":[19],"various":[20],"techniques":[21],"and":[22,30,39,45,65,71,89,101,108,134,160,165,181,197,201,208,224],"tools,":[23],"leading":[24],"in":[25,109,155,206],"certain":[26],"cases":[27],"convoluted":[29],"fragmented":[31],"pipelines.":[32],"The":[33,113,123,162,177,212],"existence":[34],"an":[36,62,187],"integrated,":[37],"extensible":[38,64,188],"free":[40],"framework":[41,67,84,140,213],"for":[42,68,106,150],"processing,":[43],"analysis":[44,202],"visualization":[46,180],"those":[48],"a":[51,218,225],"challenge":[52],"that":[53],"still":[55],"largely":[56],"unfulfilled.":[57],"Results:":[58],"We":[59],"present":[60],"NeuroMorphoVis,":[61],"interactive,":[63],"cross-platform":[66],"building,":[69],"visualizing":[70],"analyzing":[72],"reconstructions":[74],"morphology":[77],"skeletons":[78],"extracted":[79],"from":[80,217],"microscopy":[81],"stacks.":[82],"Our":[83],"capable":[86],"detecting":[88],"repairing":[90],"tracing":[91],"artifacts,":[92],"allowing":[93],"the":[94,126,135,139,173,198],"generation":[95],"high":[97,102],"fidelity":[98],"surface":[99,182],"meshes":[100],"resolution":[103],"volumetric":[104,145],"models":[105,146],"simulation":[107],"silico":[110],"imaging":[111,157],"studies.":[112,122],"applicability":[114],"NeuroMorphoVis":[116],"demonstrated":[118],"with":[119],"two":[120],"case":[121],"first":[124],"simulates":[125],"construction":[127],"three-dimensional":[129],"profiles":[130],"somata":[133],"other":[136],"highlights":[137],"how":[138],"leveraged":[142],"create":[144],"circuits":[149],"simulating":[151],"different":[152],"types":[153],"vitro":[156],"experiments.":[158],"Availability":[159],"implementation:":[161],"source":[163],"code":[164,203],"documentation":[166],"are":[167,184,215,235],"freely":[168],"available":[169,236],"on":[170,195],"https://github.com/BlueBrain/NeuroMorphoVis":[171],"under":[172],"GNU":[174],"public":[175],"license.":[176],"morphological":[178],"analysis,":[179],"meshing":[183],"implemented":[185],"as":[186],"Python":[189],"API":[190],"(Application":[191],"Programming":[192],"Interface)":[193,223],"based":[194],"Blender,":[196],"volume":[199],"reconstruction":[200],"written":[205],"C++":[207],"parallelized":[209],"using":[210],"OpenMP.":[211],"features":[214],"accessible":[216],"user-friendly":[219],"GUI":[220],"(Graphical":[221],"User":[222],"rich":[226],"CLI":[227],"(Command":[228],"Line":[229],"Interface).":[230],"Supplementary":[231,233],"information:":[232],"data":[234],"at":[237],"Bioinformatics":[238],"online.":[239]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":23},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
