{"id":"https://openalex.org/W2949564348","doi":"https://doi.org/10.1093/bioinformatics/bty206","title":"The latent geometry of the human protein interaction network","display_name":"The latent geometry of the human protein interaction network","publication_year":2018,"publication_date":"2018-04-03","ids":{"openalex":"https://openalex.org/W2949564348","doi":"https://doi.org/10.1093/bioinformatics/bty206","mag":"2949564348","pmid":"https://pubmed.ncbi.nlm.nih.gov/29635317"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty206","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty206","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/16/2826/48918242/bioinformatics_34_16_2826.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/16/2826/48918242/bioinformatics_34_16_2826.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027888740","display_name":"Gregorio Alanis\u2010Lobato","orcid":"https://orcid.org/0000-0001-9339-4229"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]},{"id":"https://openalex.org/I4210165538","display_name":"Institute of Molecular Biology","ror":"https://ror.org/05kxtq558","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210165538"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Gregorio Alanis-Lobato","raw_affiliation_strings":["Institute of Molecular Biology, Mainz, Germany","Institute of Organismic and Molecular Evolution, Faculty of Biology, Johannes Gutenberg Universit\u00e4t, Mainz, Germany"],"raw_orcid":"https://orcid.org/0000-0001-9339-4229","affiliations":[{"raw_affiliation_string":"Institute of Molecular Biology, Mainz, Germany","institution_ids":["https://openalex.org/I4210165538"]},{"raw_affiliation_string":"Institute of Organismic and Molecular Evolution, Faculty of Biology, Johannes Gutenberg Universit\u00e4t, Mainz, Germany","institution_ids":["https://openalex.org/I197323543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079122723","display_name":"Pablo Mier","orcid":"https://orcid.org/0000-0003-3663-2352"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]},{"id":"https://openalex.org/I4210165538","display_name":"Institute of Molecular Biology","ror":"https://ror.org/05kxtq558","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210165538"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Pablo Mier","raw_affiliation_strings":["Institute of Molecular Biology, Mainz, Germany","Institute of Organismic and Molecular Evolution, Faculty of Biology, Johannes Gutenberg Universit\u00e4t, Mainz, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Molecular Biology, Mainz, Germany","institution_ids":["https://openalex.org/I4210165538"]},{"raw_affiliation_string":"Institute of Organismic and Molecular Evolution, Faculty of Biology, Johannes Gutenberg Universit\u00e4t, Mainz, Germany","institution_ids":["https://openalex.org/I197323543"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010178662","display_name":"Miguel A. Andrade\u2010Navarro","orcid":"https://orcid.org/0000-0001-6650-1711"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]},{"id":"https://openalex.org/I4210165538","display_name":"Institute of Molecular Biology","ror":"https://ror.org/05kxtq558","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210165538"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Miguel Andrade-Navarro","raw_affiliation_strings":["Institute of Molecular Biology, Mainz, Germany","Institute of Organismic and Molecular Evolution, Faculty of Biology, Johannes Gutenberg Universit\u00e4t, Mainz, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Molecular Biology, Mainz, Germany","institution_ids":["https://openalex.org/I4210165538"]},{"raw_affiliation_string":"Institute of Organismic and Molecular Evolution, Faculty of Biology, Johannes Gutenberg Universit\u00e4t, Mainz, Germany","institution_ids":["https://openalex.org/I197323543"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5010178662","https://openalex.org/A5027888740"],"corresponding_institution_ids":["https://openalex.org/I197323543","https://openalex.org/I4210165538"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.2391,"has_fulltext":true,"cited_by_count":42,"citation_normalized_percentile":{"value":0.79643653,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"34","issue":"16","first_page":"2826","last_page":"2834"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.917900025844574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.917900025844574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12536","display_name":"Topological and Geometric Data Analysis","score":0.011800000444054604,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.010599999688565731,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.6709012389183044},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6284425854682922},{"id":"https://openalex.org/keywords/hyperbolic-geometry","display_name":"Hyperbolic geometry","score":0.6251074075698853},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.452971875667572},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4492985010147095},{"id":"https://openalex.org/keywords/routing","display_name":"Routing (electronic design automation)","score":0.428505003452301},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.42130768299102783},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.4028453826904297},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.33185964822769165},{"id":"https://openalex.org/keywords/geometry","display_name":"Geometry","score":0.31956273317337036},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.22031426429748535},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19167926907539368},{"id":"https://openalex.org/keywords/algebraic-geometry","display_name":"Algebraic geometry","score":0.1614682972431183},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.10521748661994934}],"concepts":[{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.6709012389183044},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6284425854682922},{"id":"https://openalex.org/C206352148","wikidata":"https://www.wikidata.org/wiki/Q209306","display_name":"Hyperbolic geometry","level":3,"score":0.6251074075698853},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.452971875667572},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4492985010147095},{"id":"https://openalex.org/C74172769","wikidata":"https://www.wikidata.org/wiki/Q1446839","display_name":"Routing (electronic design automation)","level":2,"score":0.428505003452301},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.42130768299102783},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.4028453826904297},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.33185964822769165},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.31956273317337036},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.22031426429748535},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19167926907539368},{"id":"https://openalex.org/C68363185","wikidata":"https://www.wikidata.org/wiki/Q180969","display_name":"Algebraic geometry","level":2,"score":0.1614682972431183},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.10521748661994934},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/bty206","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty206","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/16/2826/48918242/bioinformatics_34_16_2826.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29635317","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29635317","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:5038007","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6084611","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6084611","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6084611","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty206","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty206","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/16/2826/48918242/bioinformatics_34_16_2826.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322301","display_name":"Johannes Gutenberg-Universit\u00e4t Mainz","ror":"https://ror.org/023b0x485"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2949564348.pdf","grobid_xml":"https://content.openalex.org/works/W2949564348.grobid-xml"},"referenced_works_count":73,"referenced_works":["https://openalex.org/W1484811165","https://openalex.org/W1494453148","https://openalex.org/W1556758605","https://openalex.org/W1890754837","https://openalex.org/W1915671731","https://openalex.org/W1967073403","https://openalex.org/W1971215074","https://openalex.org/W1977382765","https://openalex.org/W1980940295","https://openalex.org/W1984567848","https://openalex.org/W1987860480","https://openalex.org/W1989277387","https://openalex.org/W1989506884","https://openalex.org/W1997535872","https://openalex.org/W2001141328","https://openalex.org/W2009405916","https://openalex.org/W2011340259","https://openalex.org/W2012034410","https://openalex.org/W2012747660","https://openalex.org/W2013248580","https://openalex.org/W2023407460","https://openalex.org/W2043469923","https://openalex.org/W2050583899","https://openalex.org/W2054648441","https://openalex.org/W2057065397","https://openalex.org/W2062533676","https://openalex.org/W2066692087","https://openalex.org/W2096804616","https://openalex.org/W2098412979","https://openalex.org/W2099913238","https://openalex.org/W2103017472","https://openalex.org/W2126997165","https://openalex.org/W2131681506","https://openalex.org/W2133465414","https://openalex.org/W2135553161","https://openalex.org/W2136061536","https://openalex.org/W2137804845","https://openalex.org/W2139070508","https://openalex.org/W2140502208","https://openalex.org/W2144344817","https://openalex.org/W2147330086","https://openalex.org/W2148762636","https://openalex.org/W2149363804","https://openalex.org/W2154454189","https://openalex.org/W2155004936","https://openalex.org/W2156718197","https://openalex.org/W2159482845","https://openalex.org/W2163736554","https://openalex.org/W2167597870","https://openalex.org/W2171273050","https://openalex.org/W2194756172","https://openalex.org/W2264309847","https://openalex.org/W2317662115","https://openalex.org/W2335024046","https://openalex.org/W2405235696","https://openalex.org/W2500138264","https://openalex.org/W2534390616","https://openalex.org/W2555618718","https://openalex.org/W2564084673","https://openalex.org/W2594030753","https://openalex.org/W2613629789","https://openalex.org/W2616561032","https://openalex.org/W2770983033","https://openalex.org/W2951551173","https://openalex.org/W2963553326","https://openalex.org/W2963775176","https://openalex.org/W2977677513","https://openalex.org/W3037085755","https://openalex.org/W3037110710","https://openalex.org/W3099768174","https://openalex.org/W4294216483","https://openalex.org/W6682755970","https://openalex.org/W6713728514"],"related_works":["https://openalex.org/W156833103","https://openalex.org/W2036515887","https://openalex.org/W2138855350","https://openalex.org/W1997704023","https://openalex.org/W2062195135","https://openalex.org/W1983076684","https://openalex.org/W2032618524","https://openalex.org/W2973883076","https://openalex.org/W4238436155","https://openalex.org/W4241306449"],"abstract_inverted_index":{"Motivation:":[0],"A":[1],"series":[2],"of":[3,13,21,70,88,127,152,170,189,205],"recently":[4],"introduced":[5],"algorithms":[6],"and":[7,64,80,99,105,174,184],"models":[8],"advocates":[9],"for":[10,124,201],"the":[11,18,25,59,67,86,89,92,125,149,153,167,202,206],"existence":[12],"a":[14,32,97,143,198],"hyperbolic":[15,62,94,115],"geometry":[16,41,151],"underlying":[17],"network":[19,29,191],"representation":[20,87],"complex":[22,33],"systems.":[23],"Since":[24],"human":[26],"protein":[27,77,129],"interaction":[28],"(hPIN)":[30],"has":[31],"architecture,":[34],"we":[35,132],"hypothesized":[36],"that":[37,66,85,134,157],"uncovering":[38],"its":[39],"latent":[40,150],"could":[42],"ease":[43],"challenging":[44],"problems":[45],"in":[46,91],"systems":[47],"biology,":[48],"translating":[49],"them":[50],"into":[51],"measuring":[52],"distances":[53,116],"between":[54,117],"proteins.":[55],"Results:":[56],"We":[57,108,155],"embedded":[58],"hPIN":[60,90,207],"to":[61,102,113,165,175],"space":[63],"found":[65],"inferred":[68],"coordinates":[69,112],"nodes":[71],"capture":[72],"biologically":[73],"relevant":[74],"features,":[75],"like":[76],"age,":[78],"function":[79],"cellular":[81],"localization.":[82],"This":[83],"means":[84],"two-dimensional":[93],"plane":[95],"offers":[96],"novel":[98],"informative":[100],"way":[101],"visualize":[103],"proteins":[104,135],"their":[106,181],"interactions.":[107,130],"then":[109],"used":[110,164],"these":[111,158],"compute":[114],"proteins,":[118],"which":[119],"served":[120],"as":[121],"likelihood":[122],"scores":[123],"prediction":[126],"plausible":[128],"Finally,":[131],"observed":[133],"can":[136,162],"efficiently":[137],"communicate":[138],"with":[139],"each":[140],"other":[141],"via":[142],"greedy":[144],"routing":[145],"process,":[146],"guided":[147],"by":[148],"hPIN.":[154],"show":[156],"efficient":[159],"communication":[160],"channels":[161],"be":[163],"determine":[166],"core":[168],"members":[169],"signal":[171],"transduction":[172],"pathways":[173],"study":[176],"how":[177],"system":[178],"perturbations":[179],"impact":[180],"efficiency.":[182],"Availability":[183],"implementation:":[185],"An":[186],"R":[187],"implementation":[188],"our":[190],"embedder":[192],"is":[193],"available":[194,218],"at":[195,211,219],"https://github.com/galanisl/NetHypGeom.":[196],"Also,":[197],"web":[199],"tool":[200],"geometric":[203],"analysis":[204],"accompanies":[208],"this":[209],"text":[210],"http://cbdm-01.zdv.uni-mainz.de/~galanisl/gapi.":[212],"Supplementary":[213,215],"information:":[214],"data":[216],"are":[217],"Bioinformatics":[220],"online.":[221]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":1}],"updated_date":"2026-08-08T07:41:36.138363","created_date":"2025-10-10T00:00:00"}
