{"id":"https://openalex.org/W2964065200","doi":"https://doi.org/10.1093/bioinformatics/bty187","title":"LSMM: a statistical approach to integrating functional annotations with genome-wide association studies","display_name":"LSMM: a statistical approach to integrating functional annotations with genome-wide association studies","publication_year":2018,"publication_date":"2018-03-27","ids":{"openalex":"https://openalex.org/W2964065200","doi":"https://doi.org/10.1093/bioinformatics/bty187","mag":"2964065200","pmid":"https://pubmed.ncbi.nlm.nih.gov/29608640"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty187","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty187","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/16/2788/48917327/bioinformatics_34_16_2788.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/16/2788/48917327/bioinformatics_34_16_2788.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046180690","display_name":"Jingsi Ming","orcid":"https://orcid.org/0000-0001-7059-4156"},"institutions":[{"id":"https://openalex.org/I141568987","display_name":"Hong Kong Baptist University","ror":"https://ror.org/0145fw131","country_code":"HK","type":"education","lineage":["https://openalex.org/I141568987"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Jingsi Ming","raw_affiliation_strings":["Department of Mathematics, Hong Kong Baptist University, Hong Kong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Hong Kong Baptist University, Hong Kong","institution_ids":["https://openalex.org/I141568987"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Mingwei Dai","orcid":null},"institutions":[{"id":"https://openalex.org/I200769079","display_name":"Hong Kong University of Science and Technology","ror":"https://ror.org/00q4vv597","country_code":"HK","type":"education","lineage":["https://openalex.org/I200769079"]},{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN","HK"],"is_corresponding":false,"raw_author_name":"Mingwei Dai","raw_affiliation_strings":["Department of Mathematics, The Hong Kong University of Science and Technology, Hong Kong","School of Mathematics and Statistics, Xi\u2019an Jiaotong University, Xi\u2019an, China","School of Mathematics and Statistics, Xi'an Jiaotong University, Xi'an, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, The Hong Kong University of Science and Technology, Hong Kong","institution_ids":["https://openalex.org/I200769079"]},{"raw_affiliation_string":"School of Mathematics and Statistics, Xi\u2019an Jiaotong University, Xi\u2019an, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"School of Mathematics and Statistics, Xi'an Jiaotong University, Xi'an, China","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025606994","display_name":"Mingxuan Cai","orcid":"https://orcid.org/0000-0003-4011-8292"},"institutions":[{"id":"https://openalex.org/I141568987","display_name":"Hong Kong Baptist University","ror":"https://ror.org/0145fw131","country_code":"HK","type":"education","lineage":["https://openalex.org/I141568987"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Mingxuan Cai","raw_affiliation_strings":["Department of Mathematics, Hong Kong Baptist University, Hong Kong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Hong Kong Baptist University, Hong Kong","institution_ids":["https://openalex.org/I141568987"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030367905","display_name":"Xiang Wan","orcid":"https://orcid.org/0000-0002-2324-6527"},"institutions":[{"id":"https://openalex.org/I4210099586","display_name":"Shenzhen Research Institute of Big Data","ror":"https://ror.org/00z1gwf89","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210099586"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiang Wan","raw_affiliation_strings":["Shenzhen Research Institute of Big Data, Shenzhen, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shenzhen Research Institute of Big Data, Shenzhen, China","institution_ids":["https://openalex.org/I4210099586"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033553707","display_name":"Jin Liu","orcid":"https://orcid.org/0000-0002-5707-2078"},"institutions":[{"id":"https://openalex.org/I4210126319","display_name":"Duke-NUS Medical School","ror":"https://ror.org/02j1m6098","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596","https://openalex.org/I170897317","https://openalex.org/I4210126319"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"Jin Liu","raw_affiliation_strings":["Centre for Quantitative Medicine, Duke-NUS Medical School, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Quantitative Medicine, Duke-NUS Medical School, Singapore","institution_ids":["https://openalex.org/I4210126319"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5029104097","display_name":"Can Yang","orcid":"https://orcid.org/0000-0002-4407-3055"},"institutions":[{"id":"https://openalex.org/I200769079","display_name":"Hong Kong University of Science and Technology","ror":"https://ror.org/00q4vv597","country_code":"HK","type":"education","lineage":["https://openalex.org/I200769079"]}],"countries":["HK"],"is_corresponding":true,"raw_author_name":"Can Yang","raw_affiliation_strings":["Department of Mathematics, The Hong Kong University of Science and Technology, Hong Kong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, The Hong Kong University of Science and Technology, Hong Kong","institution_ids":["https://openalex.org/I200769079"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5029104097","https://openalex.org/A5033553707"],"corresponding_institution_ids":["https://openalex.org/I200769079","https://openalex.org/I4210126319"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":1.1381,"has_fulltext":true,"cited_by_count":23,"citation_normalized_percentile":{"value":0.80898169,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"34","issue":"16","first_page":"2788","last_page":"2796"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10845","display_name":"Advanced Causal Inference Techniques","score":0.0003000000142492354,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.0003000000142492354,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome-wide-association-study","display_name":"Genome-wide association study","score":0.5787002444267273},{"id":"https://openalex.org/keywords/association","display_name":"Association (psychology)","score":0.5535302758216858},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5366951823234558},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5296998620033264},{"id":"https://openalex.org/keywords/genetic-association","display_name":"Genetic association","score":0.46666520833969116},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.30313819646835327},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3017798662185669},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.18814823031425476},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.17614132165908813},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11672338843345642},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.10901197791099548}],"concepts":[{"id":"https://openalex.org/C106208931","wikidata":"https://www.wikidata.org/wiki/Q1098876","display_name":"Genome-wide association study","level":5,"score":0.5787002444267273},{"id":"https://openalex.org/C142853389","wikidata":"https://www.wikidata.org/wiki/Q744778","display_name":"Association (psychology)","level":2,"score":0.5535302758216858},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5366951823234558},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5296998620033264},{"id":"https://openalex.org/C186413461","wikidata":"https://www.wikidata.org/wiki/Q744727","display_name":"Genetic association","level":5,"score":0.46666520833969116},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.30313819646835327},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3017798662185669},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.18814823031425476},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.17614132165908813},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11672338843345642},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.10901197791099548},{"id":"https://openalex.org/C542102704","wikidata":"https://www.wikidata.org/wiki/Q183257","display_name":"Psychotherapist","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bty187","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty187","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/16/2788/48917327/bioinformatics_34_16_2788.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29608640","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29608640","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:repository.hkust.edu.hk:1783.1-89973","is_oa":false,"landing_page_url":"https://repository.hkust.edu.hk/ir/Record/1783.1-89973","pdf_url":null,"source":{"id":"https://openalex.org/S4306401796","display_name":"Rare & Special e-Zone (The Hong Kong University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I200769079","host_organization_name":"Hong Kong University of Science and Technology","host_organization_lineage":["https://openalex.org/I200769079"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty187","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty187","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/16/2788/48917327/bioinformatics_34_16_2788.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2886399175","display_name":null,"funder_award_id":"R9405","funder_id":"https://openalex.org/F4320323537","funder_display_name":"Hong Kong University of Science and Technology"},{"id":"https://openalex.org/G4071393848","display_name":null,"funder_award_id":"MOE2016-T2-2-029","funder_id":"https://openalex.org/F4320320751","funder_display_name":"Ministry of Education - Singapore"},{"id":"https://openalex.org/G4956433258","display_name":null,"funder_award_id":"-T2-2-029","funder_id":"https://openalex.org/F4320320751","funder_display_name":"Ministry of Education - Singapore"},{"id":"https://openalex.org/G563338676","display_name":null,"funder_award_id":"61501389","funder_id":"https://openalex.org/F4320320751","funder_display_name":"Ministry of Education - Singapore"},{"id":"https://openalex.org/G6027846787","display_name":null,"funder_award_id":"R-913-200-098-263","funder_id":"https://openalex.org/F4320316262","funder_display_name":"Duke-NUS Medical School"},{"id":"https://openalex.org/G6587149068","display_name":null,"funder_award_id":"MOE2016-T2-2-029","funder_id":"https://openalex.org/F4320323537","funder_display_name":"Hong Kong University of Science and Technology"},{"id":"https://openalex.org/G663580435","display_name":null,"funder_award_id":"MOE2016-T2-2-029","funder_id":"https://openalex.org/F4320316262","funder_display_name":"Duke-NUS Medical School"},{"id":"https://openalex.org/G7805870020","display_name":null,"funder_award_id":"KQTD2015033114415450","funder_id":"https://openalex.org/F4320335803","funder_display_name":"Shenzhen Fundamental Research and Discipline Layout project"}],"funders":[{"id":"https://openalex.org/F4320316262","display_name":"Duke-NUS Medical School","ror":"https://ror.org/02j1m6098"},{"id":"https://openalex.org/F4320320751","display_name":"Ministry of Education - Singapore","ror":"https://ror.org/01kcva023"},{"id":"https://openalex.org/F4320323537","display_name":"Hong Kong University of Science and Technology","ror":"https://ror.org/00q4vv597"},{"id":"https://openalex.org/F4320335803","display_name":"Shenzhen Fundamental Research and Discipline Layout project","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2964065200.pdf","grobid_xml":"https://content.openalex.org/works/W2964065200.grobid-xml"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W1496451467","https://openalex.org/W1844405070","https://openalex.org/W1865111710","https://openalex.org/W1904407543","https://openalex.org/W1984068087","https://openalex.org/W1989590412","https://openalex.org/W1993588417","https://openalex.org/W2040547343","https://openalex.org/W2054344444","https://openalex.org/W2056524260","https://openalex.org/W2070184242","https://openalex.org/W2076154138","https://openalex.org/W2080235308","https://openalex.org/W2086799994","https://openalex.org/W2101357408","https://openalex.org/W2101429325","https://openalex.org/W2112848098","https://openalex.org/W2113594760","https://openalex.org/W2113784410","https://openalex.org/W2115779804","https://openalex.org/W2115807273","https://openalex.org/W2116868464","https://openalex.org/W2121323687","https://openalex.org/W2139852278","https://openalex.org/W2139852368","https://openalex.org/W2142161268","https://openalex.org/W2143625465","https://openalex.org/W2152325859","https://openalex.org/W2153118028","https://openalex.org/W2161527093","https://openalex.org/W2163749231","https://openalex.org/W2244701831","https://openalex.org/W2259938310","https://openalex.org/W2315138803","https://openalex.org/W2346626662","https://openalex.org/W2400331635","https://openalex.org/W2511363188","https://openalex.org/W2592518050","https://openalex.org/W2626606138","https://openalex.org/W2638382976","https://openalex.org/W2748535180","https://openalex.org/W2794573350","https://openalex.org/W2950649723","https://openalex.org/W2951713221","https://openalex.org/W3100378224","https://openalex.org/W4251698791","https://openalex.org/W6668260176","https://openalex.org/W6712476658","https://openalex.org/W6785504203"],"related_works":["https://openalex.org/W2594299395","https://openalex.org/W2066467839","https://openalex.org/W2111842731","https://openalex.org/W2170506381","https://openalex.org/W2765794416","https://openalex.org/W2039666944","https://openalex.org/W1531630856","https://openalex.org/W1486217206","https://openalex.org/W1992310781","https://openalex.org/W2794350630"],"abstract_inverted_index":{"Motivation:":[0],"Thousands":[1],"of":[2,31,35,41,63,85,96,133,154,158,185,195,234,237],"risk":[3,86,135],"variants":[4,75,87,155],"underlying":[5],"complex":[6,36,64,68,196,239],"phenotypes":[7,197],"(quantitative":[8],"traits":[9],"and":[10,48,156,172,204,227,242],"diseases)":[11],"have":[12],"been":[13],"identified":[14],"in":[15,45],"genome-wide":[16],"association":[17],"studies":[18,180],"(GWAS).":[19],"However,":[20],"there":[21],"are":[22,44,255],"still":[23,53],"two":[24],"major":[25],"challenges":[26],"towards":[27],"deepening":[28],"our":[29,218],"understanding":[30,233],"the":[32,39,61,104,130,183,211],"genetic":[33,235],"architectures":[34],"phenotypes.":[37,240],"First,":[38],"majority":[40],"GWAS":[42,59,123,194],"hits":[43],"non-coding":[46],"region":[47],"their":[49],"biological":[50,141],"interpretation":[51],"is":[52,70,247],"unclear.":[54],"Second,":[55],"accumulating":[56],"evidence":[57],"from":[58,210],"suggests":[60],"polygenicity":[62],"traits,":[65],"i.e.":[66],"a":[67,82,112],"trait":[69],"often":[71],"affected":[72],"by":[73,143],"many":[74],"with":[76,88,122,199],"small":[77,89],"or":[78],"moderate":[79],"effects,":[80],"whereas":[81],"large":[83],"proportion":[84],"effects":[90],"remain":[91],"unknown.":[92],"Results:":[93],"The":[94,214,244],"availability":[95],"functional":[97,120,146,159,208],"annotation":[98],"data":[99,254],"enables":[100],"us":[101],"to":[102,118,152,181,191],"address":[103],"above":[105],"challenges.":[106],"In":[107],"this":[108],"study,":[109],"we":[110,161,188],"propose":[111],"latent":[113],"sparse":[114],"mixed":[115],"model":[116,169],"(LSMM)":[117],"integrate":[119],"annotations":[121,203,209],"data.":[124],"Not":[125],"only":[126],"does":[127],"it":[128,190],"increase":[129],"statistical":[131,173,222],"power":[132,223],"identifying":[134],"variants,":[136],"but":[137],"also":[138],"offers":[139],"more":[140,221],"insights":[142],"detecting":[144],"relevant":[145],"annotations.":[147],"To":[148],"allow":[149],"LSMM":[150,245],"scalable":[151],"millions":[153],"hundreds":[157],"annotations,":[160],"developed":[162],"an":[163],"efficient":[164],"variational":[165],"expectation-maximization":[166],"algorithm":[167],"for":[168],"parameter":[170],"estimation":[171],"inference.":[174],"We":[175],"first":[176],"conducted":[177],"comprehensive":[178],"simulation":[179],"evaluate":[182],"performance":[184],"LSMM.":[186],"Then":[187],"applied":[189],"analyze":[192],"30":[193],"integrated":[198],"nine":[200],"genic":[201],"category":[202],"127":[205],"cell-type":[206],"specific":[207],"Roadmap":[212],"project.":[213],"results":[215],"demonstrate":[216],"that":[217],"method":[219],"possesses":[220],"than":[224],"conventional":[225],"methods,":[226],"can":[228],"help":[229],"researchers":[230],"achieve":[231],"deeper":[232],"architecture":[236],"these":[238],"Availability":[241],"implementation:":[243],"software":[246],"available":[248,256],"at":[249,257],"https://github.com/mingjingsi/LSMM.":[250],"Supplementary":[251,253],"information:":[252],"Bioinformatics":[258],"online.":[259]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
