{"id":"https://openalex.org/W2791848964","doi":"https://doi.org/10.1093/bioinformatics/bty179","title":"Deep learning improves antimicrobial peptide recognition","display_name":"Deep learning improves antimicrobial peptide recognition","publication_year":2018,"publication_date":"2018-03-23","ids":{"openalex":"https://openalex.org/W2791848964","doi":"https://doi.org/10.1093/bioinformatics/bty179","mag":"2791848964","pmid":"https://pubmed.ncbi.nlm.nih.gov/29590297"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty179","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty179","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/16/2740/25441968/bty179.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/16/2740/25441968/bty179.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044587037","display_name":"Daniel Veltri","orcid":"https://orcid.org/0000-0002-6101-6693"},"institutions":[{"id":"https://openalex.org/I4210134534","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210134534"]},{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Daniel Veltri","raw_affiliation_strings":["Bioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, U.S. National Institutes of Health, Rockville, MD, USA","Medical Science & Computing, LLC, Rockville, MD, USA"],"affiliations":[{"raw_affiliation_string":"Bioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, U.S. National Institutes of Health, Rockville, MD, USA","institution_ids":["https://openalex.org/I4210134534","https://openalex.org/I1299303238"]},{"raw_affiliation_string":"Medical Science & Computing, LLC, Rockville, MD, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076724368","display_name":"Uday Kamath","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Uday Kamath","raw_affiliation_strings":["Digital Reasoning, McLean, VA, USA"],"affiliations":[{"raw_affiliation_string":"Digital Reasoning, McLean, VA, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044722808","display_name":"Amarda Shehu","orcid":"https://orcid.org/0000-0001-5230-4610"},"institutions":[{"id":"https://openalex.org/I162714631","display_name":"George Mason University","ror":"https://ror.org/02jqj7156","country_code":"US","type":"education","lineage":["https://openalex.org/I162714631"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Amarda Shehu","raw_affiliation_strings":["Department of Bioengineering, George Mason University, Fairfax, VA, USA","Department of Computer Science, George Mason University, Fairfax, VA, USA","School of Systems Biology, George Mason University, Manassas, VA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, George Mason University, Fairfax, VA, USA","institution_ids":["https://openalex.org/I162714631"]},{"raw_affiliation_string":"Department of Computer Science, George Mason University, Fairfax, VA, USA","institution_ids":["https://openalex.org/I162714631"]},{"raw_affiliation_string":"School of Systems Biology, George Mason University, Manassas, VA, USA","institution_ids":["https://openalex.org/I162714631"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5044587037","https://openalex.org/A5044722808"],"corresponding_institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I162714631","https://openalex.org/I4210134534"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":21.8036,"has_fulltext":false,"cited_by_count":558,"citation_normalized_percentile":{"value":0.99781609,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"34","issue":"16","first_page":"2740","last_page":"2747"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/antimicrobial","display_name":"Antimicrobial","score":0.6731897592544556},{"id":"https://openalex.org/keywords/antimicrobial-peptides","display_name":"Antimicrobial peptides","score":0.5833004713058472},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5384746193885803},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.528092086315155},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5009670257568359},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.420900821685791},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3391486704349518},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3364502787590027},{"id":"https://openalex.org/keywords/microbiology","display_name":"Microbiology","score":0.2635738253593445},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22686725854873657},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.15682107210159302}],"concepts":[{"id":"https://openalex.org/C4937899","wikidata":"https://www.wikidata.org/wiki/Q68541106","display_name":"Antimicrobial","level":2,"score":0.6731897592544556},{"id":"https://openalex.org/C540938839","wikidata":"https://www.wikidata.org/wiki/Q1201508","display_name":"Antimicrobial peptides","level":3,"score":0.5833004713058472},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5384746193885803},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.528092086315155},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5009670257568359},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.420900821685791},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3391486704349518},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3364502787590027},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.2635738253593445},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22686725854873657},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.15682107210159302}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000890","descriptor_name":"Anti-Infective Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D000890","descriptor_name":"Anti-Infective Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D000890","descriptor_name":"Anti-Infective Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/bty179","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty179","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/16/2740/25441968/bty179.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29590297","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29590297","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:5038009","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6084614","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6084614","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6084614","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty179","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty179","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/16/2740/25441968/bty179.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2230820996","display_name":null,"funder_award_id":"1144106","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2791848964.pdf","grobid_xml":"https://content.openalex.org/works/W2791848964.grobid-xml"},"referenced_works_count":55,"referenced_works":["https://openalex.org/W215810951","https://openalex.org/W233046358","https://openalex.org/W1554187497","https://openalex.org/W1848835470","https://openalex.org/W1964557084","https://openalex.org/W1976178947","https://openalex.org/W1981705708","https://openalex.org/W1988581590","https://openalex.org/W1996881001","https://openalex.org/W1997868832","https://openalex.org/W1998064689","https://openalex.org/W2005708641","https://openalex.org/W2006617902","https://openalex.org/W2011301426","https://openalex.org/W2011427439","https://openalex.org/W2059136964","https://openalex.org/W2059422848","https://openalex.org/W2064675550","https://openalex.org/W2076063813","https://openalex.org/W2083416546","https://openalex.org/W2094389762","https://openalex.org/W2095705004","https://openalex.org/W2097606916","https://openalex.org/W2101234009","https://openalex.org/W2110367804","https://openalex.org/W2110459646","https://openalex.org/W2112862199","https://openalex.org/W2117767830","https://openalex.org/W2122364000","https://openalex.org/W2128495797","https://openalex.org/W2129115651","https://openalex.org/W2130253098","https://openalex.org/W2136145671","https://openalex.org/W2136848157","https://openalex.org/W2138913996","https://openalex.org/W2145957695","https://openalex.org/W2150593711","https://openalex.org/W2157825442","https://openalex.org/W2175270296","https://openalex.org/W2187089797","https://openalex.org/W2243910093","https://openalex.org/W2521028284","https://openalex.org/W2525580669","https://openalex.org/W2555630365","https://openalex.org/W2559655401","https://openalex.org/W2582743722","https://openalex.org/W2588467130","https://openalex.org/W2919115771","https://openalex.org/W3102751229","https://openalex.org/W4242318543","https://openalex.org/W4293196852","https://openalex.org/W6674330103","https://openalex.org/W6675354045","https://openalex.org/W6679247479","https://openalex.org/W6842402754"],"related_works":["https://openalex.org/W2027352683","https://openalex.org/W1973192249","https://openalex.org/W2354039930","https://openalex.org/W4375855538","https://openalex.org/W2388831772","https://openalex.org/W3087020980","https://openalex.org/W2107525095","https://openalex.org/W4211241221","https://openalex.org/W2511368942","https://openalex.org/W4380075502"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":46},{"year":2025,"cited_by_count":102},{"year":2024,"cited_by_count":118},{"year":2023,"cited_by_count":85},{"year":2022,"cited_by_count":63},{"year":2021,"cited_by_count":61},{"year":2020,"cited_by_count":47},{"year":2019,"cited_by_count":28},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":1}],"updated_date":"2026-04-18T07:56:08.524223","created_date":"2025-10-10T00:00:00"}