{"id":"https://openalex.org/W2794164646","doi":"https://doi.org/10.1093/bioinformatics/bty170","title":"SCOTCH: subtype A coreceptor tropism classification in HIV-1","display_name":"SCOTCH: subtype A coreceptor tropism classification in HIV-1","publication_year":2018,"publication_date":"2018-03-15","ids":{"openalex":"https://openalex.org/W2794164646","doi":"https://doi.org/10.1093/bioinformatics/bty170","mag":"2794164646","pmid":"https://pubmed.ncbi.nlm.nih.gov/29554213"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty170","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty170","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/15/2575/25230857/bty170.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/15/2575/25230857/bty170.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039479748","display_name":"Hannah F. L\u00f6chel","orcid":"https://orcid.org/0000-0003-3515-570X"},"institutions":[{"id":"https://openalex.org/I161103922","display_name":"Philipps University of Marburg","ror":"https://ror.org/01rdrb571","country_code":"DE","type":"education","lineage":["https://openalex.org/I161103922"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Hannah F L\u00f6chel","raw_affiliation_strings":["Department of Mathematics and Computer Science, Philipps-University of Marburg, Marburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, Philipps-University of Marburg, Marburg, Germany","institution_ids":["https://openalex.org/I161103922"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103405558","display_name":"Mona Riemenschneider","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mona Riemenschneider","raw_affiliation_strings":["Department of Bioinformatics, TUM Campus Straubing, Straubing, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, TUM Campus Straubing, Straubing, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060795824","display_name":"Dmitrij Frishman","orcid":"https://orcid.org/0000-0002-9006-4707"},"institutions":[{"id":"https://openalex.org/I212220629","display_name":"Peter the Great St. Petersburg Polytechnic University","ror":"https://ror.org/02x91aj62","country_code":"RU","type":"education","lineage":["https://openalex.org/I212220629"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE","RU"],"is_corresponding":false,"raw_author_name":"Dmitrij Frishman","raw_affiliation_strings":["Department of Genome-Oriented Bioinformatics, Technical University of Munich, Freising, Germany","Laboratory of Bioinformatics, St. Petersburg State Polytechnic University, St. Petersburg, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genome-Oriented Bioinformatics, Technical University of Munich, Freising, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Laboratory of Bioinformatics, St. Petersburg State Polytechnic University, St. Petersburg, Russia","institution_ids":["https://openalex.org/I212220629"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060650201","display_name":"Dominik Heider","orcid":"https://orcid.org/0000-0002-3108-8311"},"institutions":[{"id":"https://openalex.org/I161103922","display_name":"Philipps University of Marburg","ror":"https://ror.org/01rdrb571","country_code":"DE","type":"education","lineage":["https://openalex.org/I161103922"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Dominik Heider","raw_affiliation_strings":["Department of Mathematics and Computer Science, Philipps-University of Marburg, Marburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, Philipps-University of Marburg, Marburg, Germany","institution_ids":["https://openalex.org/I161103922"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5060650201"],"corresponding_institution_ids":["https://openalex.org/I161103922"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.6222,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":{"value":0.81009927,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"34","issue":"15","first_page":"2575","last_page":"2580"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.9724000096321106,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.9724000096321106,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11532","display_name":"Chemokine receptors and signaling","score":0.005100000184029341,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.002400000113993883,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/tropism","display_name":"Tropism","score":0.9182289838790894},{"id":"https://openalex.org/keywords/maraviroc","display_name":"Maraviroc","score":0.7223811149597168},{"id":"https://openalex.org/keywords/tissue-tropism","display_name":"Tissue tropism","score":0.6375684142112732},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.6046882271766663},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5507597923278809},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5457656979560852},{"id":"https://openalex.org/keywords/v3-loop","display_name":"V3 loop","score":0.5047706365585327},{"id":"https://openalex.org/keywords/human-immunodeficiency-virus","display_name":"Human immunodeficiency virus (HIV)","score":0.4581429660320282},{"id":"https://openalex.org/keywords/cxcr4","display_name":"CXCR4","score":0.4534800052642822},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.3833247423171997},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24442678689956665},{"id":"https://openalex.org/keywords/receptor","display_name":"Receptor","score":0.18503731489181519},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12612253427505493},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.1099657416343689},{"id":"https://openalex.org/keywords/chemokine","display_name":"Chemokine","score":0.0730905532836914}],"concepts":[{"id":"https://openalex.org/C35693153","wikidata":"https://www.wikidata.org/wiki/Q239762","display_name":"Tropism","level":3,"score":0.9182289838790894},{"id":"https://openalex.org/C2778899366","wikidata":"https://www.wikidata.org/wiki/Q421369","display_name":"Maraviroc","level":3,"score":0.7223811149597168},{"id":"https://openalex.org/C33602714","wikidata":"https://www.wikidata.org/wiki/Q7809666","display_name":"Tissue tropism","level":4,"score":0.6375684142112732},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.6046882271766663},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5507597923278809},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5457656979560852},{"id":"https://openalex.org/C2779921545","wikidata":"https://www.wikidata.org/wiki/Q12085358","display_name":"V3 loop","level":4,"score":0.5047706365585327},{"id":"https://openalex.org/C3013748606","wikidata":"https://www.wikidata.org/wiki/Q15787","display_name":"Human immunodeficiency virus (HIV)","level":2,"score":0.4581429660320282},{"id":"https://openalex.org/C129470790","wikidata":"https://www.wikidata.org/wiki/Q415718","display_name":"CXCR4","level":4,"score":0.4534800052642822},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.3833247423171997},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24442678689956665},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.18503731489181519},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12612253427505493},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.1099657416343689},{"id":"https://openalex.org/C13373296","wikidata":"https://www.wikidata.org/wiki/Q421866","display_name":"Chemokine","level":3,"score":0.0730905532836914}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D015699","descriptor_name":"HIV Envelope Protein gp120","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015699","descriptor_name":"HIV Envelope Protein gp120","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015699","descriptor_name":"HIV Envelope Protein gp120","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019713","descriptor_name":"Receptors, CCR5","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D019713","descriptor_name":"Receptors, CCR5","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D019713","descriptor_name":"Receptors, CCR5","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D019713","descriptor_name":"Receptors, CCR5","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019713","descriptor_name":"Receptors, CCR5","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019713","descriptor_name":"Receptors, CCR5","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019718","descriptor_name":"Receptors, CXCR4","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019718","descriptor_name":"Receptors, CXCR4","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019718","descriptor_name":"Receptors, CXCR4","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056189","descriptor_name":"Viral Tropism","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056189","descriptor_name":"Viral Tropism","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056189","descriptor_name":"Viral Tropism","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D065100","descriptor_name":"CCR5 Receptor Antagonists","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D065100","descriptor_name":"CCR5 Receptor Antagonists","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D065100","descriptor_name":"CCR5 Receptor Antagonists","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bty170","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty170","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/15/2575/25230857/bty170.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29554213","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29554213","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty170","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty170","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/15/2575/25230857/bty170.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.8299999833106995,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G7282099374","display_name":null,"funder_award_id":"5-14-00026","funder_id":"https://openalex.org/F4320324099","funder_display_name":"Russian Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320320875","display_name":"Deutscher Akademischer Austauschdienst","ror":"https://ror.org/039djdh30"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320324099","display_name":"Russian Science Foundation","ror":"https://ror.org/03y2gwe85"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2794164646.pdf","grobid_xml":"https://content.openalex.org/works/W2794164646.grobid-xml"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W28412257","https://openalex.org/W1900729316","https://openalex.org/W1975304761","https://openalex.org/W1976466060","https://openalex.org/W1976493037","https://openalex.org/W1984865885","https://openalex.org/W1996835973","https://openalex.org/W1997827211","https://openalex.org/W1999048558","https://openalex.org/W2005346945","https://openalex.org/W2006617902","https://openalex.org/W2029582401","https://openalex.org/W2035095808","https://openalex.org/W2036206152","https://openalex.org/W2045949915","https://openalex.org/W2047399603","https://openalex.org/W2053088580","https://openalex.org/W2065283382","https://openalex.org/W2066480278","https://openalex.org/W2067925490","https://openalex.org/W2089135598","https://openalex.org/W2092926517","https://openalex.org/W2101550580","https://openalex.org/W2104275641","https://openalex.org/W2104551758","https://openalex.org/W2105307973","https://openalex.org/W2114903401","https://openalex.org/W2115629999","https://openalex.org/W2132926880","https://openalex.org/W2141386958","https://openalex.org/W2145126338","https://openalex.org/W2146672876","https://openalex.org/W2149531726","https://openalex.org/W2152026267","https://openalex.org/W2152327272","https://openalex.org/W2154319440","https://openalex.org/W2168661372","https://openalex.org/W2169054534","https://openalex.org/W2344221688","https://openalex.org/W2588098830","https://openalex.org/W2911964244"],"related_works":["https://openalex.org/W2020056247","https://openalex.org/W2790559265","https://openalex.org/W4383426296","https://openalex.org/W1888155289","https://openalex.org/W2103138322","https://openalex.org/W2128056683","https://openalex.org/W564696312","https://openalex.org/W2147544546","https://openalex.org/W1974470921","https://openalex.org/W2129650377"],"abstract_inverted_index":{"Motivation:":[0],"The":[1],"V3":[2,36],"loop":[3],"of":[4,8,30,58,62,65,77,84,106,120,146,194],"the":[5,9,27,31,44,47,59,75,104,118,121,178,198],"gp120":[6,24],"glycoprotein":[7],"Human":[10],"Immunodeficiency":[11],"Virus":[12],"1":[13],"(HIV-1)":[14],"is":[15,50,64,140],"considered":[16],"to":[17,43,125,160,205,213],"be":[18,211,227],"responsible":[19],"for":[20,68,74,131,155,166,183,218],"viral":[21],"coreceptor":[22,49,60,78,216],"tropism.":[23],"interacts":[25],"with":[26],"CD4":[28],"receptor":[29],"host":[32],"cell":[33],"and":[34,95,149,173,180,200,208,223],"subsequently":[35],"binds":[37],"either":[38],"CCR5":[39,48],"or":[40],"CXCR4.":[41],"Due":[42],"fact":[45],"that":[46,103],"targeted":[51],"by":[52],"entry":[53],"inhibitors,":[54],"a":[55,127,143,151],"reliable":[56,128],"prediction":[57,76,105,129,190],"usage":[61],"HIV-1":[63],"great":[66],"interest":[67],"antiretroviral":[69],"therapy.":[70],"Although":[71],"several":[72,101],"methods":[73],"tropism":[79,184,217],"are":[80,114],"available,":[81],"almost":[82],"all":[83],"them":[85],"have":[86],"been":[87,98],"developed":[88],"based":[89,141],"on":[90,142],"only":[91],"subtype":[92,111,132,156,219],"B":[93],"sequences,":[94,108,113],"it":[96],"has":[97],"shown":[99],"in":[100,109,177,192],"studies":[102],"non-B":[107],"particular":[110,165],"A":[112,133,157,220],"less":[115],"reliable.":[116],"Thus,":[117],"aim":[119],"current":[122],"study":[123],"was":[124],"develop":[126],"model":[130,138],"viruses.":[134],"Results:":[135],"Our":[136],"new":[137],"SCOTCH":[139,186,225],"stacking":[144],"approach":[145],"classifier":[147],"ensembles":[148],"shows":[150,187],"significantly":[152,188],"better":[153,189],"performance":[154],"sequences":[158],"compared":[159,204],"other":[161],"available":[162],"models.":[163],"In":[164],"low":[167],"false":[168],"positive":[169],"rates":[170],"(between":[171],"0.05":[172],"0.2,":[174],"i.e.":[175],"recommendation":[176],"German":[179],"European":[181],"Guidelines":[182],"prediction),":[185],"performances":[191],"terms":[193],"partial":[195],"area":[196],"under":[197],"curves":[199],"diagnostic":[201],"odds":[202],"ratios":[203],"existing":[206],"tools,":[207],"thus":[209],"can":[210,226],"used":[212],"reliably":[214],"predict":[215],"sequences.":[221],"Availability":[222],"implementation:":[224],"downloaded/accessed":[228],"at":[229],"http://www.heiderlab.de.":[230]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
