{"id":"https://openalex.org/W2794597619","doi":"https://doi.org/10.1093/bioinformatics/bty151","title":"SimPhospho: a software tool enabling confident phosphosite assignment","display_name":"SimPhospho: a software tool enabling confident phosphosite assignment","publication_year":2018,"publication_date":"2018-03-26","ids":{"openalex":"https://openalex.org/W2794597619","doi":"https://doi.org/10.1093/bioinformatics/bty151","mag":"2794597619","pmid":"https://pubmed.ncbi.nlm.nih.gov/29596608"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty151","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty151","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/15/2690/25230797/bty151.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/15/2690/25230797/bty151.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076105965","display_name":"Veronika Suni","orcid":"https://orcid.org/0000-0001-8269-7291"},"institutions":[{"id":"https://openalex.org/I4210140120","display_name":"Turku Centre for Biotechnology","ror":"https://ror.org/0421ba211","country_code":"FI","type":"facility","lineage":["https://openalex.org/I4210140120"]},{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I183173800","display_name":"Turku Centre for Computer Science","ror":"https://ror.org/00vy7ed73","country_code":"FI","type":"facility","lineage":["https://openalex.org/I130217899","https://openalex.org/I155660961","https://openalex.org/I183173800"]},{"id":"https://openalex.org/I130217899","display_name":"\u00c5bo Akademi University","ror":"https://ror.org/029pk6x14","country_code":"FI","type":"education","lineage":["https://openalex.org/I130217899"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Veronika Suni","raw_affiliation_strings":["Bioinformatics Unit, Turku Centre for Biotechnology, University of Turku and \u00c5bo Akademi University, Tykist\u00f6katu 6, FI-20520 Turku, Finland","TUCS \u2013 Turku Centre for Computer Science, FI-20500 Turku, Finland"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Unit, Turku Centre for Biotechnology, University of Turku and \u00c5bo Akademi University, Tykist\u00f6katu 6, FI-20520 Turku, Finland","institution_ids":["https://openalex.org/I155660961","https://openalex.org/I130217899","https://openalex.org/I4210140120"]},{"raw_affiliation_string":"TUCS \u2013 Turku Centre for Computer Science, FI-20500 Turku, Finland","institution_ids":["https://openalex.org/I183173800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082176570","display_name":"Tomi Suomi","orcid":"https://orcid.org/0000-0003-3639-979X"},"institutions":[{"id":"https://openalex.org/I130217899","display_name":"\u00c5bo Akademi University","ror":"https://ror.org/029pk6x14","country_code":"FI","type":"education","lineage":["https://openalex.org/I130217899"]},{"id":"https://openalex.org/I4210140120","display_name":"Turku Centre for Biotechnology","ror":"https://ror.org/0421ba211","country_code":"FI","type":"facility","lineage":["https://openalex.org/I4210140120"]},{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Tomi Suomi","raw_affiliation_strings":["Bioinformatics Unit, Turku Centre for Biotechnology, University of Turku and \u00c5bo Akademi University, Tykist\u00f6katu 6, FI-20520 Turku, Finland"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Unit, Turku Centre for Biotechnology, University of Turku and \u00c5bo Akademi University, Tykist\u00f6katu 6, FI-20520 Turku, Finland","institution_ids":["https://openalex.org/I155660961","https://openalex.org/I130217899","https://openalex.org/I4210140120"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012184627","display_name":"Tomoya Tsubosaka","orcid":null},"institutions":[{"id":"https://openalex.org/I96636082","display_name":"Meijo University","ror":"https://ror.org/04h42fc75","country_code":"JP","type":"education","lineage":["https://openalex.org/I96636082"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tomoya Tsubosaka","raw_affiliation_strings":["Faculty of Pharmacy, Meijo University, Nagoya, Japan"],"affiliations":[{"raw_affiliation_string":"Faculty of Pharmacy, Meijo University, Nagoya, Japan","institution_ids":["https://openalex.org/I96636082"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060620295","display_name":"Susumu Y. Imanishi","orcid":"https://orcid.org/0000-0002-3641-4390"},"institutions":[{"id":"https://openalex.org/I96636082","display_name":"Meijo University","ror":"https://ror.org/04h42fc75","country_code":"JP","type":"education","lineage":["https://openalex.org/I96636082"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Susumu Y Imanishi","raw_affiliation_strings":["Faculty of Pharmacy, Meijo University, Nagoya, Japan"],"affiliations":[{"raw_affiliation_string":"Faculty of Pharmacy, Meijo University, Nagoya, Japan","institution_ids":["https://openalex.org/I96636082"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062339398","display_name":"Laura L. Elo","orcid":"https://orcid.org/0000-0001-5648-4532"},"institutions":[{"id":"https://openalex.org/I4210140120","display_name":"Turku Centre for Biotechnology","ror":"https://ror.org/0421ba211","country_code":"FI","type":"facility","lineage":["https://openalex.org/I4210140120"]},{"id":"https://openalex.org/I130217899","display_name":"\u00c5bo Akademi University","ror":"https://ror.org/029pk6x14","country_code":"FI","type":"education","lineage":["https://openalex.org/I130217899"]},{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Laura L Elo","raw_affiliation_strings":["Bioinformatics Unit, Turku Centre for Biotechnology, University of Turku and \u00c5bo Akademi University, Tykist\u00f6katu 6, FI-20520 Turku, Finland"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Unit, Turku Centre for Biotechnology, University of Turku and \u00c5bo Akademi University, Tykist\u00f6katu 6, FI-20520 Turku, Finland","institution_ids":["https://openalex.org/I155660961","https://openalex.org/I130217899","https://openalex.org/I4210140120"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040594335","display_name":"Garry L. Corthals","orcid":"https://orcid.org/0000-0001-9423-5596"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Garry L Corthals","raw_affiliation_strings":["Van't Hoff Institute of Molecular Sciences, 1090 GS Amsterdam, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Van't Hoff Institute of Molecular Sciences, 1090 GS Amsterdam, The Netherlands","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5040594335","https://openalex.org/A5076105965"],"corresponding_institution_ids":["https://openalex.org/I130217899","https://openalex.org/I155660961","https://openalex.org/I183173800","https://openalex.org/I4210140120"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.5418,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.6024463,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"34","issue":"15","first_page":"2690","last_page":"2692"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8000531196594238},{"id":"https://openalex.org/keywords/phosphopeptide","display_name":"Phosphopeptide","score":0.7993882894515991},{"id":"https://openalex.org/keywords/usability","display_name":"Usability","score":0.706551194190979},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6729639768600464},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5996518135070801},{"id":"https://openalex.org/keywords/phosphoproteomics","display_name":"Phosphoproteomics","score":0.5397014021873474},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.47552016377449036},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.4364522099494934},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.4233798086643219},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.40577614307403564},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.32956892251968384},{"id":"https://openalex.org/keywords/phosphorylation","display_name":"Phosphorylation","score":0.32458552718162537},{"id":"https://openalex.org/keywords/protein-phosphorylation","display_name":"Protein phosphorylation","score":0.26404672861099243},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.258355975151062},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13641458749771118}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8000531196594238},{"id":"https://openalex.org/C2779933727","wikidata":"https://www.wikidata.org/wiki/Q7187535","display_name":"Phosphopeptide","level":3,"score":0.7993882894515991},{"id":"https://openalex.org/C170130773","wikidata":"https://www.wikidata.org/wiki/Q216378","display_name":"Usability","level":2,"score":0.706551194190979},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6729639768600464},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5996518135070801},{"id":"https://openalex.org/C6675166","wikidata":"https://www.wikidata.org/wiki/Q7187538","display_name":"Phosphoproteomics","level":5,"score":0.5397014021873474},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.47552016377449036},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.4364522099494934},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.4233798086643219},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.40577614307403564},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.32956892251968384},{"id":"https://openalex.org/C11960822","wikidata":"https://www.wikidata.org/wiki/Q242736","display_name":"Phosphorylation","level":2,"score":0.32458552718162537},{"id":"https://openalex.org/C87325107","wikidata":"https://www.wikidata.org/wiki/Q7251493","display_name":"Protein phosphorylation","level":4,"score":0.26404672861099243},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.258355975151062},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13641458749771118},{"id":"https://openalex.org/C97029542","wikidata":"https://www.wikidata.org/wiki/Q281417","display_name":"Protein kinase A","level":3,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D010748","descriptor_name":"Phosphopeptides","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D010748","descriptor_name":"Phosphopeptides","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D010748","descriptor_name":"Phosphopeptides","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1093/bioinformatics/bty151","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty151","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/15/2690/25230797/bty151.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29596608","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29596608","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:dare.uva.nl:openaire_cris_publications/eeb3115e-82a0-4040-8294-e20e06546cc7","is_oa":false,"landing_page_url":"https://handle.uba.uva.nl/personal/pure/en/publications/simphospho-a-software-tool-enabling-confident-phosphosite-assignment(eeb3115e-82a0-4040-8294-e20e06546cc7).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400088","display_name":"UvA-DARE (University of Amsterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I887064364","host_organization_name":"University of Amsterdam","host_organization_lineage":["https://openalex.org/I887064364"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Suni, V, Suomi, T, Tsubosaka, T, Imanishi, S Y, Elo, L L & Corthals, G L 2018, 'SimPhospho: a software tool enabling confident phosphosite assignment', Bioinformatics, vol. 34, no. 15, pp. 2690-2692. https://doi.org/10.1093/bioinformatics/bty151","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:researchbank.acu.edu.au:fhs_pub-15632","is_oa":true,"landing_page_url":"https://researchbank.acu.edu.au/fhs_pub/14634","pdf_url":null,"source":{"id":"https://openalex.org/S4306401783","display_name":"Research Bank (Australian Catholic University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I86695891","host_organization_name":"Australian Catholic University","host_organization_lineage":["https://openalex.org/I86695891"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty of Health Sciences Publications","raw_type":"text"},{"id":"pmh:oai:dare.uva.nl:publications/eeb3115e-82a0-4040-8294-e20e06546cc7","is_oa":false,"landing_page_url":"http://hdl.handle.net/11245.1/eeb3115e-82a0-4040-8294-e20e06546cc7","pdf_url":null,"source":{"id":"https://openalex.org/S4306400088","display_name":"UvA-DARE (University of Amsterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I887064364","host_organization_name":"University of Amsterdam","host_organization_lineage":["https://openalex.org/I887064364"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Suni, V, Suomi, T, Tsubosaka, T, Imanishi, S Y, Elo, L L & Corthals, G L 2018, 'SimPhospho: a software tool enabling confident phosphosite assignment', Bioinformatics, vol. 34, no. 15, pp. 2690-2692. https://doi.org/10.1093/bioinformatics/bty151","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:europepmc.org:5027388","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6061695","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:www.utupub.fi:10024/161248","is_oa":false,"landing_page_url":"https://www.utupub.fi/handle/10024/161248","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:uvapub:oai:dare.uva.nl:publications/eeb3115e-82a0-4040-8294-e20e06546cc7","is_oa":true,"landing_page_url":"https://dare.uva.nl/personal/pure/en/publications/simphospho-a-software-tool-enabling-confident-phosphosite-assignment(eeb3115e-82a0-4040-8294-e20e06546cc7).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 34(15), 2690 - 2692. Oxford University Press","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty151","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty151","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/15/2690/25230797/bty151.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.5400000214576721,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G20194130","display_name":null,"funder_award_id":"16K08206","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G234615612","display_name":null,"funder_award_id":"JP16K08206","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G2997648695","display_name":null,"funder_award_id":"070325","funder_id":"https://openalex.org/F4320322885","funder_display_name":"NordForsk"},{"id":"https://openalex.org/G3060148298","display_name":null,"funder_award_id":"310561","funder_id":"https://openalex.org/F4320321108","funder_display_name":"Academy of Finland"},{"id":"https://openalex.org/G3672309020","display_name":"\u56fd\u969b\u91d1\u878d\u3068\u91d1","funder_award_id":"31056","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G4428230132","display_name":"Tools to translate proteomes to human health and diagnostics","funder_award_id":"310561","funder_id":"https://openalex.org/F4320321108","funder_display_name":"Academy of Finland"},{"id":"https://openalex.org/G7310732631","display_name":null,"funder_award_id":"128712","funder_id":"https://openalex.org/F4320321108","funder_display_name":"Academy of Finland"},{"id":"https://openalex.org/G7752643416","display_name":null,"funder_award_id":"Japan","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G872430211","display_name":null,"funder_award_id":"304995","funder_id":"https://openalex.org/F4320321108","funder_display_name":"Academy of Finland"}],"funders":[{"id":"https://openalex.org/F4320321108","display_name":"Academy of Finland","ror":"https://ror.org/05k73zm37"},{"id":"https://openalex.org/F4320322885","display_name":"NordForsk","ror":"https://ror.org/05bqzfg94"},{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2794597619.pdf","grobid_xml":"https://content.openalex.org/works/W2794597619.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W1986873950","https://openalex.org/W1993450321","https://openalex.org/W2011953977","https://openalex.org/W2027974246","https://openalex.org/W2073229999","https://openalex.org/W2087481305","https://openalex.org/W2089273345","https://openalex.org/W2104726963","https://openalex.org/W2112078820","https://openalex.org/W2130706354","https://openalex.org/W2132899146","https://openalex.org/W2150893146","https://openalex.org/W2166872160","https://openalex.org/W2169414169","https://openalex.org/W2325375737"],"related_works":["https://openalex.org/W2055152749","https://openalex.org/W2762736481","https://openalex.org/W2411165827","https://openalex.org/W2368752600","https://openalex.org/W4293353519","https://openalex.org/W2419449679","https://openalex.org/W2109482992","https://openalex.org/W2593991541","https://openalex.org/W2472905461","https://openalex.org/W2013999682"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
