{"id":"https://openalex.org/W2757805629","doi":"https://doi.org/10.1093/bioinformatics/bty113","title":"Updating the 97% identity threshold for 16S ribosomal RNA OTUs","display_name":"Updating the 97% identity threshold for 16S ribosomal RNA OTUs","publication_year":2018,"publication_date":"2018-02-27","ids":{"openalex":"https://openalex.org/W2757805629","doi":"https://doi.org/10.1093/bioinformatics/bty113","mag":"2757805629","pmid":"https://pubmed.ncbi.nlm.nih.gov/29506021"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty113","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty113","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/14/2371/25138283/bty113.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/14/2371/25138283/bty113.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077667471","display_name":"R. C. Edgar","orcid":"https://orcid.org/0000-0001-7355-2541"},"institutions":[{"id":"https://openalex.org/I4210091371","display_name":"Fort Ross Conservancy","ror":"https://ror.org/00fpr8c10","country_code":"US","type":"other","lineage":["https://openalex.org/I4210091371"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Robert C Edgar","raw_affiliation_strings":["Sonoma, CA, USA"],"affiliations":[{"raw_affiliation_string":"Sonoma, CA, USA","institution_ids":["https://openalex.org/I4210091371"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5077667471"],"corresponding_institution_ids":["https://openalex.org/I4210091371"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":29.7886,"has_fulltext":true,"cited_by_count":729,"citation_normalized_percentile":{"value":0.99835716,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"34","issue":"14","first_page":"2371","last_page":"2375"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9916999936103821,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/hypervariable-region","display_name":"Hypervariable region","score":0.7605923414230347},{"id":"https://openalex.org/keywords/16s-ribosomal-rna","display_name":"16S ribosomal RNA","score":0.6948428750038147},{"id":"https://openalex.org/keywords/ribosomal-rna","display_name":"Ribosomal RNA","score":0.6784846782684326},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.6649063229560852},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5533322691917419},{"id":"https://openalex.org/keywords/metric","display_name":"Metric (unit)","score":0.5266150236129761},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4642430543899536},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4383181631565094},{"id":"https://openalex.org/keywords/identity","display_name":"Identity (music)","score":0.4375683665275574},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3598238229751587},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.34751570224761963},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.29336318373680115},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2183329463005066}],"concepts":[{"id":"https://openalex.org/C81566733","wikidata":"https://www.wikidata.org/wiki/Q1047544","display_name":"Hypervariable region","level":3,"score":0.7605923414230347},{"id":"https://openalex.org/C42062724","wikidata":"https://www.wikidata.org/wiki/Q1209205","display_name":"16S ribosomal RNA","level":3,"score":0.6948428750038147},{"id":"https://openalex.org/C67905577","wikidata":"https://www.wikidata.org/wiki/Q215980","display_name":"Ribosomal RNA","level":3,"score":0.6784846782684326},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.6649063229560852},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5533322691917419},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.5266150236129761},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4642430543899536},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4383181631565094},{"id":"https://openalex.org/C2778355321","wikidata":"https://www.wikidata.org/wiki/Q17079427","display_name":"Identity (music)","level":2,"score":0.4375683665275574},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3598238229751587},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.34751570224761963},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.29336318373680115},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2183329463005066},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020459","descriptor_name":"Genes, rRNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020459","descriptor_name":"Genes, rRNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020459","descriptor_name":"Genes, rRNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bty113","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty113","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/14/2371/25138283/bty113.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29506021","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29506021","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty113","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty113","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/14/2371/25138283/bty113.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.550000011920929,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2757805629.pdf","grobid_xml":"https://content.openalex.org/works/W2757805629.grobid-xml"},"referenced_works_count":46,"referenced_works":["https://openalex.org/W1515226261","https://openalex.org/W1551672964","https://openalex.org/W1846216853","https://openalex.org/W1988925586","https://openalex.org/W2000072710","https://openalex.org/W2030154486","https://openalex.org/W2032678548","https://openalex.org/W2059237622","https://openalex.org/W2073548709","https://openalex.org/W2074231493","https://openalex.org/W2077339871","https://openalex.org/W2088833470","https://openalex.org/W2091922579","https://openalex.org/W2099111195","https://openalex.org/W2103296919","https://openalex.org/W2107432340","https://openalex.org/W2108718991","https://openalex.org/W2109553965","https://openalex.org/W2115605863","https://openalex.org/W2117228324","https://openalex.org/W2117457769","https://openalex.org/W2122806219","https://openalex.org/W2127115092","https://openalex.org/W2127303481","https://openalex.org/W2132598047","https://openalex.org/W2136993578","https://openalex.org/W2140638310","https://openalex.org/W2147619435","https://openalex.org/W2147637673","https://openalex.org/W2148525391","https://openalex.org/W2150914285","https://openalex.org/W2152885278","https://openalex.org/W2154026962","https://openalex.org/W2156619206","https://openalex.org/W2159255279","https://openalex.org/W2162667876","https://openalex.org/W2225659342","https://openalex.org/W2401404581","https://openalex.org/W2592367925","https://openalex.org/W2951971263","https://openalex.org/W4241328656","https://openalex.org/W4242729757","https://openalex.org/W4302569389","https://openalex.org/W6630786662","https://openalex.org/W6677767205","https://openalex.org/W6684319578"],"related_works":["https://openalex.org/W2091829542","https://openalex.org/W2079744112","https://openalex.org/W2409232331","https://openalex.org/W2138674852","https://openalex.org/W2000174464","https://openalex.org/W1973155124","https://openalex.org/W2119560915","https://openalex.org/W2131487611","https://openalex.org/W2358647075","https://openalex.org/W2051529697"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":21},{"year":2025,"cited_by_count":92},{"year":2024,"cited_by_count":81},{"year":2023,"cited_by_count":98},{"year":2022,"cited_by_count":114},{"year":2021,"cited_by_count":134},{"year":2020,"cited_by_count":87},{"year":2019,"cited_by_count":70},{"year":2018,"cited_by_count":29},{"year":2017,"cited_by_count":2},{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-17T18:11:37.981687","created_date":"2025-10-10T00:00:00"}
