{"id":"https://openalex.org/W2906946803","doi":"https://doi.org/10.1093/bioinformatics/bty1051","title":"DeepPhos: prediction of protein phosphorylation sites with deep learning","display_name":"DeepPhos: prediction of protein phosphorylation sites with deep learning","publication_year":2018,"publication_date":"2018-12-28","ids":{"openalex":"https://openalex.org/W2906946803","doi":"https://doi.org/10.1093/bioinformatics/bty1051","mag":"2906946803","pmid":"https://pubmed.ncbi.nlm.nih.gov/30601936"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty1051","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty1051","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/16/2766/29154588/bty1051.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/35/16/2766/29154588/bty1051.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075661543","display_name":"Fenglin Luo","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Fenglin Luo","raw_affiliation_strings":["School of Information Science and Technology"],"affiliations":[{"raw_affiliation_string":"School of Information Science and Technology","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100376897","display_name":"Minghui Wang","orcid":"https://orcid.org/0000-0002-0181-8467"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Minghui Wang","raw_affiliation_strings":["Centers for Biomedical Engineering, University of Science and Technology of China, Hefei AH, China","School of Information Science and Technology"],"affiliations":[{"raw_affiliation_string":"Centers for Biomedical Engineering, University of Science and Technology of China, Hefei AH, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":"School of Information Science and Technology","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100345976","display_name":"Yu Liu","orcid":"https://orcid.org/0009-0007-6599-5685"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yu Liu","raw_affiliation_strings":["School of Information Science and Technology"],"affiliations":[{"raw_affiliation_string":"School of Information Science and Technology","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101736200","display_name":"Xing-Ming Zhao","orcid":"https://orcid.org/0000-0002-3335-6439"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210164150","display_name":"Shanghai Center for Brain Science and Brain-Inspired Technology","ror":"https://ror.org/0551a0y31","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210164150"]},{"id":"https://openalex.org/I4210085920","display_name":"Shanghai Institute for Science of Science","ror":"https://ror.org/004srxn73","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210085920"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xing-Ming Zhao","raw_affiliation_strings":["Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University, Shanghai, China"],"affiliations":[{"raw_affiliation_string":"Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University, Shanghai, China","institution_ids":["https://openalex.org/I4210164150","https://openalex.org/I4210085920","https://openalex.org/I24943067"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100359729","display_name":"Ao Li","orcid":"https://orcid.org/0000-0001-9910-8967"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ao Li","raw_affiliation_strings":["Centers for Biomedical Engineering, University of Science and Technology of China, Hefei AH, China","School of Information Science and Technology"],"affiliations":[{"raw_affiliation_string":"Centers for Biomedical Engineering, University of Science and Technology of China, Hefei AH, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":"School of Information Science and Technology","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5100376897"],"corresponding_institution_ids":["https://openalex.org/I126520041"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":6.8912,"has_fulltext":false,"cited_by_count":193,"citation_normalized_percentile":{"value":0.97842169,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"35","issue":"16","first_page":"2766","last_page":"2773"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/concatenation","display_name":"Concatenation (mathematics)","score":0.9206534624099731},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7010107636451721},{"id":"https://openalex.org/keywords/discriminative-model","display_name":"Discriminative model","score":0.6632494330406189},{"id":"https://openalex.org/keywords/phosphorylation","display_name":"Phosphorylation","score":0.6441153287887573},{"id":"https://openalex.org/keywords/block","display_name":"Block (permutation group theory)","score":0.5948264002799988},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.5820103883743286},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.5652192831039429},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5297834873199463},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5169191360473633},{"id":"https://openalex.org/keywords/subfamily","display_name":"Subfamily","score":0.4297972023487091},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.34955811500549316},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.34680265188217163},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.341715931892395},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1694624125957489},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10248720645904541},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10054856538772583},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.07350507378578186}],"concepts":[{"id":"https://openalex.org/C87619178","wikidata":"https://www.wikidata.org/wiki/Q126002","display_name":"Concatenation (mathematics)","level":2,"score":0.9206534624099731},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7010107636451721},{"id":"https://openalex.org/C97931131","wikidata":"https://www.wikidata.org/wiki/Q5282087","display_name":"Discriminative model","level":2,"score":0.6632494330406189},{"id":"https://openalex.org/C11960822","wikidata":"https://www.wikidata.org/wiki/Q242736","display_name":"Phosphorylation","level":2,"score":0.6441153287887573},{"id":"https://openalex.org/C2777210771","wikidata":"https://www.wikidata.org/wiki/Q4927124","display_name":"Block (permutation group theory)","level":2,"score":0.5948264002799988},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.5820103883743286},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.5652192831039429},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5297834873199463},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5169191360473633},{"id":"https://openalex.org/C50929876","wikidata":"https://www.wikidata.org/wiki/Q164280","display_name":"Subfamily","level":3,"score":0.4297972023487091},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.34955811500549316},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34680265188217163},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.341715931892395},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1694624125957489},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10248720645904541},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10054856538772583},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.07350507378578186},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bty1051","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty1051","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/16/2766/29154588/bty1051.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30601936","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30601936","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:5645303","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6691328","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty1051","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty1051","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/35/16/2766/29154588/bty1051.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.75,"id":"https://metadata.un.org/sdg/10","display_name":"Reduced inequalities"}],"awards":[{"id":"https://openalex.org/G2576084723","display_name":null,"funder_award_id":"61602347","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3046206575","display_name":null,"funder_award_id":"17ZR1445600","funder_id":"https://openalex.org/F4320309612","funder_display_name":"Natural Science Foundation of Shanghai"},{"id":"https://openalex.org/G4199516844","display_name":null,"funder_award_id":"61571414","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5369175185","display_name":null,"funder_award_id":"61572363","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7078069131","display_name":null,"funder_award_id":"61871361","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7348074014","display_name":null,"funder_award_id":"61471331","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G775243255","display_name":null,"funder_award_id":"61772368","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8179239958","display_name":null,"funder_award_id":"91530321","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320309612","display_name":"Natural Science Foundation of Shanghai","ror":null},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2906946803.pdf","grobid_xml":"https://content.openalex.org/works/W2906946803.grobid-xml"},"referenced_works_count":51,"referenced_works":["https://openalex.org/W1019830208","https://openalex.org/W1564058497","https://openalex.org/W1570204439","https://openalex.org/W1971369226","https://openalex.org/W1984875564","https://openalex.org/W1987122037","https://openalex.org/W1993450321","https://openalex.org/W1995989434","https://openalex.org/W2000299206","https://openalex.org/W2003878905","https://openalex.org/W2027430448","https://openalex.org/W2075319133","https://openalex.org/W2097606916","https://openalex.org/W2103404876","https://openalex.org/W2103495854","https://openalex.org/W2103525038","https://openalex.org/W2104244040","https://openalex.org/W2112796928","https://openalex.org/W2130614771","https://openalex.org/W2151031196","https://openalex.org/W2151984950","https://openalex.org/W2156070536","https://openalex.org/W2157658519","https://openalex.org/W2158899491","https://openalex.org/W2166884712","https://openalex.org/W2187089797","https://openalex.org/W2192273339","https://openalex.org/W2198606573","https://openalex.org/W2417424288","https://openalex.org/W2465012682","https://openalex.org/W2467352723","https://openalex.org/W2543374098","https://openalex.org/W2544368076","https://openalex.org/W2563500611","https://openalex.org/W2569814361","https://openalex.org/W2583310064","https://openalex.org/W2736280136","https://openalex.org/W2737403359","https://openalex.org/W2742750032","https://openalex.org/W2756170093","https://openalex.org/W2758881473","https://openalex.org/W2790179710","https://openalex.org/W2794004073","https://openalex.org/W2805367049","https://openalex.org/W2806449887","https://openalex.org/W2810225085","https://openalex.org/W2894436452","https://openalex.org/W2894836881","https://openalex.org/W2952230511","https://openalex.org/W6683738474","https://openalex.org/W6755276765"],"related_works":["https://openalex.org/W2523831781","https://openalex.org/W2373577936","https://openalex.org/W3017862060","https://openalex.org/W2152598442","https://openalex.org/W1966024327","https://openalex.org/W1585263941","https://openalex.org/W3095575180","https://openalex.org/W2389596151","https://openalex.org/W4221148444","https://openalex.org/W4226054107"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":20},{"year":2024,"cited_by_count":30},{"year":2023,"cited_by_count":30},{"year":2022,"cited_by_count":35},{"year":2021,"cited_by_count":35},{"year":2020,"cited_by_count":29},{"year":2019,"cited_by_count":10}],"updated_date":"2026-04-02T15:55:50.835912","created_date":"2025-10-10T00:00:00"}
