{"id":"https://openalex.org/W2790001298","doi":"https://doi.org/10.1093/bioinformatics/bty032","title":"OPAL: prediction of MoRF regions in intrinsically disordered protein sequences","display_name":"OPAL: prediction of MoRF regions in intrinsically disordered protein sequences","publication_year":2018,"publication_date":"2018-01-17","ids":{"openalex":"https://openalex.org/W2790001298","doi":"https://doi.org/10.1093/bioinformatics/bty032","mag":"2790001298","pmid":"https://pubmed.ncbi.nlm.nih.gov/29360926"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bty032","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty032","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/11/1850/25121624/bty032.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/11/1850/25121624/bty032.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045037589","display_name":"Ronesh Sharma","orcid":"https://orcid.org/0000-0002-7460-6692"},"institutions":[{"id":"https://openalex.org/I44666525","display_name":"University of the South Pacific","ror":"https://ror.org/008stv805","country_code":"FJ","type":"education","lineage":["https://openalex.org/I44666525"]},{"id":"https://openalex.org/I75418795","display_name":"Fiji National University","ror":"https://ror.org/00qk2nf71","country_code":"FJ","type":"education","lineage":["https://openalex.org/I75418795"]}],"countries":["FJ"],"is_corresponding":false,"raw_author_name":"Ronesh Sharma","raw_affiliation_strings":["School of Electrical and Electronics Engineering, Fiji National University, Suva, Fiji","School of Engineering and Physics, The University of the South Pacific, Suva, Fiji"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electrical and Electronics Engineering, Fiji National University, Suva, Fiji","institution_ids":["https://openalex.org/I75418795"]},{"raw_affiliation_string":"School of Engineering and Physics, The University of the South Pacific, Suva, Fiji","institution_ids":["https://openalex.org/I44666525"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082311803","display_name":"Gaurav Raicar","orcid":null},"institutions":[{"id":"https://openalex.org/I44666525","display_name":"University of the South Pacific","ror":"https://ror.org/008stv805","country_code":"FJ","type":"education","lineage":["https://openalex.org/I44666525"]}],"countries":["FJ"],"is_corresponding":false,"raw_author_name":"Gaurav Raicar","raw_affiliation_strings":["School of Engineering and Physics, The University of the South Pacific, Suva, Fiji"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Engineering and Physics, The University of the South Pacific, Suva, Fiji","institution_ids":["https://openalex.org/I44666525"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049989071","display_name":"Tatsuhiko Tsunoda","orcid":"https://orcid.org/0000-0002-5439-7918"},"institutions":[{"id":"https://openalex.org/I125602781","display_name":"Tokyo Medical and Dental University","ror":"https://ror.org/051k3eh31","country_code":"JP","type":"education","lineage":["https://openalex.org/I125602781"]},{"id":"https://openalex.org/I4210086780","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19","country_code":"JP","type":"government","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210086780"]},{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tatsuhiko Tsunoda","raw_affiliation_strings":["CREST, JST, Tokyo, Japan","Department of Medical Science Mathematics, Medical Research Institute, Tokyo Medical and Dental University (TMDU), Tokyo, Japan","Laboratory of Medical Science Mathematics, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CREST, JST, Tokyo, Japan","institution_ids":["https://openalex.org/I4210086780"]},{"raw_affiliation_string":"Department of Medical Science Mathematics, Medical Research Institute, Tokyo Medical and Dental University (TMDU), Tokyo, Japan","institution_ids":["https://openalex.org/I125602781","https://openalex.org/I74801974"]},{"raw_affiliation_string":"Laboratory of Medical Science Mathematics, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan","institution_ids":["https://openalex.org/I4210150921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005993955","display_name":"Ashwini Patil","orcid":"https://orcid.org/0000-0002-3353-1970"},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Ashwini Patil","raw_affiliation_strings":["Human Genome Center, The Institute of Medical Science, The University of Tokyo, Tokyo, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Human Genome Center, The Institute of Medical Science, The University of Tokyo, Tokyo, Japan","institution_ids":["https://openalex.org/I74801974"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025400322","display_name":"Alok Sharma","orcid":"https://orcid.org/0000-0002-7668-3501"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]},{"id":"https://openalex.org/I125602781","display_name":"Tokyo Medical and Dental University","ror":"https://ror.org/051k3eh31","country_code":"JP","type":"education","lineage":["https://openalex.org/I125602781"]},{"id":"https://openalex.org/I4210086780","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19","country_code":"JP","type":"government","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210086780"]},{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]},{"id":"https://openalex.org/I44666525","display_name":"University of the South Pacific","ror":"https://ror.org/008stv805","country_code":"FJ","type":"education","lineage":["https://openalex.org/I44666525"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["AU","FJ","JP"],"is_corresponding":true,"raw_author_name":"Alok Sharma","raw_affiliation_strings":["CREST, JST, Tokyo, Japan","Department of Medical Science Mathematics, Medical Research Institute, Tokyo Medical and Dental University (TMDU), Tokyo, Japan","Institute for Integrated and Intelligent Systems, Griffith University, Nathan, Brisbane, QLD, Australia","Laboratory of Medical Science Mathematics, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan","School of Engineering and Physics, The University of the South Pacific, Suva, Fiji"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CREST, JST, Tokyo, Japan","institution_ids":["https://openalex.org/I4210086780"]},{"raw_affiliation_string":"Department of Medical Science Mathematics, Medical Research Institute, Tokyo Medical and Dental University (TMDU), Tokyo, Japan","institution_ids":["https://openalex.org/I125602781","https://openalex.org/I74801974"]},{"raw_affiliation_string":"Institute for Integrated and Intelligent Systems, Griffith University, Nathan, Brisbane, QLD, Australia","institution_ids":["https://openalex.org/I11701301"]},{"raw_affiliation_string":"Laboratory of Medical Science Mathematics, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan","institution_ids":["https://openalex.org/I4210150921"]},{"raw_affiliation_string":"School of Engineering and Physics, The University of the South Pacific, Suva, Fiji","institution_ids":["https://openalex.org/I44666525"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5005993955","https://openalex.org/A5025400322"],"corresponding_institution_ids":["https://openalex.org/I11701301","https://openalex.org/I125602781","https://openalex.org/I4210086780","https://openalex.org/I4210150921","https://openalex.org/I44666525","https://openalex.org/I74801974"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.2134,"has_fulltext":true,"cited_by_count":80,"citation_normalized_percentile":{"value":0.93182583,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"34","issue":"11","first_page":"1850","last_page":"1858"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.6313999891281128,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.6313999891281128,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.2603999972343445,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.031599998474121094,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6034332513809204},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5940849184989929},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5558593273162842},{"id":"https://openalex.org/keywords/component","display_name":"Component (thermodynamics)","score":0.5202351808547974},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.44927018880844116},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.4435281753540039},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4420751929283142},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4163356423377991},{"id":"https://openalex.org/keywords/intrinsically-disordered-proteins","display_name":"Intrinsically disordered proteins","score":0.4106270372867584},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40312713384628296},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3625164031982422},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.34096378087997437},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19345802068710327},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.19124668836593628},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11891603469848633},{"id":"https://openalex.org/keywords/nuclear-magnetic-resonance","display_name":"Nuclear magnetic resonance","score":0.11809432506561279}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6034332513809204},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5940849184989929},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5558593273162842},{"id":"https://openalex.org/C168167062","wikidata":"https://www.wikidata.org/wiki/Q1117970","display_name":"Component (thermodynamics)","level":2,"score":0.5202351808547974},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.44927018880844116},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.4435281753540039},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4420751929283142},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4163356423377991},{"id":"https://openalex.org/C2778815515","wikidata":"https://www.wikidata.org/wiki/Q3408242","display_name":"Intrinsically disordered proteins","level":2,"score":0.4106270372867584},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40312713384628296},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3625164031982422},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.34096378087997437},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19345802068710327},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.19124668836593628},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11891603469848633},{"id":"https://openalex.org/C46141821","wikidata":"https://www.wikidata.org/wiki/Q209402","display_name":"Nuclear magnetic resonance","level":1,"score":0.11809432506561279},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D064267","descriptor_name":"Intrinsically Disordered Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D064267","descriptor_name":"Intrinsically Disordered Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D064267","descriptor_name":"Intrinsically Disordered Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D064267","descriptor_name":"Intrinsically Disordered Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D064267","descriptor_name":"Intrinsically Disordered Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D064267","descriptor_name":"Intrinsically Disordered Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bty032","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty032","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/11/1850/25121624/bty032.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29360926","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29360926","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:research-repository.griffith.edu.au:10072/379824","is_oa":false,"landing_page_url":"http://hdl.handle.net/10072/379824","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bty032","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bty032","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/11/1850/25121624/bty032.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G8004405434","display_name":"Comprehensive research on statistical methodologies and their applications for development of personalized medicine","funder_award_id":"16H06299","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G8402700078","display_name":null,"funder_award_id":"16cm0106320h0001","funder_id":"https://openalex.org/F4320311405","funder_display_name":"Japan Agency for Medical Research and Development"}],"funders":[{"id":"https://openalex.org/F4320311405","display_name":"Japan Agency for Medical Research and Development","ror":"https://ror.org/004rtk039"},{"id":"https://openalex.org/F4320320907","display_name":"Japan Science and Technology Corporation","ror":"https://ror.org/00097mb19"},{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"},{"id":"https://openalex.org/F4320335125","display_name":"RIKEN","ror":"https://ror.org/01sjwvz98"},{"id":"https://openalex.org/F4320338075","display_name":"Core Research for Evolutional Science and Technology","ror":"https://ror.org/00097mb19"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2790001298.pdf","grobid_xml":"https://content.openalex.org/works/W2790001298.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W1596947964","https://openalex.org/W1994151152","https://openalex.org/W1994840640","https://openalex.org/W2006192061","https://openalex.org/W2011983814","https://openalex.org/W2013354180","https://openalex.org/W2015115860","https://openalex.org/W2027035874","https://openalex.org/W2100908214","https://openalex.org/W2103743266","https://openalex.org/W2110128290","https://openalex.org/W2110371871","https://openalex.org/W2113985551","https://openalex.org/W2114810949","https://openalex.org/W2125463451","https://openalex.org/W2148271643","https://openalex.org/W2156125289","https://openalex.org/W2168220711","https://openalex.org/W2178378573","https://openalex.org/W2191134648","https://openalex.org/W2246311611","https://openalex.org/W2248769182","https://openalex.org/W2288234278","https://openalex.org/W2315787946","https://openalex.org/W2366093519","https://openalex.org/W2533142962","https://openalex.org/W2540069603","https://openalex.org/W2561787309","https://openalex.org/W2566498094","https://openalex.org/W2744720080"],"related_works":["https://openalex.org/W4293203577","https://openalex.org/W4288038979","https://openalex.org/W2964159616","https://openalex.org/W2969721268","https://openalex.org/W2300545781","https://openalex.org/W2069098917","https://openalex.org/W2084314845","https://openalex.org/W2946244273","https://openalex.org/W2383104153","https://openalex.org/W4285228347"],"abstract_inverted_index":{"Motivation:":[0],"Intrinsically":[1],"disordered":[2,32,39,60,129],"proteins":[3],"lack":[4],"stable":[5],"3-dimensional":[6],"structure":[7],"and":[8,79,98,103,123,147,167,180],"play":[9],"a":[10,43,51,91],"crucial":[11],"role":[12],"in":[13,59],"performing":[14],"various":[15],"biological":[16,21],"functions.":[17],"Key":[18],"to":[19,56,106,144,161],"their":[20],"function":[22],"are":[23,77,203],"the":[24,128,135,142,176,182],"molecular":[25],"recognition":[26],"features":[27],"(MoRFs)":[28],"located":[29],"within":[30],"long":[31],"regions.":[33],"Computationally":[34],"identifying":[35],"these":[36],"MoRFs":[37,58,143],"from":[38,134],"protein":[40,61,130],"sequences":[41],"is":[42,88,112,152,181,191],"challenging":[44],"task.":[45],"In":[46],"this":[47],"study,":[48],"we":[49],"present":[50],"new":[52],"MoRF":[53,93,102,146,163,178,188],"predictor,":[54],"OPAL,":[55],"identify":[57],"sequences.":[62],"OPAL":[63,151,173],"utilizes":[64,96],"two":[65],"independent":[66],"sources":[67],"of":[68,101,127,139],"information":[69,126,133],"computed":[70,89],"using":[71,81,90,114,132,154],"different":[72],"component":[73,92],"predictors.":[74],"The":[75,85,109,169],"scores":[76],"processed":[78],"combined":[80],"common":[82],"averaging":[83],"method.":[84],"first":[86],"score":[87,111],"predictor":[94,185],"which":[95],"composition":[97],"sequence":[99],"similarity":[100],"non-MoRF":[104,148],"regions":[105],"detect":[107],"MoRFs.":[108],"second":[110],"calculated":[113],"half-sphere":[115],"exposure":[116],"(HSE),":[117],"solvent":[118],"accessible":[119],"surface":[120],"area":[121],"(ASA)":[122],"backbone":[124],"angle":[125],"sequence,":[131],"amino":[136],"acid":[137],"properties":[138],"flanks":[140],"surrounding":[141],"distinguish":[145],"residues.":[149],"Results:":[150],"evaluated":[153],"test":[155],"sets":[156],"that":[157,172],"were":[158],"previously":[159],"used":[160],"evaluate":[162],"predictors,":[164],"MoRFpred,":[165],"MoRFchibi":[166],"MoRFchibi-web.":[168],"results":[170],"demonstrate":[171],"outperforms":[174],"all":[175],"available":[177,186,192,204],"predictors":[179],"most":[183],"accurate":[184],"for":[187],"prediction.":[189],"It":[190],"at":[193,205],"http://www.alok-ai-lab.com/tools/opal/.":[194],"Contact:":[195],"ashwini@hgc.jp":[196],"or":[197],"alok.sharma@griffith.edu.au.":[198],"Supplementary":[199,201],"information:":[200],"data":[202],"Bioinformatics":[206],"online.":[207]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":18},{"year":2018,"cited_by_count":6}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
