{"id":"https://openalex.org/W2781086737","doi":"https://doi.org/10.1093/bioinformatics/btx823","title":"Protein classification using modified <i>n-grams</i> and <i>skip-grams</i>","display_name":"Protein classification using modified <i>n-grams</i> and <i>skip-grams</i>","publication_year":2017,"publication_date":"2017-12-21","ids":{"openalex":"https://openalex.org/W2781086737","doi":"https://doi.org/10.1093/bioinformatics/btx823","mag":"2781086737","pmid":"https://pubmed.ncbi.nlm.nih.gov/29309523"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btx823","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx823","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/9/1481/25120847/btx823.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/9/1481/25120847/btx823.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045381779","display_name":"S. M. Ashiqul Islam","orcid":"https://orcid.org/0000-0002-5686-6474"},"institutions":[{"id":"https://openalex.org/I157394403","display_name":"Baylor University","ror":"https://ror.org/005781934","country_code":"US","type":"education","lineage":["https://openalex.org/I157394403"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S M Ashiqul Islam","raw_affiliation_strings":["Institute of Biomedical Studies, Baylor University, Waco, TX, USA"],"affiliations":[{"raw_affiliation_string":"Institute of Biomedical Studies, Baylor University, Waco, TX, USA","institution_ids":["https://openalex.org/I157394403"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050115838","display_name":"Benjamin J. Heil","orcid":"https://orcid.org/0000-0002-2811-1031"},"institutions":[{"id":"https://openalex.org/I157394403","display_name":"Baylor University","ror":"https://ror.org/005781934","country_code":"US","type":"education","lineage":["https://openalex.org/I157394403"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Benjamin J Heil","raw_affiliation_strings":["Department of Computer Science, Baylor University, Waco, TX, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Baylor University, Waco, TX, USA","institution_ids":["https://openalex.org/I157394403"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061939858","display_name":"Christopher M. Kearney","orcid":"https://orcid.org/0000-0002-1945-7815"},"institutions":[{"id":"https://openalex.org/I157394403","display_name":"Baylor University","ror":"https://ror.org/005781934","country_code":"US","type":"education","lineage":["https://openalex.org/I157394403"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher Michel Kearney","raw_affiliation_strings":["Department of Biology, Baylor University, Waco, TX, USA","Institute of Biomedical Studies, Baylor University, Waco, TX, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biology, Baylor University, Waco, TX, USA","institution_ids":["https://openalex.org/I157394403"]},{"raw_affiliation_string":"Institute of Biomedical Studies, Baylor University, Waco, TX, USA","institution_ids":["https://openalex.org/I157394403"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052536656","display_name":"Erich J. Baker","orcid":"https://orcid.org/0000-0002-7798-5704"},"institutions":[{"id":"https://openalex.org/I157394403","display_name":"Baylor University","ror":"https://ror.org/005781934","country_code":"US","type":"education","lineage":["https://openalex.org/I157394403"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Erich J Baker","raw_affiliation_strings":["Department of Computer Science, Baylor University, Waco, TX, USA","Institute of Biomedical Studies, Baylor University, Waco, TX, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Baylor University, Waco, TX, USA","institution_ids":["https://openalex.org/I157394403"]},{"raw_affiliation_string":"Institute of Biomedical Studies, Baylor University, Waco, TX, USA","institution_ids":["https://openalex.org/I157394403"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5052536656"],"corresponding_institution_ids":["https://openalex.org/I157394403"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.0633,"has_fulltext":false,"cited_by_count":37,"citation_normalized_percentile":{"value":0.7687578,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"34","issue":"9","first_page":"1481","last_page":"1487"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7765864133834839},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6596216559410095},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5819429159164429},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5474082827568054},{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.5398004055023193},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.5259597301483154},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5029334425926208},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3628537058830261},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.34890443086624146},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.2067166268825531},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.11321523785591125}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7765864133834839},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6596216559410095},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5819429159164429},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5474082827568054},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.5398004055023193},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.5259597301483154},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5029334425926208},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3628537058830261},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.34890443086624146},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.2067166268825531},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.11321523785591125},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btx823","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx823","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/9/1481/25120847/btx823.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29309523","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29309523","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btx823","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx823","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/9/1481/25120847/btx823.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.7699999809265137,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2781086737.pdf","grobid_xml":"https://content.openalex.org/works/W2781086737.grobid-xml"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W104703790","https://openalex.org/W215180336","https://openalex.org/W651589613","https://openalex.org/W1501531009","https://openalex.org/W1533946607","https://openalex.org/W1548406394","https://openalex.org/W1602695191","https://openalex.org/W1854791334","https://openalex.org/W1967843471","https://openalex.org/W1975428268","https://openalex.org/W1984794455","https://openalex.org/W1990881518","https://openalex.org/W1991141438","https://openalex.org/W1998064689","https://openalex.org/W1999080365","https://openalex.org/W2014731953","https://openalex.org/W2022965734","https://openalex.org/W2027875450","https://openalex.org/W2036329916","https://openalex.org/W2044143373","https://openalex.org/W2045993561","https://openalex.org/W2058833671","https://openalex.org/W2059971420","https://openalex.org/W2094931538","https://openalex.org/W2107340752","https://openalex.org/W2117245436","https://openalex.org/W2124626190","https://openalex.org/W2131871423","https://openalex.org/W2132292391","https://openalex.org/W2132402247","https://openalex.org/W2133583551","https://openalex.org/W2135483587","https://openalex.org/W2161746138","https://openalex.org/W2162233306","https://openalex.org/W2163884975","https://openalex.org/W2170960297","https://openalex.org/W2171963266","https://openalex.org/W2254740876","https://openalex.org/W2322844633","https://openalex.org/W2410948454","https://openalex.org/W2439245561","https://openalex.org/W2467787064","https://openalex.org/W2561261875","https://openalex.org/W4213345021","https://openalex.org/W6604213843","https://openalex.org/W6632118081","https://openalex.org/W6662022591","https://openalex.org/W6715287206"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W1533177136","https://openalex.org/W4386564352","https://openalex.org/W2952668426"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":4}],"updated_date":"2025-11-28T02:08:47.144824","created_date":"2018-01-05T00:00:00"}
