{"id":"https://openalex.org/W2774353266","doi":"https://doi.org/10.1093/bioinformatics/btx799","title":"GeoBoost: accelerating research involving the geospatial metadata of virus GenBank records","display_name":"GeoBoost: accelerating research involving the geospatial metadata of virus GenBank records","publication_year":2017,"publication_date":"2017-12-12","ids":{"openalex":"https://openalex.org/W2774353266","doi":"https://doi.org/10.1093/bioinformatics/btx799","mag":"2774353266"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btx799","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx799","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/9/1606/25171267/btx799.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/9/1606/25171267/btx799.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038933482","display_name":"Tasnia Tahsin","orcid":null},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Tasnia Tahsin","raw_affiliation_strings":["Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040948702","display_name":"Davy Weissenbacher","orcid":"https://orcid.org/0000-0001-8331-3675"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Davy Weissenbacher","raw_affiliation_strings":["Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051508180","display_name":"Karen O\u2019Connor","orcid":null},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Karen O\u2019Connor","raw_affiliation_strings":["Institute of Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA"],"affiliations":[{"raw_affiliation_string":"Institute of Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068908108","display_name":"Arjun Magge","orcid":"https://orcid.org/0000-0002-4109-1346"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Arjun Magge","raw_affiliation_strings":["Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050090926","display_name":"Matthew Scotch","orcid":"https://orcid.org/0000-0001-5100-9724"},"institutions":[{"id":"https://openalex.org/I2802821144","display_name":"Center for Environmental Health","ror":"https://ror.org/03k84rm07","country_code":"US","type":"facility","lineage":["https://openalex.org/I2802821144"]},{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matthew Scotch","raw_affiliation_strings":["Biodesign Center for Environmental Health Engineering, Arizona State University, Tempe, AZ, USA","Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ, USA"],"affiliations":[{"raw_affiliation_string":"Biodesign Center for Environmental Health Engineering, Arizona State University, Tempe, AZ, USA","institution_ids":["https://openalex.org/I55732556","https://openalex.org/I2802821144"]},{"raw_affiliation_string":"Department of Biomedical Informatics, Arizona State University, Scottsdale, AZ, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022014033","display_name":"Graciela Gonzalez\u2010Hernandez","orcid":"https://orcid.org/0000-0002-6416-9556"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Graciela Gonzalez-Hernandez","raw_affiliation_strings":["Institute of Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA"],"affiliations":[{"raw_affiliation_string":"Institute of Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I79576946"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5038933482"],"corresponding_institution_ids":["https://openalex.org/I55732556"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.6736,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.70041547,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"34","issue":"9","first_page":"1606","last_page":"1608"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11819","display_name":"Data-Driven Disease Surveillance","score":0.9840999841690063,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10340","display_name":"Hepatitis B Virus Studies","score":0.9794999957084656,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genbank","display_name":"GenBank","score":0.9041253328323364},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.770487904548645},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.7566688060760498},{"id":"https://openalex.org/keywords/geospatial-analysis","display_name":"Geospatial analysis","score":0.7055243253707886},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6176551580429077},{"id":"https://openalex.org/keywords/accession-number","display_name":"Accession number (library science)","score":0.5439249873161316},{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.5151192545890808},{"id":"https://openalex.org/keywords/download","display_name":"Download","score":0.4519505202770233},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.44456595182418823},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4085426926612854},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3568882644176483},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3332917094230652},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.325244665145874},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.3193877339363098},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.19613468647003174},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.08676165342330933},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08086502552032471},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.07115375995635986}],"concepts":[{"id":"https://openalex.org/C79029880","wikidata":"https://www.wikidata.org/wiki/Q901755","display_name":"GenBank","level":3,"score":0.9041253328323364},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.770487904548645},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.7566688060760498},{"id":"https://openalex.org/C9770341","wikidata":"https://www.wikidata.org/wiki/Q1938983","display_name":"Geospatial analysis","level":2,"score":0.7055243253707886},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6176551580429077},{"id":"https://openalex.org/C15190224","wikidata":"https://www.wikidata.org/wiki/Q1417099","display_name":"Accession number (library science)","level":4,"score":0.5439249873161316},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.5151192545890808},{"id":"https://openalex.org/C2780154274","wikidata":"https://www.wikidata.org/wiki/Q7126717","display_name":"Download","level":2,"score":0.4519505202770233},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.44456595182418823},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4085426926612854},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3568882644176483},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3332917094230652},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.325244665145874},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.3193877339363098},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.19613468647003174},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.08676165342330933},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08086502552032471},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.07115375995635986},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btx799","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx799","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/9/1606/25171267/btx799.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5925778","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5925778","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btx799","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx799","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/9/1606/25171267/btx799.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3759246651","display_name":null,"funder_award_id":"AI117011","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5903061775","display_name":null,"funder_award_id":"NIAID","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6441895376","display_name":null,"funder_award_id":"R01 AI117011","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2774353266.pdf","grobid_xml":"https://content.openalex.org/works/W2774353266.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W1961588674","https://openalex.org/W2025675035","https://openalex.org/W2068930226","https://openalex.org/W2090183117","https://openalex.org/W2120545936","https://openalex.org/W2140291614","https://openalex.org/W2156804059","https://openalex.org/W2278764098","https://openalex.org/W2469619590","https://openalex.org/W2565150409","https://openalex.org/W4242729757","https://openalex.org/W6606263545","https://openalex.org/W6640845855","https://openalex.org/W6680915985","https://openalex.org/W7006056840"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2357597986","https://openalex.org/W2353148359","https://openalex.org/W1163571300","https://openalex.org/W2083932745","https://openalex.org/W2186485458","https://openalex.org/W2390300598","https://openalex.org/W4250169950","https://openalex.org/W2062427795","https://openalex.org/W2786076794"],"abstract_inverted_index":{"Abstract":[0],"Summary":[1],"GeoBoost":[2,43,73,90],"is":[3,108,123],"a":[4,32,94],"command-line":[5],"software":[6,122],"package":[7],"developed":[8],"to":[9,21,39,68,110],"address":[10],"sparse":[11],"or":[12],"incomplete":[13],"metadata":[14,61],"in":[15,125],"GenBank":[16,35,41,60],"sequence":[17],"records":[18],"that":[19],"relate":[20],"the":[22,25,51,54,119],"location":[23],"of":[24,29,34,53],"infected":[26],"host":[27],"(LOIH)":[28],"viruses.":[30],"Given":[31],"set":[33],"accession":[36],"numbers":[37],"corresponding":[38],"virus":[40],"records,":[42],"extracts,":[44],"integrates":[45],"and":[46,62,82,85,98,114,117,128,133],"normalizes":[47],"geographic":[48],"information":[49,58,137],"reflecting":[50],"LOIH":[52],"viruses":[55],"using":[56],"integrated":[57],"from":[59],"related":[63],"full-text":[64],"publications.":[65],"In":[66],"addition,":[67],"facilitate":[69],"probabilistic":[70],"geospatial":[71],"modeling,":[72],"assigns":[74],"probability":[75],"scores":[76],"for":[77,88,101],"each":[78],"possible":[79],"LOIH.":[80],"Availability":[81],"implementation":[83],"Binaries":[84],"resources":[86],"required":[87],"running":[89],"are":[91,140],"packed":[92],"into":[93],"single":[95],"zipped":[96],"file":[97],"freely":[99],"available":[100,141],"download":[102],"at":[103,142],"https://tinyurl.com/geoboost.":[104],"A":[105],"video":[106],"tutorial":[107],"included":[109],"help":[111],"users":[112],"quickly":[113],"easily":[115],"install":[116],"run":[118],"software.":[120],"The":[121],"implemented":[124],"Java":[126],"1.8,":[127],"supported":[129],"on":[130],"MS":[131],"Windows":[132],"Linux":[134],"platforms.":[135],"Supplementary":[136,138],"data":[139],"Bioinformatics":[143],"online.":[144]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2018,"cited_by_count":3}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2017-12-22T00:00:00"}
