{"id":"https://openalex.org/W2774551105","doi":"https://doi.org/10.1093/bioinformatics/btx791","title":"FROGS: Find, Rapidly, OTUs with Galaxy Solution","display_name":"FROGS: Find, Rapidly, OTUs with Galaxy Solution","publication_year":2017,"publication_date":"2017-12-05","ids":{"openalex":"https://openalex.org/W2774551105","doi":"https://doi.org/10.1093/bioinformatics/btx791","mag":"2774551105","pmid":"https://pubmed.ncbi.nlm.nih.gov/29228191"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btx791","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx791","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/8/1287/25120139/btx791.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/8/1287/25120139/btx791.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033817969","display_name":"Fr\u00e9deric Escudi\u00e9","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Fr\u00e9d\u00e9ric Escudi\u00e9","raw_affiliation_strings":["Bioinformatics platform Toulouse Midi-Pyrenees, MIAT, INRA Auzeville CS, Castanet Tolosan cedex, France"],"affiliations":[{"raw_affiliation_string":"Bioinformatics platform Toulouse Midi-Pyrenees, MIAT, INRA Auzeville CS, Castanet Tolosan cedex, France","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017007109","display_name":"Lucas Auer","orcid":null},"institutions":[{"id":"https://openalex.org/I4210133191","display_name":"Interactions Arbres-Microorganismes","ror":"https://ror.org/03c4rpa03","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210102465","https://openalex.org/I4210133191","https://openalex.org/I90183372"]},{"id":"https://openalex.org/I90183372","display_name":"Universit\u00e9 de Lorraine","ror":"https://ror.org/04vfs2w97","country_code":"FR","type":"education","lineage":["https://openalex.org/I90183372"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Lucas Auer","raw_affiliation_strings":["INRA, UMR 1136, Universit\u00e9 de Lorraine, INRA-Nancy, Champenoux, France","Interactions Arbres-Microorganismes"],"affiliations":[{"raw_affiliation_string":"INRA, UMR 1136, Universit\u00e9 de Lorraine, INRA-Nancy, Champenoux, France","institution_ids":["https://openalex.org/I90183372"]},{"raw_affiliation_string":"Interactions Arbres-Microorganismes","institution_ids":["https://openalex.org/I4210133191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104058821","display_name":"Maria Bernard","orcid":"https://orcid.org/0000-0001-9005-5563"},"institutions":[{"id":"https://openalex.org/I22248866","display_name":"AgroParisTech","ror":"https://ror.org/02kbmgc12","country_code":"FR","type":"education","lineage":["https://openalex.org/I22248866","https://openalex.org/I277688954"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Maria Bernard","raw_affiliation_strings":["GABI, INRA, AgroParisTech, Universit\u00e9 Paris-Saclay, Jouy-en-Josas, France"],"affiliations":[{"raw_affiliation_string":"GABI, INRA, AgroParisTech, Universit\u00e9 Paris-Saclay, Jouy-en-Josas, France","institution_ids":["https://openalex.org/I22248866","https://openalex.org/I277688954"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055648418","display_name":"Mahendra Mariadassou","orcid":"https://orcid.org/0000-0003-2986-354X"},"institutions":[{"id":"https://openalex.org/I4210159481","display_name":"Math\u00e9matiques et Informatique Appliqu\u00e9es du G\u00e9nome \u00e0 l'Environnement","ror":"https://ror.org/05qdnns64","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210099460","https://openalex.org/I4210159481"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Mahendra Mariadassou","raw_affiliation_strings":["MaIAGE, INRA, Universit\u00e9 Paris-Saclay, Jouy-en-Josas, France"],"affiliations":[{"raw_affiliation_string":"MaIAGE, INRA, Universit\u00e9 Paris-Saclay, Jouy-en-Josas, France","institution_ids":["https://openalex.org/I4210159481","https://openalex.org/I277688954"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031750574","display_name":"Laurent Cauquil","orcid":"https://orcid.org/0000-0002-0384-8811"},"institutions":[{"id":"https://openalex.org/I176063091","display_name":"\u00c9cole Nationale V\u00e9t\u00e9rinaire de Toulouse","ror":"https://ror.org/03m3gzv89","country_code":"FR","type":"education","lineage":["https://openalex.org/I176063091","https://openalex.org/I4210117091","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I17866349","display_name":"Universit\u00e9 F\u00e9d\u00e9rale de Toulouse Midi-Pyr\u00e9n\u00e9es","ror":"https://ror.org/004raaa70","country_code":"FR","type":"education","lineage":["https://openalex.org/I17866349"]},{"id":"https://openalex.org/I205747304","display_name":"Institut National Polytechnique de Toulouse","ror":"https://ror.org/033p9g875","country_code":"FR","type":"education","lineage":["https://openalex.org/I205747304","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I4210154939","display_name":"G\u00e9n\u00e9tique Physiologie et Syst\u00e8mes d'Elevage","ror":"https://ror.org/04gg6ne93","country_code":"FR","type":"facility","lineage":["https://openalex.org/I176063091","https://openalex.org/I205747304","https://openalex.org/I205747304","https://openalex.org/I4210088668","https://openalex.org/I4210088668","https://openalex.org/I4210088668","https://openalex.org/I4210116501","https://openalex.org/I4210117091","https://openalex.org/I4210121065","https://openalex.org/I4210131653","https://openalex.org/I4210132088","https://openalex.org/I4210154939","https://openalex.org/I4405258862","https://openalex.org/I4405258862","https://openalex.org/I4405258862"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Laurent Cauquil","raw_affiliation_strings":["GenPhySE, Universit\u00e9 de Toulouse, INRA, INPT, ENVT, Castanet Tolosan, France"],"affiliations":[{"raw_affiliation_string":"GenPhySE, Universit\u00e9 de Toulouse, INRA, INPT, ENVT, Castanet Tolosan, France","institution_ids":["https://openalex.org/I4210154939","https://openalex.org/I17866349","https://openalex.org/I205747304","https://openalex.org/I176063091"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064351671","display_name":"Katia Vidal","orcid":null},"institutions":[{"id":"https://openalex.org/I176063091","display_name":"\u00c9cole Nationale V\u00e9t\u00e9rinaire de Toulouse","ror":"https://ror.org/03m3gzv89","country_code":"FR","type":"education","lineage":["https://openalex.org/I176063091","https://openalex.org/I4210117091","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I205747304","display_name":"Institut National Polytechnique de Toulouse","ror":"https://ror.org/033p9g875","country_code":"FR","type":"education","lineage":["https://openalex.org/I205747304","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I4210154939","display_name":"G\u00e9n\u00e9tique Physiologie et Syst\u00e8mes d'Elevage","ror":"https://ror.org/04gg6ne93","country_code":"FR","type":"facility","lineage":["https://openalex.org/I176063091","https://openalex.org/I205747304","https://openalex.org/I205747304","https://openalex.org/I4210088668","https://openalex.org/I4210088668","https://openalex.org/I4210088668","https://openalex.org/I4210116501","https://openalex.org/I4210117091","https://openalex.org/I4210121065","https://openalex.org/I4210131653","https://openalex.org/I4210132088","https://openalex.org/I4210154939","https://openalex.org/I4405258862","https://openalex.org/I4405258862","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I17866349","display_name":"Universit\u00e9 F\u00e9d\u00e9rale de Toulouse Midi-Pyr\u00e9n\u00e9es","ror":"https://ror.org/004raaa70","country_code":"FR","type":"education","lineage":["https://openalex.org/I17866349"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Katia Vidal","raw_affiliation_strings":["GenPhySE, Universit\u00e9 de Toulouse, INRA, INPT, ENVT, Castanet Tolosan, France"],"affiliations":[{"raw_affiliation_string":"GenPhySE, Universit\u00e9 de Toulouse, INRA, INPT, ENVT, Castanet Tolosan, France","institution_ids":["https://openalex.org/I4210154939","https://openalex.org/I17866349","https://openalex.org/I205747304","https://openalex.org/I176063091"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019747897","display_name":"Sarah Maman","orcid":"https://orcid.org/0000-0001-6453-902X"},"institutions":[{"id":"https://openalex.org/I4210154939","display_name":"G\u00e9n\u00e9tique Physiologie et Syst\u00e8mes d'Elevage","ror":"https://ror.org/04gg6ne93","country_code":"FR","type":"facility","lineage":["https://openalex.org/I176063091","https://openalex.org/I205747304","https://openalex.org/I205747304","https://openalex.org/I4210088668","https://openalex.org/I4210088668","https://openalex.org/I4210088668","https://openalex.org/I4210116501","https://openalex.org/I4210117091","https://openalex.org/I4210121065","https://openalex.org/I4210131653","https://openalex.org/I4210132088","https://openalex.org/I4210154939","https://openalex.org/I4405258862","https://openalex.org/I4405258862","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I176063091","display_name":"\u00c9cole Nationale V\u00e9t\u00e9rinaire de Toulouse","ror":"https://ror.org/03m3gzv89","country_code":"FR","type":"education","lineage":["https://openalex.org/I176063091","https://openalex.org/I4210117091","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I205747304","display_name":"Institut National Polytechnique de Toulouse","ror":"https://ror.org/033p9g875","country_code":"FR","type":"education","lineage":["https://openalex.org/I205747304","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I17866349","display_name":"Universit\u00e9 F\u00e9d\u00e9rale de Toulouse Midi-Pyr\u00e9n\u00e9es","ror":"https://ror.org/004raaa70","country_code":"FR","type":"education","lineage":["https://openalex.org/I17866349"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Sarah Maman","raw_affiliation_strings":["GenPhySE, Universit\u00e9 de Toulouse, INRA, INPT, ENVT, Castanet Tolosan, France"],"affiliations":[{"raw_affiliation_string":"GenPhySE, Universit\u00e9 de Toulouse, INRA, INPT, ENVT, Castanet Tolosan, France","institution_ids":["https://openalex.org/I4210154939","https://openalex.org/I17866349","https://openalex.org/I205747304","https://openalex.org/I176063091"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077281981","display_name":"Guillermina Hernandez\u2010Raquet","orcid":"https://orcid.org/0000-0003-4465-4607"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I17866349","display_name":"Universit\u00e9 F\u00e9d\u00e9rale de Toulouse Midi-Pyr\u00e9n\u00e9es","ror":"https://ror.org/004raaa70","country_code":"FR","type":"education","lineage":["https://openalex.org/I17866349"]},{"id":"https://openalex.org/I4210110888","display_name":"Laboratoire d'Ing\u00e9nierie des Syst\u00e8mes Biologiques et des Proc\u00e9d\u00e9s","ror":"https://ror.org/01yypjb30","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I196454796","https://openalex.org/I4210088668","https://openalex.org/I4210095849","https://openalex.org/I4210110888","https://openalex.org/I4405258862"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Guillermina Hernandez-Raquet","raw_affiliation_strings":["Laboratoire d'ing\u00e9nierie des Syst\u00e8mes Biologiques et des Proc\u00e9d\u00e9s-LISBP, Universit\u00e9 de Toulouse, INSA, INRA, CNRS, Toulouse, France"],"affiliations":[{"raw_affiliation_string":"Laboratoire d'ing\u00e9nierie des Syst\u00e8mes Biologiques et des Proc\u00e9d\u00e9s-LISBP, Universit\u00e9 de Toulouse, INSA, INRA, CNRS, Toulouse, France","institution_ids":["https://openalex.org/I4210110888","https://openalex.org/I17866349","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004311311","display_name":"Sylvie Combes","orcid":"https://orcid.org/0000-0002-2945-4423"},"institutions":[{"id":"https://openalex.org/I176063091","display_name":"\u00c9cole Nationale V\u00e9t\u00e9rinaire de Toulouse","ror":"https://ror.org/03m3gzv89","country_code":"FR","type":"education","lineage":["https://openalex.org/I176063091","https://openalex.org/I4210117091","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I4210154939","display_name":"G\u00e9n\u00e9tique Physiologie et Syst\u00e8mes d'Elevage","ror":"https://ror.org/04gg6ne93","country_code":"FR","type":"facility","lineage":["https://openalex.org/I176063091","https://openalex.org/I205747304","https://openalex.org/I205747304","https://openalex.org/I4210088668","https://openalex.org/I4210088668","https://openalex.org/I4210088668","https://openalex.org/I4210116501","https://openalex.org/I4210117091","https://openalex.org/I4210121065","https://openalex.org/I4210131653","https://openalex.org/I4210132088","https://openalex.org/I4210154939","https://openalex.org/I4405258862","https://openalex.org/I4405258862","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I17866349","display_name":"Universit\u00e9 F\u00e9d\u00e9rale de Toulouse Midi-Pyr\u00e9n\u00e9es","ror":"https://ror.org/004raaa70","country_code":"FR","type":"education","lineage":["https://openalex.org/I17866349"]},{"id":"https://openalex.org/I205747304","display_name":"Institut National Polytechnique de Toulouse","ror":"https://ror.org/033p9g875","country_code":"FR","type":"education","lineage":["https://openalex.org/I205747304","https://openalex.org/I4405258862"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Sylvie Combes","raw_affiliation_strings":["GenPhySE, Universit\u00e9 de Toulouse, INRA, INPT, ENVT, Castanet Tolosan, France"],"affiliations":[{"raw_affiliation_string":"GenPhySE, Universit\u00e9 de Toulouse, INRA, INPT, ENVT, Castanet Tolosan, France","institution_ids":["https://openalex.org/I4210154939","https://openalex.org/I17866349","https://openalex.org/I205747304","https://openalex.org/I176063091"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083621153","display_name":"G\u00e9raldine Pascal","orcid":"https://orcid.org/0000-0002-5250-6594"},"institutions":[{"id":"https://openalex.org/I205747304","display_name":"Institut National Polytechnique de Toulouse","ror":"https://ror.org/033p9g875","country_code":"FR","type":"education","lineage":["https://openalex.org/I205747304","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I176063091","display_name":"\u00c9cole Nationale V\u00e9t\u00e9rinaire de Toulouse","ror":"https://ror.org/03m3gzv89","country_code":"FR","type":"education","lineage":["https://openalex.org/I176063091","https://openalex.org/I4210117091","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I17866349","display_name":"Universit\u00e9 F\u00e9d\u00e9rale de Toulouse Midi-Pyr\u00e9n\u00e9es","ror":"https://ror.org/004raaa70","country_code":"FR","type":"education","lineage":["https://openalex.org/I17866349"]},{"id":"https://openalex.org/I4210154939","display_name":"G\u00e9n\u00e9tique Physiologie et Syst\u00e8mes d'Elevage","ror":"https://ror.org/04gg6ne93","country_code":"FR","type":"facility","lineage":["https://openalex.org/I176063091","https://openalex.org/I205747304","https://openalex.org/I205747304","https://openalex.org/I4210088668","https://openalex.org/I4210088668","https://openalex.org/I4210088668","https://openalex.org/I4210116501","https://openalex.org/I4210117091","https://openalex.org/I4210121065","https://openalex.org/I4210131653","https://openalex.org/I4210132088","https://openalex.org/I4210154939","https://openalex.org/I4405258862","https://openalex.org/I4405258862","https://openalex.org/I4405258862"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"G\u00e9raldine Pascal","raw_affiliation_strings":["GenPhySE, Universit\u00e9 de Toulouse, INRA, INPT, ENVT, Castanet Tolosan, France"],"affiliations":[{"raw_affiliation_string":"GenPhySE, Universit\u00e9 de Toulouse, INRA, INPT, ENVT, Castanet Tolosan, France","institution_ids":["https://openalex.org/I4210154939","https://openalex.org/I17866349","https://openalex.org/I205747304","https://openalex.org/I176063091"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5083621153"],"corresponding_institution_ids":["https://openalex.org/I176063091","https://openalex.org/I17866349","https://openalex.org/I205747304","https://openalex.org/I4210154939"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":24.0273,"has_fulltext":true,"cited_by_count":981,"citation_normalized_percentile":{"value":0.99751037,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"34","issue":"8","first_page":"1287","last_page":"1294"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12640","display_name":"Environmental DNA in Biodiversity Studies","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6401886940002441},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5816872119903564},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5407794117927551},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5242034196853638},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.4550316333770752},{"id":"https://openalex.org/keywords/sample","display_name":"Sample (material)","score":0.41112565994262695},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.395255446434021},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.38364559412002563},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3799830675125122},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.3224407732486725},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.23512810468673706},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10524159669876099}],"concepts":[{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6401886940002441},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5816872119903564},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5407794117927551},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5242034196853638},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.4550316333770752},{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.41112565994262695},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.395255446434021},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.38364559412002563},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3799830675125122},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.3224407732486725},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.23512810468673706},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10524159669876099},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btx791","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx791","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/8/1287/25120139/btx791.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29228191","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29228191","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:HAL:hal-02626808v1","is_oa":false,"landing_page_url":"https://hal.inrae.fr/hal-02626808","pdf_url":null,"source":{"id":"https://openalex.org/S4406922466","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2018, 34 (8), pp.1287-1294. ⟨10.1093/bioinformatics/btx791⟩","raw_type":"Journal articles"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btx791","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx791","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/8/1287/25120139/btx791.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1916321118","display_name":null,"funder_award_id":"ANR-10-INBS-0","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G3984362188","display_name":null,"funder_award_id":"ANR-10-INBS-09","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G6249243262","display_name":null,"funder_award_id":"31000553","funder_id":"https://openalex.org/F4320323910","funder_display_name":"Institut National de la Recherche Agronomique"},{"id":"https://openalex.org/G7240651115","display_name":null,"funder_award_id":"ANR-10","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G7999552054","display_name":null,"funder_award_id":"10-INBS-09","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320323910","display_name":"Institut National de la Recherche Agronomique","ror":"https://ror.org/01x3gbx83"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2774551105.pdf","grobid_xml":"https://content.openalex.org/works/W2774551105.grobid-xml"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W1583240815","https://openalex.org/W1881066983","https://openalex.org/W1969346416","https://openalex.org/W1986908904","https://openalex.org/W1988925586","https://openalex.org/W2034285706","https://openalex.org/W2036897871","https://openalex.org/W2056279562","https://openalex.org/W2062953745","https://openalex.org/W2068234766","https://openalex.org/W2072970694","https://openalex.org/W2079520182","https://openalex.org/W2086021468","https://openalex.org/W2086865963","https://openalex.org/W2087544933","https://openalex.org/W2088833470","https://openalex.org/W2094492452","https://openalex.org/W2098035523","https://openalex.org/W2101120467","https://openalex.org/W2108718991","https://openalex.org/W2117457769","https://openalex.org/W2121055398","https://openalex.org/W2124351063","https://openalex.org/W2127036970","https://openalex.org/W2136482257","https://openalex.org/W2136879569","https://openalex.org/W2140638310","https://openalex.org/W2141557839","https://openalex.org/W2142678478","https://openalex.org/W2142735254","https://openalex.org/W2142802314","https://openalex.org/W2146580089","https://openalex.org/W2150914285","https://openalex.org/W2152885278","https://openalex.org/W2157107905","https://openalex.org/W2160209604","https://openalex.org/W2160932169","https://openalex.org/W2161645441","https://openalex.org/W2163236435","https://openalex.org/W2170747616","https://openalex.org/W2273522830","https://openalex.org/W2287269066","https://openalex.org/W2295536829","https://openalex.org/W2335079469","https://openalex.org/W2340423564","https://openalex.org/W2340748026","https://openalex.org/W2513506562","https://openalex.org/W2564755845"],"related_works":["https://openalex.org/W638577851","https://openalex.org/W2968354375","https://openalex.org/W2359440920","https://openalex.org/W2889550857","https://openalex.org/W3013372948","https://openalex.org/W3135997498","https://openalex.org/W4242417330","https://openalex.org/W3198631238","https://openalex.org/W4388282505","https://openalex.org/W4255657129"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":25},{"year":2025,"cited_by_count":108},{"year":2024,"cited_by_count":223},{"year":2023,"cited_by_count":157},{"year":2022,"cited_by_count":124},{"year":2021,"cited_by_count":130},{"year":2020,"cited_by_count":118},{"year":2019,"cited_by_count":60},{"year":2018,"cited_by_count":35},{"year":2017,"cited_by_count":1}],"updated_date":"2026-04-18T07:56:08.524223","created_date":"2025-10-10T00:00:00"}