{"id":"https://openalex.org/W2772099288","doi":"https://doi.org/10.1093/bioinformatics/btx789","title":"NGLview\u2013interactive molecular graphics for Jupyter notebooks","display_name":"NGLview\u2013interactive molecular graphics for Jupyter notebooks","publication_year":2017,"publication_date":"2017-12-09","ids":{"openalex":"https://openalex.org/W2772099288","doi":"https://doi.org/10.1093/bioinformatics/btx789","mag":"2772099288","pmid":"https://pubmed.ncbi.nlm.nih.gov/29236954"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btx789","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx789","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/7/1241/25119547/btx789.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/7/1241/25119547/btx789.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112029287","display_name":"Hai Nguyen","orcid":null},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hai Nguyen","raw_affiliation_strings":["Department of Chemistry and Chemical Biology, Rutgers University, New Brunswick, NJ, USA"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Chemical Biology, Rutgers University, New Brunswick, NJ, USA","institution_ids":["https://openalex.org/I102322142"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014694160","display_name":"David A. Case","orcid":"https://orcid.org/0000-0003-2314-2346"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David A Case","raw_affiliation_strings":["Department of Chemistry and Chemical Biology, Rutgers University, New Brunswick, NJ, USA"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Chemical Biology, Rutgers University, New Brunswick, NJ, USA","institution_ids":["https://openalex.org/I102322142"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033139813","display_name":"Alexander Rose","orcid":"https://orcid.org/0000-0002-0893-5551"},"institutions":[{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Alexander S Rose","raw_affiliation_strings":["RCSB Protein Data Bank, San Diego Supercomputer Center, University of California, La Jolla, San Diego, CA, USA"],"affiliations":[{"raw_affiliation_string":"RCSB Protein Data Bank, San Diego Supercomputer Center, University of California, La Jolla, San Diego, CA, USA","institution_ids":["https://openalex.org/I181653535"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5033139813"],"corresponding_institution_ids":["https://openalex.org/I181653535"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":4.3783,"has_fulltext":false,"cited_by_count":183,"citation_normalized_percentile":{"value":0.95450728,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"34","issue":"7","first_page":"1241","last_page":"1242"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9800999760627747,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8430783748626709},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.8299856185913086},{"id":"https://openalex.org/keywords/javascript","display_name":"JavaScript","score":0.7965540885925293},{"id":"https://openalex.org/keywords/graphics","display_name":"Graphics","score":0.6462302207946777},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5382720232009888},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.5236979722976685},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.5141099095344543},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.5120247006416321},{"id":"https://openalex.org/keywords/license","display_name":"License","score":0.5071227550506592},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4954904317855835},{"id":"https://openalex.org/keywords/molecular-graphics","display_name":"Molecular graphics","score":0.48030155897140503},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics","score":0.4012363851070404},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.33986419439315796},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.32126325368881226}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8430783748626709},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.8299856185913086},{"id":"https://openalex.org/C544833334","wikidata":"https://www.wikidata.org/wiki/Q2005","display_name":"JavaScript","level":2,"score":0.7965540885925293},{"id":"https://openalex.org/C21442007","wikidata":"https://www.wikidata.org/wiki/Q1027879","display_name":"Graphics","level":2,"score":0.6462302207946777},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5382720232009888},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.5236979722976685},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.5141099095344543},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.5120247006416321},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.5071227550506592},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4954904317855835},{"id":"https://openalex.org/C126766683","wikidata":"https://www.wikidata.org/wiki/Q6896006","display_name":"Molecular graphics","level":3,"score":0.48030155897140503},{"id":"https://openalex.org/C77660652","wikidata":"https://www.wikidata.org/wiki/Q150971","display_name":"Computer graphics","level":2,"score":0.4012363851070404},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.33986419439315796},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.32126325368881226}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btx789","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx789","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/7/1241/25119547/btx789.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29236954","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29236954","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:alma.01RUT_INST:11675682280004646","is_oa":false,"landing_page_url":"https://scholarship.libraries.rutgers.edu/esploro/outputs/journalArticle/NGLview-interactive-molecular-graphics-for-Jupyter-notebooks/991031716806004646","pdf_url":null,"source":{"id":"https://openalex.org/S4210197018","display_name":"View","issn_l":"2688-268X","issn":["2688-268X","2688-3988"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:europepmc.org:5423201","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6031024","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btx789","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx789","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/7/1241/25119547/btx789.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1485312667","display_name":null,"funder_award_id":"GM103297","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4366506150","display_name":null,"funder_award_id":"NSF DBI-1338415","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2772099288.pdf","grobid_xml":"https://content.openalex.org/works/W2772099288.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W2029667189","https://openalex.org/W2069152576","https://openalex.org/W2114850508","https://openalex.org/W2116389515","https://openalex.org/W2132629607","https://openalex.org/W2140047797","https://openalex.org/W2147988069","https://openalex.org/W2151581834","https://openalex.org/W2170711116","https://openalex.org/W2296686360","https://openalex.org/W2488156821","https://openalex.org/W2601081289","https://openalex.org/W2619713135","https://openalex.org/W2641905542"],"related_works":["https://openalex.org/W2038255918","https://openalex.org/W4309247532","https://openalex.org/W2037810710","https://openalex.org/W1974904668","https://openalex.org/W3143592475","https://openalex.org/W3096946169","https://openalex.org/W200616046","https://openalex.org/W2051676847","https://openalex.org/W2113128227","https://openalex.org/W2144610372"],"abstract_inverted_index":{"asr.moin@gmail.com.":[0]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":31},{"year":2024,"cited_by_count":23},{"year":2023,"cited_by_count":27},{"year":2022,"cited_by_count":28},{"year":2021,"cited_by_count":31},{"year":2020,"cited_by_count":20},{"year":2019,"cited_by_count":10},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":1}],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2025-10-10T00:00:00"}
