{"id":"https://openalex.org/W2774388828","doi":"https://doi.org/10.1093/bioinformatics/btx775","title":"ASAR: visual analysis of metagenomes in R","display_name":"ASAR: visual analysis of metagenomes in R","publication_year":2017,"publication_date":"2017-12-01","ids":{"openalex":"https://openalex.org/W2774388828","doi":"https://doi.org/10.1093/bioinformatics/btx775","mag":"2774388828","pmid":"https://pubmed.ncbi.nlm.nih.gov/29211828"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btx775","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx775","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/8/1404/48915420/bioinformatics_34_8_1404.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/8/1404/48915420/bioinformatics_34_8_1404.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018643221","display_name":"Askarbek Orakov","orcid":"https://orcid.org/0000-0001-6823-5269"},"institutions":[{"id":"https://openalex.org/I142637625","display_name":"Okinawa Institute of Science and Technology Graduate University","ror":"https://ror.org/02qg15b79","country_code":"JP","type":"education","lineage":["https://openalex.org/I142637625"]},{"id":"https://openalex.org/I60559429","display_name":"Nazarbayev University","ror":"https://ror.org/052bx8q98","country_code":"KZ","type":"education","lineage":["https://openalex.org/I60559429"]}],"countries":["JP","KZ"],"is_corresponding":true,"raw_author_name":"Askarbek N Orakov","raw_affiliation_strings":["Biological Systems Unit, Okinawa Institute of Science and Technology, Onna-son, Japan","Department of Biology, School of Science and Technology, Nazarbayev University, Astana, Kazakhstan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biological Systems Unit, Okinawa Institute of Science and Technology, Onna-son, Japan","institution_ids":["https://openalex.org/I142637625"]},{"raw_affiliation_string":"Department of Biology, School of Science and Technology, Nazarbayev University, Astana, Kazakhstan","institution_ids":["https://openalex.org/I60559429"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080946067","display_name":"Nazgul Sakenova","orcid":"https://orcid.org/0000-0003-0310-1096"},"institutions":[{"id":"https://openalex.org/I142637625","display_name":"Okinawa Institute of Science and Technology Graduate University","ror":"https://ror.org/02qg15b79","country_code":"JP","type":"education","lineage":["https://openalex.org/I142637625"]},{"id":"https://openalex.org/I60559429","display_name":"Nazarbayev University","ror":"https://ror.org/052bx8q98","country_code":"KZ","type":"education","lineage":["https://openalex.org/I60559429"]}],"countries":["JP","KZ"],"is_corresponding":false,"raw_author_name":"Nazgul K Sakenova","raw_affiliation_strings":["Biological Systems Unit, Okinawa Institute of Science and Technology, Onna-son, Japan","Department of Biology, School of Science and Technology, Nazarbayev University, Astana, Kazakhstan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biological Systems Unit, Okinawa Institute of Science and Technology, Onna-son, Japan","institution_ids":["https://openalex.org/I142637625"]},{"raw_affiliation_string":"Department of Biology, School of Science and Technology, Nazarbayev University, Astana, Kazakhstan","institution_ids":["https://openalex.org/I60559429"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020746275","display_name":"Anatoly Sorokin","orcid":"https://orcid.org/0000-0002-0047-0606"},"institutions":[{"id":"https://openalex.org/I153845743","display_name":"Moscow Institute of Physics and Technology","ror":"https://ror.org/00v0z9322","country_code":"RU","type":"education","lineage":["https://openalex.org/I153845743"]},{"id":"https://openalex.org/I4210155801","display_name":"Institute of Cell Biophysics","ror":"https://ror.org/05gbnpz65","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210129690","https://openalex.org/I4210155801"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Anatoly Sorokin","raw_affiliation_strings":["Laboratory of Ion and Molecular Physics, Moscow Institute of Physics and Technology, Dolgoprundy, Moscow, Russia","Mechanism of Cell Genome Functioning Laboratory, Institute of Cell Biophysics RAS, Pushchino, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Ion and Molecular Physics, Moscow Institute of Physics and Technology, Dolgoprundy, Moscow, Russia","institution_ids":["https://openalex.org/I153845743"]},{"raw_affiliation_string":"Mechanism of Cell Genome Functioning Laboratory, Institute of Cell Biophysics RAS, Pushchino, Russia","institution_ids":["https://openalex.org/I4210155801"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082079518","display_name":"Igor Goryanin","orcid":"https://orcid.org/0000-0002-8293-774X"},"institutions":[{"id":"https://openalex.org/I142637625","display_name":"Okinawa Institute of Science and Technology Graduate University","ror":"https://ror.org/02qg15b79","country_code":"JP","type":"education","lineage":["https://openalex.org/I142637625"]},{"id":"https://openalex.org/I4210139473","display_name":"Tianjin Institute of Industrial Biotechnology","ror":"https://ror.org/042pyga86","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210139473"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["CN","GB","JP"],"is_corresponding":true,"raw_author_name":"Igor I Goryanin","raw_affiliation_strings":["Biodesign Centre, Tianjin Institute of Industrial Biotechnology, Tianjin, China","Biological Systems Unit, Okinawa Institute of Science and Technology, Onna-son, Japan","School of Informatics, University of Edinburgh, Edinburgh, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biodesign Centre, Tianjin Institute of Industrial Biotechnology, Tianjin, China","institution_ids":["https://openalex.org/I4210139473"]},{"raw_affiliation_string":"Biological Systems Unit, Okinawa Institute of Science and Technology, Onna-son, Japan","institution_ids":["https://openalex.org/I142637625"]},{"raw_affiliation_string":"School of Informatics, University of Edinburgh, Edinburgh, UK","institution_ids":["https://openalex.org/I98677209"]}]}],"institutions":[],"countries_distinct_count":5,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5018643221","https://openalex.org/A5082079518"],"corresponding_institution_ids":["https://openalex.org/I142637625","https://openalex.org/I4210139473","https://openalex.org/I60559429","https://openalex.org/I98677209"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":{"value":3989,"currency":"USD","value_usd":3989},"fwci":1.5262,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.83021457,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"34","issue":"8","first_page":"1404","last_page":"1405"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.5515999794006348,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.5515999794006348,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.18529999256134033,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.04399999976158142,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.8130359649658203},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6477235555648804},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6417909860610962},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5829696655273438},{"id":"https://openalex.org/keywords/hierarchy","display_name":"Hierarchy","score":0.4936846196651459},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4706536829471588},{"id":"https://openalex.org/keywords/kegg","display_name":"KEGG","score":0.45490512251853943},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.441425621509552},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.41406798362731934},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4123614430427551},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3688405156135559},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2455320656299591},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1823318600654602},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10970842838287354}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.8130359649658203},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6477235555648804},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6417909860610962},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5829696655273438},{"id":"https://openalex.org/C31170391","wikidata":"https://www.wikidata.org/wiki/Q188619","display_name":"Hierarchy","level":2,"score":0.4936846196651459},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4706536829471588},{"id":"https://openalex.org/C152724338","wikidata":"https://www.wikidata.org/wiki/Q909442","display_name":"KEGG","level":5,"score":0.45490512251853943},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.441425621509552},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.41406798362731934},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4123614430427551},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3688405156135559},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2455320656299591},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1823318600654602},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10970842838287354},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C34447519","wikidata":"https://www.wikidata.org/wiki/Q179522","display_name":"Market economy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":9,"locations":[{"id":"doi:10.1093/bioinformatics/btx775","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx775","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/8/1404/48915420/bioinformatics_34_8_1404.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29211828","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29211828","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:pure.ed.ac.uk:openaire/60f2661d-e73a-4856-a200-67481b209bee","is_oa":true,"landing_page_url":"https://www.research.ed.ac.uk/en/publications/60f2661d-e73a-4856-a200-67481b209bee","pdf_url":null,"source":{"id":"https://openalex.org/S4306400321","display_name":"Edinburgh Research Explorer (University of Edinburgh)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I98677209","host_organization_name":"University of Edinburgh","host_organization_lineage":["https://openalex.org/I98677209"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Orakov, A, Sakenova, N, Sorokin, A & Goryanin, I 2018, 'ASAR: visual analysis of metagenomes in R', Bioinformatics, vol. 34, no. 8, pp. 1404\u20131405. https://doi.org/10.1093/bioinformatics/btx775","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:nur.nu.edu.kz:123456789/9462","is_oa":true,"landing_page_url":"https://nur.nu.edu.kz/handle/123456789/9462","pdf_url":"https://nur.nu.edu.kz/bitstreams/3e1bdc53-b47b-4993-903b-3173436c771d/download","source":{"id":"https://openalex.org/S4377196417","display_name":"Nazarbayev University Repository (Nazarbayev University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I60559429","host_organization_name":"Nazarbayev University","host_organization_lineage":["https://openalex.org/I60559429"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 34(8), 1404-1405, (2017)","raw_type":"Journal Article"},{"id":"pmh:oai:irdb.nii.ac.jp:01076:0003024508","is_oa":true,"landing_page_url":"https://oist.repo.nii.ac.jp/records/765","pdf_url":"https://oist.repo.nii.ac.jp/record/765/files/Orakov-2018-ASAR_%20visual%20analysis%20of%20metagenom.pdf","source":{"id":"https://openalex.org/S7407056385","display_name":"Institutional Repositories DataBase (IRDB)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I184597095","host_organization_name":"National Institute of Informatics","host_organization_lineage":["https://openalex.org/I184597095"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"journal article"},{"id":"pmh:oai:europepmc.org:4837542","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC5905653","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:5905653","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5905653","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:oist.repo.nii.ac.jp:00000765","is_oa":true,"landing_page_url":"https://oist.repo.nii.ac.jp/?action=repository_uri&item_id=765","pdf_url":null,"source":{"id":"https://openalex.org/S4306402452","display_name":"Okinawa Institute of Science and Technology Graduate University (Okinawa Institute of Science and Technology Graduate University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I142637625","host_organization_name":"Okinawa Institute of Science and Technology Graduate University","host_organization_lineage":["https://openalex.org/I142637625"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://academic.oup.com/bioinformatics/article/34/8/1404/4683460","raw_type":"Journal Article"},{"id":"pmh:oai:pure.ed.ac.uk:publications/60f2661d-e73a-4856-a200-67481b209bee","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.11820/60f2661d-e73a-4856-a200-67481b209bee","pdf_url":null,"source":{"id":"https://openalex.org/S4306400321","display_name":"Edinburgh Research Explorer (University of Edinburgh)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I98677209","host_organization_name":"University of Edinburgh","host_organization_lineage":["https://openalex.org/I98677209"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Orakov, A, Sakenova, N, Sorokin, A & Goryanin, I 2018, 'ASAR: visual analysis of metagenomes in R', Bioinformatics, vol. 34, no. 8, pp. 1404\u20131405. https://doi.org/10.1093/bioinformatics/btx775","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btx775","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx775","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/8/1404/48915420/bioinformatics_34_8_1404.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322443","display_name":"Okinawa Institute of Science and Technology Graduate University","ror":"https://ror.org/02qg15b79"},{"id":"https://openalex.org/F4320327695","display_name":"Nazarbayev University","ror":"https://ror.org/052bx8q98"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2774388828.pdf","grobid_xml":"https://content.openalex.org/works/W2774388828.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W1508412218","https://openalex.org/W2101181144","https://openalex.org/W2110256992","https://openalex.org/W2114034054","https://openalex.org/W2141224543","https://openalex.org/W2337747100","https://openalex.org/W2409427249","https://openalex.org/W2582743722","https://openalex.org/W2951176108","https://openalex.org/W2953312541","https://openalex.org/W4231601595"],"related_works":["https://openalex.org/W1964572291","https://openalex.org/W4387948744","https://openalex.org/W184793361","https://openalex.org/W2352732738","https://openalex.org/W4287378204","https://openalex.org/W2123060905","https://openalex.org/W47352601","https://openalex.org/W638577851","https://openalex.org/W2968354375","https://openalex.org/W2359440920"],"abstract_inverted_index":{"Motivation:":[0],"Functional":[1,61],"and":[2,54,67,82],"taxonomic":[3],"analyses":[4,17],"are":[5,18],"critical":[6],"steps":[7],"in":[8,39],"understanding":[9],"interspecific":[10],"interactions":[11],"within":[12],"microbial":[13],"communities.":[14],"Currently,":[15],"such":[16],"run":[19],"separately,":[20],"which":[21],"complicates":[22],"interpretation":[23],"of":[24,36,56,86],"results.":[25],"Here":[26],"we":[27],"present":[28],"the":[29,87],"ASAR":[30,88],"interactive":[31,47],"tool":[32,50],"for":[33,51],"simultaneous":[34],"analysis":[35,49,62],"metagenomic":[37,57],"data":[38,48,58],"three":[40],"dimensions:":[41],"taxonomy,":[42],"function,":[43],"metagenome.":[44],"Results:":[45],"An":[46],"selection,":[52],"aggregation":[53],"visualization":[55],"is":[59,79,89],"presented.":[60],"with":[63],"a":[64],"SEED":[65],"hierarchy":[66],"pathway":[68],"diagram":[69],"based":[70,74],"on":[71],"KEGG":[72],"orthology":[73],"upon":[75],"MG-RAST":[76],"annotation":[77],"results":[78],"available.":[80],"Availability":[81],"implementation:":[83],"Source":[84],"code":[85],"accessible":[90],"at":[91],"GitHub":[92],"(https://github.com/Askarbek-orakov/ASAR).":[93],"Contact:":[94],"askarbek.orakov@nu.edu.kz":[95],"or":[96],"goryanin@gmail.com.":[97]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
