{"id":"https://openalex.org/W2771017989","doi":"https://doi.org/10.1093/bioinformatics/btx767","title":"SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles","display_name":"SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles","publication_year":2017,"publication_date":"2017-11-22","ids":{"openalex":"https://openalex.org/W2771017989","doi":"https://doi.org/10.1093/bioinformatics/btx767","mag":"2771017989","pmid":"https://pubmed.ncbi.nlm.nih.gov/29186322"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btx767","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx767","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/8/1401/25171181/btx767.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/8/1401/25171181/btx767.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028433887","display_name":"Jasper J. Koehorst","orcid":"https://orcid.org/0000-0001-8172-8981"},"institutions":[{"id":"https://openalex.org/I913481162","display_name":"Wageningen University & Research","ror":"https://ror.org/04qw24q55","country_code":"NL","type":"education","lineage":["https://openalex.org/I913481162"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Jasper J Koehorst","raw_affiliation_strings":["Laboratory of Systems and Synthetic Biology, Wageningen University & Research, Wageningen WE, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Laboratory of Systems and Synthetic Biology, Wageningen University & Research, Wageningen WE, The Netherlands","institution_ids":["https://openalex.org/I913481162"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021255484","display_name":"Jesse C. J. van Dam","orcid":"https://orcid.org/0000-0001-9395-5559"},"institutions":[{"id":"https://openalex.org/I913481162","display_name":"Wageningen University & Research","ror":"https://ror.org/04qw24q55","country_code":"NL","type":"education","lineage":["https://openalex.org/I913481162"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Jesse C J van Dam","raw_affiliation_strings":["Laboratory of Systems and Synthetic Biology, Wageningen University & Research, Wageningen WE, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Laboratory of Systems and Synthetic Biology, Wageningen University & Research, Wageningen WE, The Netherlands","institution_ids":["https://openalex.org/I913481162"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030625153","display_name":"Edoardo Saccenti","orcid":"https://orcid.org/0000-0001-8284-4829"},"institutions":[{"id":"https://openalex.org/I913481162","display_name":"Wageningen University & Research","ror":"https://ror.org/04qw24q55","country_code":"NL","type":"education","lineage":["https://openalex.org/I913481162"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Edoardo Saccenti","raw_affiliation_strings":["Laboratory of Systems and Synthetic Biology, Wageningen University & Research, Wageningen WE, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Laboratory of Systems and Synthetic Biology, Wageningen University & Research, Wageningen WE, The Netherlands","institution_ids":["https://openalex.org/I913481162"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039324414","display_name":"V\u00edtor A. P. Martins dos Santos","orcid":"https://orcid.org/0000-0002-2352-9017"},"institutions":[{"id":"https://openalex.org/I4210153171","display_name":"LifeGlimmer (Germany)","ror":"https://ror.org/058f8dm33","country_code":"DE","type":"company","lineage":["https://openalex.org/I4210153171"]},{"id":"https://openalex.org/I913481162","display_name":"Wageningen University & Research","ror":"https://ror.org/04qw24q55","country_code":"NL","type":"education","lineage":["https://openalex.org/I913481162"]}],"countries":["DE","NL"],"is_corresponding":false,"raw_author_name":"Vitor A P Martins dos Santos","raw_affiliation_strings":["Laboratory of Systems and Synthetic Biology, Wageningen University & Research, Wageningen WE, The Netherlands","LifeGlimmer GmbH, Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"Laboratory of Systems and Synthetic Biology, Wageningen University & Research, Wageningen WE, The Netherlands","institution_ids":["https://openalex.org/I913481162"]},{"raw_affiliation_string":"LifeGlimmer GmbH, Berlin, Germany","institution_ids":["https://openalex.org/I4210153171"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041170743","display_name":"Mar\u00eda Su\u00e1rez\u2010Diez","orcid":"https://orcid.org/0000-0001-5845-146X"},"institutions":[{"id":"https://openalex.org/I913481162","display_name":"Wageningen University & Research","ror":"https://ror.org/04qw24q55","country_code":"NL","type":"education","lineage":["https://openalex.org/I913481162"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Maria Suarez-Diez","raw_affiliation_strings":["Laboratory of Systems and Synthetic Biology, Wageningen University & Research, Wageningen WE, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Laboratory of Systems and Synthetic Biology, Wageningen University & Research, Wageningen WE, The Netherlands","institution_ids":["https://openalex.org/I913481162"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073898339","display_name":"Peter J. Schaap","orcid":"https://orcid.org/0000-0002-4346-6084"},"institutions":[{"id":"https://openalex.org/I913481162","display_name":"Wageningen University & Research","ror":"https://ror.org/04qw24q55","country_code":"NL","type":"education","lineage":["https://openalex.org/I913481162"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Peter J Schaap","raw_affiliation_strings":["Laboratory of Systems and Synthetic Biology, Wageningen University & Research, Wageningen WE, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Laboratory of Systems and Synthetic Biology, Wageningen University & Research, Wageningen WE, The Netherlands","institution_ids":["https://openalex.org/I913481162"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5028433887","https://openalex.org/A5073898339"],"corresponding_institution_ids":["https://openalex.org/I913481162"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":3.4802,"has_fulltext":false,"cited_by_count":64,"citation_normalized_percentile":{"value":0.93633652,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"34","issue":"8","first_page":"1401","last_page":"1403"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8362224102020264},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6953319311141968},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.5197463035583496},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.46920982003211975},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.46472102403640747},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.4631461799144745},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.42925646901130676},{"id":"https://openalex.org/keywords/reusability","display_name":"Reusability","score":0.4226682186126709},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3613656163215637},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3338775038719177},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.31612449884414673},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3059667944908142},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2753015160560608},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.13878920674324036}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8362224102020264},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6953319311141968},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.5197463035583496},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.46920982003211975},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.46472102403640747},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.4631461799144745},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.42925646901130676},{"id":"https://openalex.org/C137981799","wikidata":"https://www.wikidata.org/wiki/Q1369184","display_name":"Reusability","level":3,"score":0.4226682186126709},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3613656163215637},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3338775038719177},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.31612449884414673},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3059667944908142},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2753015160560608},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.13878920674324036}],"mesh":[{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btx767","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx767","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/8/1401/25171181/btx767.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29186322","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29186322","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:5905645","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5905645","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:europepmc.org:4837539","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC5905645","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:wur:oai:library.wur.nl:wurpubs/535645","is_oa":true,"landing_page_url":"https://research.wur.nl/en/publications/sapp-functional-genome-annotation-and-analysis-through-a-semantic","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 34(8), 1401 - 1403","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btx767","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx767","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/8/1401/25171181/btx767.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.6299999952316284}],"awards":[{"id":"https://openalex.org/G1118884208","display_name":null,"funder_award_id":"635536","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3748656914","display_name":null,"funder_award_id":"Norway","funder_id":"https://openalex.org/F4320323299","funder_display_name":"Norges Forskningsr\u00e5d"},{"id":"https://openalex.org/G635427863","display_name":null,"funder_award_id":"305340","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8750081735","display_name":null,"funder_award_id":"248792","funder_id":"https://openalex.org/F4320323299","funder_display_name":"Norges Forskningsr\u00e5d"},{"id":"https://openalex.org/G8900727303","display_name":null,"funder_award_id":"635536","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320323299","display_name":"Norges Forskningsr\u00e5d","ror":"https://ror.org/00epmv149"},{"id":"https://openalex.org/F4320332999","display_name":"Horizon 2020 Framework Programme","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320334952","display_name":"Wageningen University and Research","ror":"https://ror.org/04qw24q55"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2771017989.pdf","grobid_xml":"https://content.openalex.org/works/W2771017989.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W2013667086","https://openalex.org/W2123171788","https://openalex.org/W2143485490","https://openalex.org/W2161745371","https://openalex.org/W2302501749","https://openalex.org/W2515536164","https://openalex.org/W2560504383","https://openalex.org/W2751452222","https://openalex.org/W2773787581","https://openalex.org/W2951333474","https://openalex.org/W4206486014","https://openalex.org/W4232389542"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2129965124","https://openalex.org/W2095582247","https://openalex.org/W4360832129","https://openalex.org/W2152773768","https://openalex.org/W2892158704","https://openalex.org/W2387342845","https://openalex.org/W2336056566","https://openalex.org/W2367415280","https://openalex.org/W2952242410"],"abstract_inverted_index":{"jasperkoehorst@gmail.com":[0],"or":[1],"peter.schaap@wur.nl.":[2]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":20},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":13},{"year":2018,"cited_by_count":8}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
