{"id":"https://openalex.org/W2769159716","doi":"https://doi.org/10.1093/bioinformatics/btx764","title":"CytoCtrlAnalyser: a Cytoscape app for biomolecular network controllability analysis","display_name":"CytoCtrlAnalyser: a Cytoscape app for biomolecular network controllability analysis","publication_year":2017,"publication_date":"2017-11-22","ids":{"openalex":"https://openalex.org/W2769159716","doi":"https://doi.org/10.1093/bioinformatics/btx764","mag":"2769159716","pmid":"https://pubmed.ncbi.nlm.nih.gov/29186337"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btx764","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx764","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/8/1428/25120160/btx764.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/8/1428/25120160/btx764.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103255206","display_name":"Lin Wu","orcid":"https://orcid.org/0000-0003-0239-4456"},"institutions":[{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Lin Wu","raw_affiliation_strings":["Division of Biomedical Engineering, University of Saskatchewan, Saskatoon, SK, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Biomedical Engineering, University of Saskatchewan, Saskatoon, SK, Canada","institution_ids":["https://openalex.org/I32625721"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100719013","display_name":"Min Li","orcid":"https://orcid.org/0000-0002-0188-1394"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Min Li","raw_affiliation_strings":["School of Information Science and Engineering, Central South University, Changsha, Hunan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Central South University, Changsha, Hunan, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100438360","display_name":"Jianxin Wang","orcid":"https://orcid.org/0000-0003-1516-0480"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianxin Wang","raw_affiliation_strings":["School of Information Science and Engineering, Central South University, Changsha, Hunan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Central South University, Changsha, Hunan, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091157395","display_name":"Fang\u2010Xiang Wu","orcid":"https://orcid.org/0000-0002-4593-9332"},"institutions":[{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Fang-Xiang Wu","raw_affiliation_strings":["Department of Mechanical Engineering, University of Saskatchewan, Saskatoon, SK, Canada","Division of Biomedical Engineering, University of Saskatchewan, Saskatoon, SK, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mechanical Engineering, University of Saskatchewan, Saskatoon, SK, Canada","institution_ids":["https://openalex.org/I32625721"]},{"raw_affiliation_string":"Division of Biomedical Engineering, University of Saskatchewan, Saskatoon, SK, Canada","institution_ids":["https://openalex.org/I32625721"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5091157395"],"corresponding_institution_ids":["https://openalex.org/I32625721"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.5303,"has_fulltext":true,"cited_by_count":27,"citation_normalized_percentile":{"value":0.83099429,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":99},"biblio":{"volume":"34","issue":"8","first_page":"1428","last_page":"1430"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.5031999945640564,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.5031999945640564,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.23559999465942383,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.03319999948143959,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/controllability","display_name":"Controllability","score":0.9510251879692078},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7709611058235168},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.6949617266654968},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.6287282705307007},{"id":"https://openalex.org/keywords/network-topology","display_name":"Network topology","score":0.6137356162071228},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6024446487426758},{"id":"https://openalex.org/keywords/network-controllability","display_name":"Network controllability","score":0.5583817958831787},{"id":"https://openalex.org/keywords/complex-network","display_name":"Complex network","score":0.47705379128456116},{"id":"https://openalex.org/keywords/network-analysis","display_name":"Network analysis","score":0.45367950201034546},{"id":"https://openalex.org/keywords/control","display_name":"Control (management)","score":0.4349595308303833},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.42509379982948303},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3717460632324219},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.242939293384552},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.22639939188957214},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.2012944519519806},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.14061594009399414},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10450124740600586},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.08678284287452698},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.07417228817939758}],"concepts":[{"id":"https://openalex.org/C48209547","wikidata":"https://www.wikidata.org/wiki/Q1331104","display_name":"Controllability","level":2,"score":0.9510251879692078},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7709611058235168},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.6949617266654968},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.6287282705307007},{"id":"https://openalex.org/C199845137","wikidata":"https://www.wikidata.org/wiki/Q145490","display_name":"Network topology","level":2,"score":0.6137356162071228},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6024446487426758},{"id":"https://openalex.org/C41982775","wikidata":"https://www.wikidata.org/wiki/Q7000977","display_name":"Network controllability","level":4,"score":0.5583817958831787},{"id":"https://openalex.org/C34947359","wikidata":"https://www.wikidata.org/wiki/Q665189","display_name":"Complex network","level":2,"score":0.47705379128456116},{"id":"https://openalex.org/C32946077","wikidata":"https://www.wikidata.org/wiki/Q618079","display_name":"Network analysis","level":2,"score":0.45367950201034546},{"id":"https://openalex.org/C2775924081","wikidata":"https://www.wikidata.org/wiki/Q55608371","display_name":"Control (management)","level":2,"score":0.4349595308303833},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.42509379982948303},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3717460632324219},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.242939293384552},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.22639939188957214},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.2012944519519806},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.14061594009399414},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10450124740600586},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.08678284287452698},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.07417228817939758},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C28826006","wikidata":"https://www.wikidata.org/wiki/Q33521","display_name":"Applied mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C53811970","wikidata":"https://www.wikidata.org/wiki/Q5062194","display_name":"Centrality","level":2,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C117045392","wikidata":"https://www.wikidata.org/wiki/Q4899215","display_name":"Betweenness centrality","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btx764","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx764","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/8/1428/25120160/btx764.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29186337","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29186337","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btx764","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx764","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/8/1428/25120160/btx764.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1467931350","display_name":null,"funder_award_id":"61772552 and No.61622213","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2769159716.pdf","grobid_xml":"https://content.openalex.org/works/W2769159716.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W1071664642","https://openalex.org/W2018239124","https://openalex.org/W2061854785","https://openalex.org/W2063716346","https://openalex.org/W2101420429","https://openalex.org/W2106308430","https://openalex.org/W2124655218","https://openalex.org/W2159675211","https://openalex.org/W2180749449","https://openalex.org/W2296217093","https://openalex.org/W2318071399","https://openalex.org/W2337819340","https://openalex.org/W2508622936","https://openalex.org/W2620653540","https://openalex.org/W6627168673"],"related_works":["https://openalex.org/W2229005201","https://openalex.org/W2318071399","https://openalex.org/W2287125742","https://openalex.org/W2092994772","https://openalex.org/W2677370068","https://openalex.org/W1884503243","https://openalex.org/W2395500066","https://openalex.org/W2912349718","https://openalex.org/W2061627113","https://openalex.org/W2438037379"],"abstract_inverted_index":{"Summary:":[0],"Studying":[1],"the":[2,48,86,106,114],"controllability":[3,26,37,62,115],"of":[4,27,63,108,116,129],"biomolecular":[5,28,64,138],"networks":[6,29],"can":[7,84],"result":[8],"in":[9,71,113,137],"profound":[10],"knowledge":[11],"about":[12],"molecular":[13],"biological":[14],"systems.":[15],"However,":[16],"there":[17],"is":[18,51],"no":[19],"comprehensive":[20,58],"and":[21,76,141],"easy-to-use":[22],"platform":[23,59],"for":[24,33,60,97,122,145],"analyzing":[25,34,61],"although":[30],"various":[31],"algorithms":[32,67],"complex":[35],"network":[36,74],"have":[38,68],"been":[39,69],"proposed":[40],"recently.":[41],"In":[42],"this":[43],"application":[44],"note,":[45],"we":[46],"develop":[47],"CytoCtrlAnalyser":[49,118],"which":[50,89],"a":[52,57,120],"Cytoscape":[53],"app":[54],"to":[55],"provide":[56],"networks.":[65,117,139],"Nine":[66],"integrated":[70],"CytoCtrlAnalyser.":[72],"With":[73],"topologies":[75],"customized":[77],"control":[78,95,100],"settings":[79],"imported":[80],"into":[81],"CytoCtrlAnalyser,":[82],"users":[83],"identify":[85],"steering":[87],"nodes":[88,109,136],"should":[90],"be":[91],"actuated":[92],"by":[93],"input":[94],"signals":[96],"achieving":[98],"different":[99,111],"objectives":[101],"as":[102,104,127],"well":[103],"investigate":[105],"importance":[107],"from":[110],"perspectives":[112],"offers":[119],"tool":[121],"many":[123],"promising":[124],"applications,":[125],"such":[126],"identification":[128],"potential":[130],"drug":[131],"targets":[132],"or":[133],"biologically":[134],"important":[135],"Availability":[140],"implementation:":[142],"Freely":[143],"available":[144,156],"downloading":[146],"at":[147,157],"http://apps.cytoscape.org/apps/cytoctrlanalyser.":[148],"Contact:":[149],"faw341@mail.usask.ca.":[150],"Supplementary":[151,153],"information:":[152],"data":[154],"are":[155],"Bioinformatics":[158],"online.":[159]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":4}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
