{"id":"https://openalex.org/W2769438273","doi":"https://doi.org/10.1093/bioinformatics/btx763","title":"shinyCircos: an R/Shiny application for interactive creation of Circos plot","display_name":"shinyCircos: an R/Shiny application for interactive creation of Circos plot","publication_year":2017,"publication_date":"2017-11-23","ids":{"openalex":"https://openalex.org/W2769438273","doi":"https://doi.org/10.1093/bioinformatics/btx763","mag":"2769438273","pmid":"https://pubmed.ncbi.nlm.nih.gov/29186362"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btx763","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx763","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/7/1229/25119566/btx763.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/7/1229/25119566/btx763.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031656887","display_name":"Yiming Yu","orcid":"https://orcid.org/0000-0002-9919-7282"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yiming Yu","raw_affiliation_strings":["National Key Laboratory of Crop Genetic Improvement, National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Key Laboratory of Crop Genetic Improvement, National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015858296","display_name":"Yidan Ouyang","orcid":"https://orcid.org/0000-0003-4966-1005"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yidan Ouyang","raw_affiliation_strings":["National Key Laboratory of Crop Genetic Improvement, National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, China"],"raw_orcid":"https://orcid.org/0000-0003-4966-1005","affiliations":[{"raw_affiliation_string":"National Key Laboratory of Crop Genetic Improvement, National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015085832","display_name":"Wen Yao","orcid":"https://orcid.org/0000-0002-0643-506X"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]},{"id":"https://openalex.org/I4750791","display_name":"Henan Agricultural University","ror":"https://ror.org/04eq83d71","country_code":"CN","type":"education","lineage":["https://openalex.org/I4750791"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Wen Yao","raw_affiliation_strings":["College of Life Sciences, Henan Agricultural University, Zhengzhou, China","National Key Laboratory of Crop Genetic Improvement, National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Henan Agricultural University, Zhengzhou, China","institution_ids":["https://openalex.org/I4750791"]},{"raw_affiliation_string":"National Key Laboratory of Crop Genetic Improvement, National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, China","institution_ids":["https://openalex.org/I204823248"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5015085832","https://openalex.org/A5015858296"],"corresponding_institution_ids":["https://openalex.org/I204823248","https://openalex.org/I4750791"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":6.8922,"has_fulltext":true,"cited_by_count":337,"citation_normalized_percentile":{"value":0.97900201,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"34","issue":"7","first_page":"1229","last_page":"1231"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.570900022983551,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.570900022983551,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.13680000603199005,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.05920000001788139,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/plot","display_name":"Plot (graphics)","score":0.7562882900238037},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.583958625793457},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5284043550491333},{"id":"https://openalex.org/keywords/engineering-drawing","display_name":"Engineering drawing","score":0.3365786671638489},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2144368290901184},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.20690828561782837},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.11844232678413391}],"concepts":[{"id":"https://openalex.org/C167651023","wikidata":"https://www.wikidata.org/wiki/Q1474611","display_name":"Plot (graphics)","level":2,"score":0.7562882900238037},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.583958625793457},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5284043550491333},{"id":"https://openalex.org/C199639397","wikidata":"https://www.wikidata.org/wiki/Q1788588","display_name":"Engineering drawing","level":1,"score":0.3365786671638489},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2144368290901184},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.20690828561782837},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.11844232678413391}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btx763","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx763","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/7/1229/25119566/btx763.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29186362","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29186362","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btx763","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx763","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/7/1229/25119566/btx763.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1917382930","display_name":null,"funder_award_id":"31371599","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G305251389","display_name":null,"funder_award_id":"2016YFD0100802","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3087925222","display_name":null,"funder_award_id":"31771873","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4609023192","display_name":null,"funder_award_id":"2016YFD0100802","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G8483404817","display_name":null,"funder_award_id":"31771873 and 31371599","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null},{"id":"https://openalex.org/F4320336648","display_name":"National Program for Support of Top-notch Young Professionals","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2769438273.pdf","grobid_xml":"https://content.openalex.org/works/W2769438273.grobid-xml"},"referenced_works_count":8,"referenced_works":["https://openalex.org/W2023923970","https://openalex.org/W2107940314","https://openalex.org/W2110014529","https://openalex.org/W2140916263","https://openalex.org/W2158804744","https://openalex.org/W2168440186","https://openalex.org/W2268687088","https://openalex.org/W6681072463"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2897156099","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W4252196339","https://openalex.org/W2553486127"],"abstract_inverted_index":{"Summary:":[0],"Creation":[1],"of":[2,7,21,33,53,83],"Circos":[3,26,54,84],"plot":[4,27],"is":[5,108],"one":[6],"the":[8,17,78],"most":[9],"efficient":[10],"approaches":[11],"to":[12,24,73,77],"visualize":[13],"genomic":[14],"data.":[15],"However,":[16],"installation":[18],"and":[19,90,96,99,112],"use":[20,66,76],"existing":[22],"tools":[23],"make":[25],"are":[28,102],"challenging":[29],"for":[30,50,64,114],"users":[31],"lacking":[32],"coding":[34],"experiences.":[35],"To":[36],"address":[37],"this":[38],"issue,":[39],"we":[40],"developed":[41],"an":[42],"R/Shiny":[43],"application":[44],"shinyCircos,":[45],"a":[46],"graphical":[47],"user":[48],"interface":[49],"interactive":[51],"creation":[52],"plot.":[55],"shinyCircos":[56,98,107],"can":[57],"be":[58,87],"easily":[59,88],"installed":[60],"either":[61],"on":[62,68],"computers":[63],"personal":[65],"or":[67,70,119],"local":[69],"public":[71],"servers":[72],"provide":[74],"online":[75,115],"community.":[79],"Furthermore,":[80],"various":[81],"types":[82],"plots":[85],"could":[86],"generated":[89],"decorated":[91],"with":[92],"simple":[93],"mouse-click.":[94],"Availability":[95],"implementation:":[97],"its":[100],"manual":[101],"freely":[103],"available":[104],"at":[105,110],"https://github.com/venyao/shinyCircos.":[106],"deployed":[109],"https://yimingyu.shinyapps.io/shinycircos/":[111],"http://shinycircos.ncpgr.cn/":[113],"use.":[116],"Contact:":[117],"diana1983941@mail.hzau.edu.cn":[118],"yaowen@henau.edu.cn.":[120]},"counts_by_year":[{"year":2026,"cited_by_count":9},{"year":2025,"cited_by_count":33},{"year":2024,"cited_by_count":49},{"year":2023,"cited_by_count":65},{"year":2022,"cited_by_count":59},{"year":2021,"cited_by_count":53},{"year":2020,"cited_by_count":44},{"year":2019,"cited_by_count":20},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
