{"id":"https://openalex.org/W2769860552","doi":"https://doi.org/10.1093/bioinformatics/btx760","title":"FUn: a framework for interactive visualizations of large, high-dimensional datasets on the web","display_name":"FUn: a framework for interactive visualizations of large, high-dimensional datasets on the web","publication_year":2017,"publication_date":"2017-11-23","ids":{"openalex":"https://openalex.org/W2769860552","doi":"https://doi.org/10.1093/bioinformatics/btx760","mag":"2769860552","pmid":"https://pubmed.ncbi.nlm.nih.gov/29186333"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btx760","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx760","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/8/1433/48914832/bioinformatics_34_8_1433.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/8/1433/48914832/bioinformatics_34_8_1433.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046410250","display_name":"Daniel Probst","orcid":"https://orcid.org/0000-0003-1737-4407"},"institutions":[{"id":"https://openalex.org/I118564535","display_name":"University of Bern","ror":"https://ror.org/02k7v4d05","country_code":"CH","type":"education","lineage":["https://openalex.org/I118564535"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Daniel Probst","raw_affiliation_strings":["Department of Chemistry and Biochemistry, National Center for Competence in Research NCCR TransCure, University of Berne, Berne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Biochemistry, National Center for Competence in Research NCCR TransCure, University of Berne, Berne, Switzerland","institution_ids":["https://openalex.org/I118564535"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040848839","display_name":"Jean\u2010Louis Reymond","orcid":"https://orcid.org/0000-0003-2724-2942"},"institutions":[{"id":"https://openalex.org/I118564535","display_name":"University of Bern","ror":"https://ror.org/02k7v4d05","country_code":"CH","type":"education","lineage":["https://openalex.org/I118564535"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Jean-Louis Reymond","raw_affiliation_strings":["Department of Chemistry and Biochemistry, National Center for Competence in Research NCCR TransCure, University of Berne, Berne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Biochemistry, National Center for Competence in Research NCCR TransCure, University of Berne, Berne, Switzerland","institution_ids":["https://openalex.org/I118564535"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5040848839","https://openalex.org/A5046410250"],"corresponding_institution_ids":["https://openalex.org/I118564535"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":3.2894,"has_fulltext":true,"cited_by_count":84,"citation_normalized_percentile":{"value":0.94849418,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"34","issue":"8","first_page":"1433","last_page":"1435"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.438400000333786,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.438400000333786,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.15330000221729279,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13398","display_name":"Data Analysis with R","score":0.050700001418590546,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.82992023229599},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6671936511993408},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.6425060629844666},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.5812482833862305},{"id":"https://openalex.org/keywords/toolchain","display_name":"Toolchain","score":0.5777370929718018},{"id":"https://openalex.org/keywords/rendering","display_name":"Rendering (computer graphics)","score":0.565700113773346},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.4987447261810303},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.4817659854888916},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.47940728068351746},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.47790393233299255},{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.46381327509880066},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.461275577545166},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2766852080821991},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.19663402438163757},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.11108937859535217},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10171318054199219}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.82992023229599},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6671936511993408},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.6425060629844666},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.5812482833862305},{"id":"https://openalex.org/C2777062904","wikidata":"https://www.wikidata.org/wiki/Q545406","display_name":"Toolchain","level":3,"score":0.5777370929718018},{"id":"https://openalex.org/C205711294","wikidata":"https://www.wikidata.org/wiki/Q176953","display_name":"Rendering (computer graphics)","level":2,"score":0.565700113773346},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.4987447261810303},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.4817659854888916},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.47940728068351746},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.47790393233299255},{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.46381327509880066},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.461275577545166},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2766852080821991},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.19663402438163757},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.11108937859535217},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10171318054199219}],"mesh":[{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btx760","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx760","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/8/1433/48914832/bioinformatics_34_8_1433.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29186333","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29186333","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:doc.rero.ch:332718","is_oa":false,"landing_page_url":"http://doc.rero.ch/record/332718/files/BIOINFORMATICS_34_8_1433.pdf","pdf_url":"http://doc.rero.ch/record/332718/files/BIOINFORMATICS_34_8_1433.pdf","source":{"id":"https://openalex.org/S4306402253","display_name":"RERO DOC (Universit\u00e4t Bern)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null},{"id":"pmh:doi:10.7892/boris.108136","is_oa":false,"landing_page_url":"https://boris-portal.unibe.ch/handle/20.500.12422/156294","pdf_url":null,"source":{"id":"https://openalex.org/S4406922384","display_name":"Open MIND","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"JournalArticle"},{"id":"pmh:oai:boris.unibe.ch:108136","is_oa":false,"landing_page_url":"https://boris.unibe.ch/108136/","pdf_url":null,"source":{"id":"https://openalex.org/S4306401747","display_name":"BORIS (University Library Bern)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210103840","host_organization_name":"Nakuru County Council","host_organization_lineage":["https://openalex.org/I4210103840"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Probst, Daniel; Reymond, Jean-Louis (2018). FUn: A Framework for Interactive Visualizations of Large, High Dimensional Datasets on the Web. Bioinformatics, 34(8), pp. 1433-1435. Oxford University Press 10.1093/bioinformatics/btx760 &lt;http://dx.doi.org/10.1093/bioinformatics/btx760&gt;","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btx760","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx760","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/8/1433/48914832/bioinformatics_34_8_1433.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.49000000953674316,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320320924","display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","ror":"https://ror.org/00yjd3n13"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2769860552.pdf","grobid_xml":"https://content.openalex.org/works/W2769860552.grobid-xml"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W2027221091","https://openalex.org/W2062450879","https://openalex.org/W2109574129","https://openalex.org/W2135415614","https://openalex.org/W2161768947","https://openalex.org/W2176758925","https://openalex.org/W2346982987","https://openalex.org/W2478815458","https://openalex.org/W2596398464"],"related_works":["https://openalex.org/W4283656801","https://openalex.org/W1545333017","https://openalex.org/W4283785055","https://openalex.org/W3011111376","https://openalex.org/W2293992322","https://openalex.org/W3167387566","https://openalex.org/W2896388912","https://openalex.org/W2610221865","https://openalex.org/W4229034437","https://openalex.org/W2470472650"],"abstract_inverted_index":{"Motivation:":[0],"During":[1],"the":[2,30,40,71,76,101,124,138,172,216,226,232,238],"past":[3],"decade,":[4],"big":[5,80,135],"data":[6,68,81,84,106,147,227],"have":[7],"become":[8],"a":[9,36,109,160,164,190,197],"major":[10],"tool":[11],"in":[12,95,231],"scientific":[13,44,132],"endeavors.":[14],"Although":[15],"statistical":[16,87],"methods":[17],"and":[18,24,49,56,119,126,141,151,167,210,215,222,225],"algorithms":[19],"are":[20,148,235],"well-suited":[21],"for":[22,35,100],"analyzing":[23],"summarizing":[25],"enormous":[26],"amounts":[27,145],"of":[28,39,63,79,103,105,112,140,146,163,174,179,220],"data,":[29,136],"results":[31],"do":[32,58],"not":[33,59],"allow":[34,99],"visual":[37,185],"inspection":[38],"entire":[41],"data.":[42],"Current":[43],"software,":[45],"including":[46],"R":[47],"packages":[48],"Python":[50],"libraries":[51],"such":[52,115],"as":[53,116],"ggplot2,":[54],"matplotlib":[55],"plot.ly,":[57],"support":[60],"interactive":[61,176],"visualizations":[62,178],"datasets":[64],"exceeding":[65],"100":[66],"000":[67],"points":[69,107],"on":[70,108,202,237],"web.":[72],"Other":[73],"solutions":[74],"enable":[75],"web-based":[77],"visualization":[78,139],"only":[82],"through":[83],"reduction":[85],"or":[86,244],"representations.":[88],"However,":[89],"recent":[90,218],"hardware":[91,114],"developments,":[92],"especially":[93],"advancements":[94],"graphical":[96],"processing":[97],"units,":[98],"rendering":[102],"millions":[104],"wide":[110],"range":[111],"consumer":[113],"laptops,":[117],"tablets":[118],"mobile":[120],"phones.":[121],"Similar":[122],"to":[123,129,195],"challenges":[125],"opportunities":[127],"brought":[128],"virtually":[130],"every":[131],"field":[133],"by":[134],"both":[137,149],"interaction":[142],"with":[143],"copious":[144],"demanding":[150],"hold":[152],"great":[153],"promise.":[154],"Results:":[155],"Here":[156],"we":[157],"present":[158],"FUn,":[159],"framework":[161],"consisting":[162],"client":[165],"(Faerun)":[166],"server":[168],"(Underdark)":[169],"module,":[170],"facilitating":[171],"creation":[173],"web-based,":[175],"3D":[177],"large":[180],"datasets,":[181],"enabling":[182],"record":[183],"level":[184],"inspection.":[186],"We":[187],"also":[188],"introduce":[189],"reference":[191,233],"implementation":[192],"providing":[193],"access":[194],"SureChEMBL,":[196],"database":[198],"containing":[199],"patent":[200],"information":[201],"more":[203],"than":[204],"17":[205],"million":[206],"chemical":[207],"compounds.":[208],"Availability":[209],"implementation:":[211],"The":[212],"source":[213],"code":[214],"most":[217],"builds":[219],"Faerun":[221],"Underdark,":[223],"Lore.js":[224],"preprocessing":[228],"toolchain":[229],"used":[230],"implementation,":[234],"available":[236],"project":[239],"website":[240],"(http://doc.gdb.tools/fun/).":[241],"Contact:":[242],"daniel.probst@dcb.unibe.ch":[243],"jean-louis.reymond@dcb.unibe.ch.":[245]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":17},{"year":2020,"cited_by_count":16},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":1}],"updated_date":"2026-08-27T14:10:00.468798","created_date":"2025-10-10T00:00:00"}
