{"id":"https://openalex.org/W2770364859","doi":"https://doi.org/10.1093/bioinformatics/btx741","title":"Reproducible and flexible simulation experiments with ML-Rules and SESSL","display_name":"Reproducible and flexible simulation experiments with ML-Rules and SESSL","publication_year":2017,"publication_date":"2017-11-22","ids":{"openalex":"https://openalex.org/W2770364859","doi":"https://doi.org/10.1093/bioinformatics/btx741","mag":"2770364859","pmid":"https://pubmed.ncbi.nlm.nih.gov/29186288"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btx741","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx741","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/8/1424/25120146/btx741.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/8/1424/25120146/btx741.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061972689","display_name":"Tom Warnke","orcid":"https://orcid.org/0000-0002-8196-2943"},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"T Warnke","raw_affiliation_strings":["Modeling and Simulation group, Institute of Computer Science, University of Rostock, Rostock, Germany"],"affiliations":[{"raw_affiliation_string":"Modeling and Simulation group, Institute of Computer Science, University of Rostock, Rostock, Germany","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109384221","display_name":"Tobias Helms","orcid":null},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"T Helms","raw_affiliation_strings":["Modeling and Simulation group, Institute of Computer Science, University of Rostock, Rostock, Germany"],"affiliations":[{"raw_affiliation_string":"Modeling and Simulation group, Institute of Computer Science, University of Rostock, Rostock, Germany","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063515034","display_name":"Adelinde M. Uhrmacher","orcid":"https://orcid.org/0000-0001-5256-4682"},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"A M Uhrmacher","raw_affiliation_strings":["Modeling and Simulation group, Institute of Computer Science, University of Rostock, Rostock, Germany"],"affiliations":[{"raw_affiliation_string":"Modeling and Simulation group, Institute of Computer Science, University of Rostock, Rostock, Germany","institution_ids":["https://openalex.org/I4665924"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5061972689"],"corresponding_institution_ids":["https://openalex.org/I4665924"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.5167,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.72533662,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"34","issue":"8","first_page":"1424","last_page":"1427"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11195","display_name":"Simulation Techniques and Applications","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11195","display_name":"Simulation Techniques and Applications","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9818000197410583,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/executable","display_name":"Executable","score":0.8867079615592957},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8212917447090149},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.7224453687667847},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.6830370426177979},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.6142914295196533},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.5668754577636719},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5619919896125793},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.4397699236869812},{"id":"https://openalex.org/keywords/scala","display_name":"Scala","score":0.4259192943572998},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.3367667496204376},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.10088622570037842}],"concepts":[{"id":"https://openalex.org/C160145156","wikidata":"https://www.wikidata.org/wiki/Q778586","display_name":"Executable","level":2,"score":0.8867079615592957},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8212917447090149},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.7224453687667847},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.6830370426177979},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.6142914295196533},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.5668754577636719},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5619919896125793},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.4397699236869812},{"id":"https://openalex.org/C109701466","wikidata":"https://www.wikidata.org/wiki/Q460584","display_name":"Scala","level":3,"score":0.4259192943572998},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.3367667496204376},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.10088622570037842},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btx741","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx741","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/8/1424/25120146/btx741.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29186288","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29186288","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btx741","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx741","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/8/1424/25120146/btx741.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7912506139","display_name":null,"funder_award_id":"UH 66/13","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2770364859.pdf","grobid_xml":"https://content.openalex.org/works/W2770364859.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W1974143589","https://openalex.org/W1982903250","https://openalex.org/W1986649132","https://openalex.org/W2023568310","https://openalex.org/W2038669746","https://openalex.org/W2071953960","https://openalex.org/W2084924279","https://openalex.org/W2123783513","https://openalex.org/W2151251638","https://openalex.org/W2155418451","https://openalex.org/W2163493106","https://openalex.org/W2615981627","https://openalex.org/W4249517230","https://openalex.org/W4251538155","https://openalex.org/W6668306068"],"related_works":["https://openalex.org/W17155033","https://openalex.org/W4248962295","https://openalex.org/W2911968761","https://openalex.org/W3207760230","https://openalex.org/W1496222301","https://openalex.org/W2890121425","https://openalex.org/W2204875185","https://openalex.org/W4232952072","https://openalex.org/W3040669356","https://openalex.org/W4211064201"],"abstract_inverted_index":{"tom.warnke@uni-rostock.de.":[0]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
