{"id":"https://openalex.org/W2767332469","doi":"https://doi.org/10.1093/bioinformatics/btx722","title":"Sequential search leads to faster, more efficient fragment-based<i>de novo</i>protein structure prediction","display_name":"Sequential search leads to faster, more efficient fragment-based<i>de novo</i>protein structure prediction","publication_year":2017,"publication_date":"2017-11-08","ids":{"openalex":"https://openalex.org/W2767332469","doi":"https://doi.org/10.1093/bioinformatics/btx722","mag":"2767332469","pmid":"https://pubmed.ncbi.nlm.nih.gov/29136098"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btx722","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx722","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/7/1132/25119471/btx722.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/7/1132/25119471/btx722.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059371250","display_name":"Saulo H. P. de Oliveira","orcid":"https://orcid.org/0000-0002-9230-7610"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Saulo H P de Oliveira","raw_affiliation_strings":["Department of Statistics, University of Oxford, Oxford, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Statistics, University of Oxford, Oxford, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064137444","display_name":"Eleanor C. Law","orcid":"https://orcid.org/0000-0001-5591-7316"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Eleanor C Law","raw_affiliation_strings":["Department of Statistics, University of Oxford, Oxford, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Statistics, University of Oxford, Oxford, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078567532","display_name":"Jiye Shi","orcid":"https://orcid.org/0000-0002-9628-8680"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210123885","display_name":"Shanghai Institute of Applied Physics","ror":"https://ror.org/02w6gr951","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210123885"]},{"id":"https://openalex.org/I4210134054","display_name":"UCB Pharma (United Kingdom)","ror":"https://ror.org/03428qp74","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210134054","https://openalex.org/I85722119"]}],"countries":["CN","GB"],"is_corresponding":false,"raw_author_name":"Jiye Shi","raw_affiliation_strings":["Department of Informatics, UCB Pharma, Slough, UK","Division of Physical Biology, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, UCB Pharma, Slough, UK","institution_ids":["https://openalex.org/I4210134054"]},{"raw_affiliation_string":"Division of Physical Biology, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai, China","institution_ids":["https://openalex.org/I4210123885","https://openalex.org/I19820366"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015572211","display_name":"Charlotte M. Deane","orcid":"https://orcid.org/0000-0003-1388-2252"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Charlotte M Deane","raw_affiliation_strings":["Department of Statistics, University of Oxford, Oxford, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Statistics, University of Oxford, Oxford, UK","institution_ids":["https://openalex.org/I40120149"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5059371250"],"corresponding_institution_ids":["https://openalex.org/I40120149"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.7849,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.7212446,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"34","issue":"7","first_page":"1132","last_page":"1140"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.7239999771118164,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.7239999771118164,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.23739999532699585,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.007199999876320362,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7115868926048279},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.5359566807746887},{"id":"https://openalex.org/keywords/fragment","display_name":"Fragment (logic)","score":0.5138692855834961},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5085288286209106},{"id":"https://openalex.org/keywords/decoy","display_name":"Decoy","score":0.43949973583221436},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4244900345802307},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.39544832706451416},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.32561832666397095},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.30019235610961914},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1276077926158905}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7115868926048279},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.5359566807746887},{"id":"https://openalex.org/C2776235265","wikidata":"https://www.wikidata.org/wiki/Q18392052","display_name":"Fragment (logic)","level":2,"score":0.5138692855834961},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5085288286209106},{"id":"https://openalex.org/C2779179475","wikidata":"https://www.wikidata.org/wiki/Q3545649","display_name":"Decoy","level":3,"score":0.43949973583221436},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4244900345802307},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.39544832706451416},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32561832666397095},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.30019235610961914},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1276077926158905},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053454","descriptor_name":"Caspase 12","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D053454","descriptor_name":"Caspase 12","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D053454","descriptor_name":"Caspase 12","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D053454","descriptor_name":"Caspase 12","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D053454","descriptor_name":"Caspase 12","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D053454","descriptor_name":"Caspase 12","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btx722","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx722","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/7/1132/25119471/btx722.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29136098","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29136098","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:4991192","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6030820","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:ora.ox.ac.uk:uuid:e6822352-78b7-4e25-b254-eda4b00fd515","is_oa":true,"landing_page_url":"https://ora.ox.ac.uk/objects/uuid:e6822352-78b7-4e25-b254-eda4b00fd515","pdf_url":null,"source":{"id":"https://openalex.org/S4306402636","display_name":"Oxford University Research Archive (ORA) (University of Oxford)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I40120149","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/I40120149"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btx722","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx722","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/7/1132/25119471/btx722.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":60,"referenced_works":["https://openalex.org/W19019357","https://openalex.org/W260268871","https://openalex.org/W265416394","https://openalex.org/W1493324970","https://openalex.org/W1895528264","https://openalex.org/W1988695007","https://openalex.org/W2006332277","https://openalex.org/W2007273932","https://openalex.org/W2013425283","https://openalex.org/W2019830467","https://openalex.org/W2024035237","https://openalex.org/W2024308910","https://openalex.org/W2049269366","https://openalex.org/W2061042699","https://openalex.org/W2066507577","https://openalex.org/W2076905564","https://openalex.org/W2077914505","https://openalex.org/W2085277871","https://openalex.org/W2085628457","https://openalex.org/W2092918167","https://openalex.org/W2092995112","https://openalex.org/W2094458603","https://openalex.org/W2097775366","https://openalex.org/W2099464380","https://openalex.org/W2101810621","https://openalex.org/W2104383008","https://openalex.org/W2109801072","https://openalex.org/W2110995682","https://openalex.org/W2112444949","https://openalex.org/W2115540209","https://openalex.org/W2117020466","https://openalex.org/W2130479394","https://openalex.org/W2136799255","https://openalex.org/W2141885858","https://openalex.org/W2142677515","https://openalex.org/W2145268834","https://openalex.org/W2151873948","https://openalex.org/W2153153865","https://openalex.org/W2153187042","https://openalex.org/W2161151688","https://openalex.org/W2162276362","https://openalex.org/W2166701319","https://openalex.org/W2168321064","https://openalex.org/W2171559274","https://openalex.org/W2184623063","https://openalex.org/W2213268248","https://openalex.org/W2316115634","https://openalex.org/W2323927982","https://openalex.org/W2337606518","https://openalex.org/W2346106765","https://openalex.org/W2389430365","https://openalex.org/W2411608355","https://openalex.org/W2424119471","https://openalex.org/W2435948545","https://openalex.org/W2524386004","https://openalex.org/W2552029149","https://openalex.org/W2570756324","https://openalex.org/W2574496196","https://openalex.org/W2737584047","https://openalex.org/W4320301318"],"related_works":["https://openalex.org/W2173669824","https://openalex.org/W3004912075","https://openalex.org/W3022225908","https://openalex.org/W2913065212","https://openalex.org/W2107127921","https://openalex.org/W2574528486","https://openalex.org/W2128046947","https://openalex.org/W1972108315","https://openalex.org/W2032576606","https://openalex.org/W3045029306"],"abstract_inverted_index":{"Motivation:":[0],"Most":[1],"current":[2],"de":[3,65,202],"novo":[4,66,203],"structure":[5,68,205],"prediction":[6,115,135,206],"methods":[7],"randomly":[8],"sample":[9],"protein":[10,67,149,159,204],"conformations":[11],"and":[12,62,100,152,177,207,211],"thus":[13],"require":[14],"large":[15],"amounts":[16],"of":[17,55,64,102,130,146,156,170,201],"computational":[18,199],"resource.":[19],"Here,":[20],"we":[21,94],"consider":[22],"a":[23,46,106,110,138,189],"sequential":[24,74,107,134,175,190],"sampling":[25],"strategy,":[26],"building":[27],"on":[28],"ideas":[29],"from":[30,53],"recent":[31],"experimental":[32],"work":[33],"which":[34,50],"shows":[35],"that":[36,72,188],"many":[37],"proteins":[38],"fold":[39],"cotranslationally.":[40],"Results:":[41],"We":[42,70],"have":[43,83],"investigated":[44],"whether":[45],"pseudo-greedy":[47],"search":[48,191],"approach,":[49],"begins":[51],"sequentially":[52],"one":[54],"the":[56,60,97,128,131,174,182],"termini,":[57],"can":[58,193],"improve":[59,208],"performance":[61],"accuracy":[63],"prediction.":[69,125],"observed":[71],"our":[73,91],"approach":[75],"converges":[76],"when":[77],"fewer":[78,86],"than":[79,87,123],"20":[80],"000":[81],"decoys":[82],"been":[84],"produced,":[85],"commonly":[88],"expected.":[89],"Using":[90],"software,":[92],"SAINT2,":[93],"also":[95],"compared":[96],"run":[98],"time":[99,200],"quality":[101,129],"models":[103,162],"produced":[104,142,167],"in":[105],"fashion":[108],"against":[109],"standard,":[111],"non-sequential":[112,124,183],"approach.":[113],"Sequential":[114],"produces":[116],"an":[117],"individual":[118],"decoy":[119],"1.5-2.5":[120],"times":[121],"faster":[122],"When":[126],"considering":[127],"best":[132],"model,":[133],"led":[136],"to":[137,196],"better":[139],"model":[140],"being":[141],"for":[143,153,168,178,216,223],"31":[144],"out":[145,155],"41":[147],"soluble":[148],"validation":[150],"cases":[151,172],"18":[154],"24":[157],"transmembrane":[158],"cases.":[160],"Correct":[161],"(TM-Score":[163],">":[164],"0.5)":[165],"were":[166],"29":[169],"these":[171],"by":[173,181],"mode":[176],"only":[179],"22":[180],"mode.":[184],"Our":[185],"comparison":[186],"reveals":[187],"strategy":[192],"be":[194],"used":[195],"drastically":[197],"reduce":[198],"accuracy.":[209],"Availability":[210],"implementation:":[212],"Data":[213],"are":[214,233],"available":[215,222,234],"download":[217,224],"from:":[218,225],"http://opig.stats.ox.ac.uk/resources.":[219],"SAINT2":[220],"is":[221],"https://github.com/sauloho/SAINT2.":[226],"Contact:":[227],"saulo.deoliveira@dtc.ox.ac.uk.":[228],"Supplementary":[229,231],"information:":[230],"data":[232],"at":[235],"Bioinformatics":[236],"online.":[237]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":3}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2017-11-17T00:00:00"}
