{"id":"https://openalex.org/W2766651423","doi":"https://doi.org/10.1093/bioinformatics/btx704","title":"BEAM web server: a tool for structural RNA motif discovery","display_name":"BEAM web server: a tool for structural RNA motif discovery","publication_year":2017,"publication_date":"2017-10-30","ids":{"openalex":"https://openalex.org/W2766651423","doi":"https://doi.org/10.1093/bioinformatics/btx704","mag":"2766651423","pmid":"https://pubmed.ncbi.nlm.nih.gov/29095974"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btx704","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx704","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/6/1058/25119221/btx704.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/6/1058/25119221/btx704.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088159319","display_name":"Marco Pietrosanto","orcid":"https://orcid.org/0000-0001-5129-6065"},"institutions":[{"id":"https://openalex.org/I116067653","display_name":"University of Rome Tor Vergata","ror":"https://ror.org/02p77k626","country_code":"IT","type":"education","lineage":["https://openalex.org/I116067653"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Marco Pietrosanto","raw_affiliation_strings":["Centre for Molecular Bioinformatics, Department of Biology, University of Rome Tor Vergata, Rome, Italy"],"raw_orcid":"https://orcid.org/0000-0001-5129-6065","affiliations":[{"raw_affiliation_string":"Centre for Molecular Bioinformatics, Department of Biology, University of Rome Tor Vergata, Rome, Italy","institution_ids":["https://openalex.org/I116067653"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084059283","display_name":"Marta Adinolfi","orcid":"https://orcid.org/0000-0003-3910-0271"},"institutions":[{"id":"https://openalex.org/I116067653","display_name":"University of Rome Tor Vergata","ror":"https://ror.org/02p77k626","country_code":"IT","type":"education","lineage":["https://openalex.org/I116067653"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marta Adinolfi","raw_affiliation_strings":["Centre for Molecular Bioinformatics, Department of Biology, University of Rome Tor Vergata, Rome, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Molecular Bioinformatics, Department of Biology, University of Rome Tor Vergata, Rome, Italy","institution_ids":["https://openalex.org/I116067653"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068986265","display_name":"Riccardo Casula","orcid":"https://orcid.org/0000-0003-4351-2906"},"institutions":[{"id":"https://openalex.org/I116067653","display_name":"University of Rome Tor Vergata","ror":"https://ror.org/02p77k626","country_code":"IT","type":"education","lineage":["https://openalex.org/I116067653"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Riccardo Casula","raw_affiliation_strings":["Centre for Molecular Bioinformatics, Department of Biology, University of Rome Tor Vergata, Rome, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Molecular Bioinformatics, Department of Biology, University of Rome Tor Vergata, Rome, Italy","institution_ids":["https://openalex.org/I116067653"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058613175","display_name":"Gabriele Ausiello","orcid":"https://orcid.org/0000-0002-8075-5774"},"institutions":[{"id":"https://openalex.org/I116067653","display_name":"University of Rome Tor Vergata","ror":"https://ror.org/02p77k626","country_code":"IT","type":"education","lineage":["https://openalex.org/I116067653"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Gabriele Ausiello","raw_affiliation_strings":["Centre for Molecular Bioinformatics, Department of Biology, University of Rome Tor Vergata, Rome, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Molecular Bioinformatics, Department of Biology, University of Rome Tor Vergata, Rome, Italy","institution_ids":["https://openalex.org/I116067653"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044866381","display_name":"Fabrizio Ferr\u00e8","orcid":"https://orcid.org/0000-0003-2768-5305"},"institutions":[{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Fabrizio Ferr\u00e8","raw_affiliation_strings":["Department of Pharmacy and Biotechnology, University of Bologna Alma Mater, Bologna, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmacy and Biotechnology, University of Bologna Alma Mater, Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089562631","display_name":"Manuela Helmer\u2010Citterich","orcid":"https://orcid.org/0000-0001-9530-7504"},"institutions":[{"id":"https://openalex.org/I116067653","display_name":"University of Rome Tor Vergata","ror":"https://ror.org/02p77k626","country_code":"IT","type":"education","lineage":["https://openalex.org/I116067653"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Manuela Helmer-Citterich","raw_affiliation_strings":["Centre for Molecular Bioinformatics, Department of Biology, University of Rome Tor Vergata, Rome, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Molecular Bioinformatics, Department of Biology, University of Rome Tor Vergata, Rome, Italy","institution_ids":["https://openalex.org/I116067653"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5088159319"],"corresponding_institution_ids":["https://openalex.org/I116067653"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.2243,"has_fulltext":false,"cited_by_count":15,"citation_normalized_percentile":{"value":0.57363213,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"34","issue":"6","first_page":"1058","last_page":"1060"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9660999774932861,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9660999774932861,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.008200000040233135,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.006000000052154064,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/motif","display_name":"Motif (music)","score":0.6828633546829224},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5764656066894531},{"id":"https://openalex.org/keywords/structural-motif","display_name":"Structural motif","score":0.5681027173995972},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5538877844810486},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5460125207901001},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.48651450872421265},{"id":"https://openalex.org/keywords/sequence-motif","display_name":"Sequence motif","score":0.4726608991622925},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.43952181935310364},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3049014210700989},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.25234538316726685},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2183988392353058},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.21252253651618958},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.16630682349205017},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.07776466012001038},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0767328143119812}],"concepts":[{"id":"https://openalex.org/C32276052","wikidata":"https://www.wikidata.org/wiki/Q908349","display_name":"Motif (music)","level":2,"score":0.6828633546829224},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5764656066894531},{"id":"https://openalex.org/C132677234","wikidata":"https://www.wikidata.org/wiki/Q3273544","display_name":"Structural motif","level":2,"score":0.5681027173995972},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5538877844810486},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5460125207901001},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.48651450872421265},{"id":"https://openalex.org/C117745874","wikidata":"https://www.wikidata.org/wiki/Q901612","display_name":"Sequence motif","level":3,"score":0.4726608991622925},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.43952181935310364},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3049014210700989},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.25234538316726685},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2183988392353058},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.21252253651618958},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.16630682349205017},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.07776466012001038},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0767328143119812},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059372","descriptor_name":"Nucleotide Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059372","descriptor_name":"Nucleotide Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059372","descriptor_name":"Nucleotide Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btx704","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx704","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/6/1058/25119221/btx704.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29095974","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29095974","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:art.torvergata.it:2108/203280","is_oa":true,"landing_page_url":"https://hdl.handle.net/2108/203280","pdf_url":null,"source":{"id":"https://openalex.org/S4306400993","display_name":"Cineca Institutional Research Information System (Tor Vergata University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I116067653","host_organization_name":"University of Rome Tor Vergata","host_organization_lineage":["https://openalex.org/I116067653"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:cris.unibo.it:11585/615394","is_oa":false,"landing_page_url":"http://hdl.handle.net/11585/615394","pdf_url":null,"source":{"id":"https://openalex.org/S4306402579","display_name":"Archivio istituzionale della ricerca (Alma Mater Studiorum Universit\u00e0 di Bologna)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210117483","host_organization_name":"Istituto di Ematologia di Bologna","host_organization_lineage":["https://openalex.org/I4210117483"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"1.01 Articolo in rivista"},{"id":"pmh:oai:europepmc.org:4775841","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5860439","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btx704","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx704","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/6/1058/25119221/btx704.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2766651423.pdf","grobid_xml":"https://content.openalex.org/works/W2766651423.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W1691812142","https://openalex.org/W2042936984","https://openalex.org/W2060994023","https://openalex.org/W2071717527","https://openalex.org/W2094204895","https://openalex.org/W2098571862","https://openalex.org/W2136430672","https://openalex.org/W2143407915","https://openalex.org/W2146716393","https://openalex.org/W2146940435","https://openalex.org/W2154241726","https://openalex.org/W2158266834","https://openalex.org/W2170226759","https://openalex.org/W2173315042","https://openalex.org/W2203521782","https://openalex.org/W2280931800","https://openalex.org/W2336017145","https://openalex.org/W2518104501","https://openalex.org/W2594713513"],"related_works":["https://openalex.org/W2073661767","https://openalex.org/W2380185347","https://openalex.org/W2368410102","https://openalex.org/W2044328609","https://openalex.org/W2370034659","https://openalex.org/W3021477453","https://openalex.org/W2012993128","https://openalex.org/W3113308218","https://openalex.org/W2159636084","https://openalex.org/W2610941444"],"abstract_inverted_index":{"Motivation:":[0],"RNA":[1,26,44,78,82,106,157,201],"structural":[2],"motif":[3,49],"finding":[4],"is":[5,32,53,95,211,218],"a":[6,48,88,110,122,161],"relevant":[7],"problem":[8],"that":[9,52,103],"becomes":[10],"computationally":[11],"hard":[12],"when":[13],"working":[14],"on":[15],"high-throughput":[16],"data":[17,148,234],"(e.g.":[18],"eCLIP,":[19],"PAR-CLIP),":[20],"often":[21],"represented":[22],"by":[23,56,150],"thousands":[24,42,76],"of":[25,41,43,75,77,90,112,125,134,136,156,180,187],"molecules.":[27],"Currently,":[28],"the":[29,33,57,100,117,131,164,178,185,200],"BEAM":[30,68,94,114,140],"server":[31,142,169,210],"only":[34,54],"web":[35,141,209],"tool":[36],"capable":[37],"to":[38,87,99,146],"handle":[39],"tens":[40,74],"in":[45,109,121,199,220],"input":[46],"with":[47,177,224],"discovery":[50],"procedure":[51],"limited":[55],"current":[58],"secondary":[59,83,107,126,181],"structure":[60,84,108,127,182],"prediction":[61],"accuracies.":[62],"Results:":[63],"The":[64,139,168,208],"recently":[65],"developed":[66],"method":[67],"(BEAr":[69],"Motifs":[70],"finder)":[71],"can":[72],"analyze":[73],"molecules":[79,202],"and":[80,154,173,194,206,216,222],"identify":[81],"motifs":[85,183],"associated":[86],"measure":[89],"their":[91],"statistical":[92],"significance.":[93],"extremely":[96],"fast":[97],"thanks":[98],"BEAR":[101],"encoding":[102,155],"transforms":[104],"each":[105,188],"string":[111],"characters.":[113],"also":[115],"exploits":[116],"evolutionary":[118],"knowledge":[119],"contained":[120],"substitution":[123],"matrix":[124],"elements,":[128],"extracted":[129],"from":[130],"RFAM":[132],"database":[133],"families":[135],"homologous":[137],"RNAs.":[138],"has":[143],"been":[144],"designed":[145],"streamline":[147],"pre-processing":[149],"automatically":[151],"handling":[152],"folding":[153,166],"sequences,":[158],"giving":[159],"users":[160],"choice":[162],"for":[163],"preferred":[165],"program.":[167],"provides":[170],"an":[171],"intuitive":[172],"informative":[174],"results":[175],"page":[176],"list":[179],"identified,":[184],"logo":[186],"motif,":[189],"its":[190,197],"significance,":[191],"graphic":[192],"representation":[193],"information":[195],"about":[196],"position":[198],"sharing":[203],"it.":[204],"Availability":[205],"implementation:":[207],"freely":[212],"available":[213,236],"at":[214,237],"http://beam.uniroma2.it/":[215],"it":[217],"implemented":[219],"NodeJS":[221],"Python":[223],"all":[225],"major":[226],"browsers":[227],"supported.":[228],"Contact:":[229],"marco.pietrosanto@uniroma2.it.":[230],"Supplementary":[231,233],"information:":[232],"are":[235],"Bioinformatics":[238],"online.":[239]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":4},{"year":2019,"cited_by_count":2}],"updated_date":"2026-05-15T08:27:34.491423","created_date":"2025-10-10T00:00:00"}
