{"id":"https://openalex.org/W2765485035","doi":"https://doi.org/10.1093/bioinformatics/btx681","title":"MetaCherchant: analyzing genomic context of antibiotic resistance genes in gut microbiota","display_name":"MetaCherchant: analyzing genomic context of antibiotic resistance genes in gut microbiota","publication_year":2017,"publication_date":"2017-10-27","ids":{"openalex":"https://openalex.org/W2765485035","doi":"https://doi.org/10.1093/bioinformatics/btx681","mag":"2765485035","pmid":"https://pubmed.ncbi.nlm.nih.gov/29092015"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btx681","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx681","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/3/434/25117178/btx681.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/3/434/25117178/btx681.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018576573","display_name":"Evgenii I. Olekhnovich","orcid":"https://orcid.org/0000-0003-4899-342X"},"institutions":[{"id":"https://openalex.org/I64264942","display_name":"Federal Medical-Biological Agency","ror":"https://ror.org/052ay8m85","country_code":"RU","type":"government","lineage":["https://openalex.org/I64264942"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Evgenii I Olekhnovich","raw_affiliation_strings":["Federal Research and Clinical Centre of Physical and Chemical Medicine, Federal Medical and Biological Agency of Russia, Moscow, Russian Federation"],"affiliations":[{"raw_affiliation_string":"Federal Research and Clinical Centre of Physical and Chemical Medicine, Federal Medical and Biological Agency of Russia, Moscow, Russian Federation","institution_ids":["https://openalex.org/I64264942"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075496427","display_name":"Artem T. Vasilyev","orcid":"https://orcid.org/0000-0002-0021-010X"},"institutions":[{"id":"https://openalex.org/I173089394","display_name":"ITMO University","ror":"https://ror.org/04txgxn49","country_code":"RU","type":"education","lineage":["https://openalex.org/I173089394"]},{"id":"https://openalex.org/I4210144352","display_name":"State Research Center of the Russian Federation","ror":"https://ror.org/04qpssw85","country_code":"RU","type":"facility","lineage":["https://openalex.org/I4210144352"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Artem T Vasilyev","raw_affiliation_strings":["ITMO University, Saint Petersburg, Russian Federation","JetBrains Research, Russian Federation"],"affiliations":[{"raw_affiliation_string":"ITMO University, Saint Petersburg, Russian Federation","institution_ids":["https://openalex.org/I173089394"]},{"raw_affiliation_string":"JetBrains Research, Russian Federation","institution_ids":["https://openalex.org/I4210144352"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047407238","display_name":"Vladimir Ulyantsev","orcid":"https://orcid.org/0000-0003-0802-830X"},"institutions":[{"id":"https://openalex.org/I173089394","display_name":"ITMO University","ror":"https://ror.org/04txgxn49","country_code":"RU","type":"education","lineage":["https://openalex.org/I173089394"]}],"countries":["RU"],"is_corresponding":true,"raw_author_name":"Vladimir I Ulyantsev","raw_affiliation_strings":["ITMO University, Saint Petersburg, Russian Federation"],"affiliations":[{"raw_affiliation_string":"ITMO University, Saint Petersburg, Russian Federation","institution_ids":["https://openalex.org/I173089394"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091795786","display_name":"Elena Kostryukova","orcid":"https://orcid.org/0000-0002-0457-6803"},"institutions":[{"id":"https://openalex.org/I64264942","display_name":"Federal Medical-Biological Agency","ror":"https://ror.org/052ay8m85","country_code":"RU","type":"government","lineage":["https://openalex.org/I64264942"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Elena S Kostryukova","raw_affiliation_strings":["Federal Research and Clinical Centre of Physical and Chemical Medicine, Federal Medical and Biological Agency of Russia, Moscow, Russian Federation"],"affiliations":[{"raw_affiliation_string":"Federal Research and Clinical Centre of Physical and Chemical Medicine, Federal Medical and Biological Agency of Russia, Moscow, Russian Federation","institution_ids":["https://openalex.org/I64264942"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000996948","display_name":"Alexander Tyakht","orcid":"https://orcid.org/0000-0002-7358-2537"},"institutions":[{"id":"https://openalex.org/I173089394","display_name":"ITMO University","ror":"https://ror.org/04txgxn49","country_code":"RU","type":"education","lineage":["https://openalex.org/I173089394"]},{"id":"https://openalex.org/I64264942","display_name":"Federal Medical-Biological Agency","ror":"https://ror.org/052ay8m85","country_code":"RU","type":"government","lineage":["https://openalex.org/I64264942"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Alexander V Tyakht","raw_affiliation_strings":["Federal Research and Clinical Centre of Physical and Chemical Medicine, Federal Medical and Biological Agency of Russia, Moscow, Russian Federation","ITMO University, Saint Petersburg, Russian Federation"],"affiliations":[{"raw_affiliation_string":"Federal Research and Clinical Centre of Physical and Chemical Medicine, Federal Medical and Biological Agency of Russia, Moscow, Russian Federation","institution_ids":["https://openalex.org/I64264942"]},{"raw_affiliation_string":"ITMO University, Saint Petersburg, Russian Federation","institution_ids":["https://openalex.org/I173089394"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5047407238"],"corresponding_institution_ids":["https://openalex.org/I173089394"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.791,"has_fulltext":false,"cited_by_count":46,"citation_normalized_percentile":{"value":0.8547202,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"34","issue":"3","first_page":"434","last_page":"444"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10147","display_name":"Antibiotic Resistance in Bacteria","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1313","display_name":"Molecular Medicine"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11316","display_name":"Mycobacterium research and diagnosis","score":0.9890999794006348,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.8788019418716431},{"id":"https://openalex.org/keywords/mobile-genetic-elements","display_name":"Mobile genetic elements","score":0.6783121824264526},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6692259311676025},{"id":"https://openalex.org/keywords/resistome","display_name":"Resistome","score":0.6283198595046997},{"id":"https://openalex.org/keywords/antibiotic-resistance","display_name":"Antibiotic resistance","score":0.6201232075691223},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5719937682151794},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5595356822013855},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5593993663787842},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4703747630119324},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.46327611804008484},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.45723873376846313},{"id":"https://openalex.org/keywords/horizontal-gene-transfer","display_name":"Horizontal gene transfer","score":0.4538699984550476},{"id":"https://openalex.org/keywords/antibiotics","display_name":"Antibiotics","score":0.2362392544746399}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.8788019418716431},{"id":"https://openalex.org/C132533263","wikidata":"https://www.wikidata.org/wiki/Q2347362","display_name":"Mobile genetic elements","level":4,"score":0.6783121824264526},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6692259311676025},{"id":"https://openalex.org/C2776666601","wikidata":"https://www.wikidata.org/wiki/Q3457855","display_name":"Resistome","level":5,"score":0.6283198595046997},{"id":"https://openalex.org/C94665300","wikidata":"https://www.wikidata.org/wiki/Q63391344","display_name":"Antibiotic resistance","level":3,"score":0.6201232075691223},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5719937682151794},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5595356822013855},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5593993663787842},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4703747630119324},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.46327611804008484},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.45723873376846313},{"id":"https://openalex.org/C92938381","wikidata":"https://www.wikidata.org/wiki/Q83185","display_name":"Horizontal gene transfer","level":4,"score":0.4538699984550476},{"id":"https://openalex.org/C501593827","wikidata":"https://www.wikidata.org/wiki/Q12187","display_name":"Antibiotics","level":2,"score":0.2362392544746399},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D024881","descriptor_name":"Drug Resistance, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D024881","descriptor_name":"Drug Resistance, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D024881","descriptor_name":"Drug Resistance, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btx681","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx681","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/3/434/25117178/btx681.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29092015","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29092015","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btx681","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx681","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/3/434/25117178/btx681.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2765485035.pdf","grobid_xml":"https://content.openalex.org/works/W2765485035.grobid-xml"},"referenced_works_count":46,"referenced_works":["https://openalex.org/W1568043102","https://openalex.org/W1703384511","https://openalex.org/W1828084056","https://openalex.org/W1982073117","https://openalex.org/W1983042430","https://openalex.org/W1997509815","https://openalex.org/W2004594378","https://openalex.org/W2004727687","https://openalex.org/W2010002522","https://openalex.org/W2030928347","https://openalex.org/W2031893281","https://openalex.org/W2033002674","https://openalex.org/W2043679479","https://openalex.org/W2045204781","https://openalex.org/W2046501778","https://openalex.org/W2060651942","https://openalex.org/W2103441770","https://openalex.org/W2105580456","https://openalex.org/W2109848222","https://openalex.org/W2113528899","https://openalex.org/W2113679889","https://openalex.org/W2116895571","https://openalex.org/W2120902911","https://openalex.org/W2129933858","https://openalex.org/W2147581876","https://openalex.org/W2151450070","https://openalex.org/W2153325555","https://openalex.org/W2154281682","https://openalex.org/W2157539385","https://openalex.org/W2159954944","https://openalex.org/W2170551349","https://openalex.org/W2254734290","https://openalex.org/W2265709988","https://openalex.org/W2274020214","https://openalex.org/W2307206101","https://openalex.org/W2339602899","https://openalex.org/W2380447136","https://openalex.org/W2415963323","https://openalex.org/W2530420630","https://openalex.org/W2544493586","https://openalex.org/W2557776122","https://openalex.org/W2573498001","https://openalex.org/W2581361205","https://openalex.org/W2599417231","https://openalex.org/W2610010097","https://openalex.org/W2951209840"],"related_works":["https://openalex.org/W2325934813","https://openalex.org/W3132280623","https://openalex.org/W2325330150","https://openalex.org/W2394848516","https://openalex.org/W3039769284","https://openalex.org/W2806408903","https://openalex.org/W2583301494","https://openalex.org/W2529295031","https://openalex.org/W4290019502","https://openalex.org/W4361197586"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":6}],"updated_date":"2026-03-29T08:15:47.926485","created_date":"2025-10-10T00:00:00"}
