{"id":"https://openalex.org/W2952744897","doi":"https://doi.org/10.1093/bioinformatics/btx664","title":"Identification of copy number variations and translocations in cancer cells from Hi-C data","display_name":"Identification of copy number variations and translocations in cancer cells from Hi-C data","publication_year":2017,"publication_date":"2017-10-17","ids":{"openalex":"https://openalex.org/W2952744897","doi":"https://doi.org/10.1093/bioinformatics/btx664","mag":"2952744897","pmid":"https://pubmed.ncbi.nlm.nih.gov/29048467"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btx664","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx664","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/2/338/25114346/btx664.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/2/338/25114346/btx664.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053398622","display_name":"Abhijit Chakraborty","orcid":"https://orcid.org/0000-0002-1500-3699"},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Abhijit Chakraborty","raw_affiliation_strings":["Division of Vaccine Discovery, La Jolla Institute for Allergy and Immunology, La Jolla, CA, USA"],"affiliations":[{"raw_affiliation_string":"Division of Vaccine Discovery, La Jolla Institute for Allergy and Immunology, La Jolla, CA, USA","institution_ids":["https://openalex.org/I1311191458"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036380790","display_name":"Ferhat Ay","orcid":"https://orcid.org/0000-0002-0708-6914"},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]},{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ferhat Ay","raw_affiliation_strings":["Division of Vaccine Discovery, La Jolla Institute for Allergy and Immunology, La Jolla, CA, USA","School of Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, CA, USA"],"affiliations":[{"raw_affiliation_string":"Division of Vaccine Discovery, La Jolla Institute for Allergy and Immunology, La Jolla, CA, USA","institution_ids":["https://openalex.org/I1311191458"]},{"raw_affiliation_string":"School of Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, CA, USA","institution_ids":["https://openalex.org/I36258959"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5036380790"],"corresponding_institution_ids":["https://openalex.org/I1311191458","https://openalex.org/I36258959"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":7.9226,"has_fulltext":true,"cited_by_count":103,"citation_normalized_percentile":{"value":0.97529186,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"34","issue":"2","first_page":"338","last_page":"345"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chromatin","display_name":"Chromatin","score":0.7500756978988647},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6297032237052917},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.608278214931488},{"id":"https://openalex.org/keywords/chromosome-conformation-capture","display_name":"Chromosome conformation capture","score":0.6047946810722351},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5619093775749207},{"id":"https://openalex.org/keywords/chromothripsis","display_name":"Chromothripsis","score":0.5504027605056763},{"id":"https://openalex.org/keywords/chromosomal-translocation","display_name":"Chromosomal translocation","score":0.5119174718856812},{"id":"https://openalex.org/keywords/chromosome","display_name":"Chromosome","score":0.4766966998577118},{"id":"https://openalex.org/keywords/chromosomal-rearrangement","display_name":"Chromosomal rearrangement","score":0.4661506414413452},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.45555198192596436},{"id":"https://openalex.org/keywords/epigenetics","display_name":"Epigenetics","score":0.4119933545589447},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.34252214431762695},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.33417999744415283},{"id":"https://openalex.org/keywords/karyotype","display_name":"Karyotype","score":0.21818044781684875},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.16301468014717102},{"id":"https://openalex.org/keywords/genome-instability","display_name":"Genome instability","score":0.13661861419677734},{"id":"https://openalex.org/keywords/enhancer","display_name":"Enhancer","score":0.08446094393730164}],"concepts":[{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.7500756978988647},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6297032237052917},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.608278214931488},{"id":"https://openalex.org/C93946551","wikidata":"https://www.wikidata.org/wiki/Q5113914","display_name":"Chromosome conformation capture","level":5,"score":0.6047946810722351},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5619093775749207},{"id":"https://openalex.org/C99983632","wikidata":"https://www.wikidata.org/wiki/Q1087765","display_name":"Chromothripsis","level":5,"score":0.5504027605056763},{"id":"https://openalex.org/C138626823","wikidata":"https://www.wikidata.org/wiki/Q916504","display_name":"Chromosomal translocation","level":3,"score":0.5119174718856812},{"id":"https://openalex.org/C30481170","wikidata":"https://www.wikidata.org/wiki/Q37748","display_name":"Chromosome","level":3,"score":0.4766966998577118},{"id":"https://openalex.org/C86546924","wikidata":"https://www.wikidata.org/wiki/Q3454460","display_name":"Chromosomal rearrangement","level":5,"score":0.4661506414413452},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.45555198192596436},{"id":"https://openalex.org/C41091548","wikidata":"https://www.wikidata.org/wiki/Q26939","display_name":"Epigenetics","level":3,"score":0.4119933545589447},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.34252214431762695},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.33417999744415283},{"id":"https://openalex.org/C53226629","wikidata":"https://www.wikidata.org/wiki/Q189967","display_name":"Karyotype","level":4,"score":0.21818044781684875},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.16301468014717102},{"id":"https://openalex.org/C178169997","wikidata":"https://www.wikidata.org/wiki/Q2892636","display_name":"Genome instability","level":4,"score":0.13661861419677734},{"id":"https://openalex.org/C111936080","wikidata":"https://www.wikidata.org/wiki/Q913367","display_name":"Enhancer","level":4,"score":0.08446094393730164},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C143425029","wikidata":"https://www.wikidata.org/wiki/Q5205747","display_name":"DNA damage","level":3,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btx664","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx664","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/2/338/25114346/btx664.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29048467","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29048467","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8210825","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8210825","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btx664","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx664","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/2/338/25114346/btx664.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.47999998927116394,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2952744897.pdf","grobid_xml":"https://content.openalex.org/works/W2952744897.grobid-xml"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W1793984240","https://openalex.org/W1859117663","https://openalex.org/W1969991150","https://openalex.org/W1973062929","https://openalex.org/W1977308882","https://openalex.org/W1978902427","https://openalex.org/W1998593414","https://openalex.org/W2001962665","https://openalex.org/W2016661249","https://openalex.org/W2027849227","https://openalex.org/W2037479635","https://openalex.org/W2045066046","https://openalex.org/W2059963348","https://openalex.org/W2064537118","https://openalex.org/W2064727535","https://openalex.org/W2065006553","https://openalex.org/W2070021921","https://openalex.org/W2071043671","https://openalex.org/W2075206831","https://openalex.org/W2082534286","https://openalex.org/W2089798080","https://openalex.org/W2090037139","https://openalex.org/W2097798909","https://openalex.org/W2097920585","https://openalex.org/W2101546138","https://openalex.org/W2105778988","https://openalex.org/W2111997778","https://openalex.org/W2128940246","https://openalex.org/W2129359631","https://openalex.org/W2132882607","https://openalex.org/W2133174470","https://openalex.org/W2142270559","https://openalex.org/W2153120294","https://openalex.org/W2156988725","https://openalex.org/W2162536970","https://openalex.org/W2185693210","https://openalex.org/W2186736915","https://openalex.org/W2259938310","https://openalex.org/W2264578395","https://openalex.org/W2267070684","https://openalex.org/W2396556285","https://openalex.org/W2553052372","https://openalex.org/W2553838260","https://openalex.org/W2593509139","https://openalex.org/W2597274540","https://openalex.org/W2729264945","https://openalex.org/W6686869349","https://openalex.org/W6711754919"],"related_works":["https://openalex.org/W3195254751","https://openalex.org/W3116849561","https://openalex.org/W2136004413","https://openalex.org/W2032674288","https://openalex.org/W3180808842","https://openalex.org/W2111997778","https://openalex.org/W2793253652","https://openalex.org/W2898514070","https://openalex.org/W2078993163","https://openalex.org/W2043314233"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":17},{"year":2022,"cited_by_count":12},{"year":2021,"cited_by_count":15},{"year":2020,"cited_by_count":13},{"year":2019,"cited_by_count":14},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
