{"id":"https://openalex.org/W2763794668","doi":"https://doi.org/10.1093/bioinformatics/btx645","title":"SELANSI: a toolbox for simulation of stochastic gene regulatory networks","display_name":"SELANSI: a toolbox for simulation of stochastic gene regulatory networks","publication_year":2017,"publication_date":"2017-10-10","ids":{"openalex":"https://openalex.org/W2763794668","doi":"https://doi.org/10.1093/bioinformatics/btx645","mag":"2763794668","pmid":"https://pubmed.ncbi.nlm.nih.gov/29040384"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btx645","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx645","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/10261/187963","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070660133","display_name":"Manuel P\u00e1jaro","orcid":"https://orcid.org/0000-0001-7340-9737"},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Manuel P\u00e1jaro","raw_affiliation_strings":["BioProcess Engineering Group, IIM-CSIC, Spanish National Research Council, Vigo, Spain","BioProcess Engineering Group, IIM-CSIC, Spanish National Research Council, 36208 Vigo, Spain and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BioProcess Engineering Group, IIM-CSIC, Spanish National Research Council, Vigo, Spain","institution_ids":["https://openalex.org/I134820265"]},{"raw_affiliation_string":"BioProcess Engineering Group, IIM-CSIC, Spanish National Research Council, 36208 Vigo, Spain and","institution_ids":["https://openalex.org/I134820265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069067835","display_name":"Irene Otero\u2010Muras","orcid":"https://orcid.org/0000-0003-2895-997X"},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Irene Otero-Muras","raw_affiliation_strings":["BioProcess Engineering Group, IIM-CSIC, Spanish National Research Council, Vigo, Spain","BioProcess Engineering Group, IIM-CSIC, Spanish National Research Council, 36208 Vigo, Spain and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BioProcess Engineering Group, IIM-CSIC, Spanish National Research Council, Vigo, Spain","institution_ids":["https://openalex.org/I134820265"]},{"raw_affiliation_string":"BioProcess Engineering Group, IIM-CSIC, Spanish National Research Council, 36208 Vigo, Spain and","institution_ids":["https://openalex.org/I134820265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063346914","display_name":"Carlos V\u00e1zquez","orcid":"https://orcid.org/0000-0001-6591-2252"},"institutions":[{"id":"https://openalex.org/I11019714","display_name":"Universidade da Coru\u00f1a","ror":"https://ror.org/01qckj285","country_code":"ES","type":"education","lineage":["https://openalex.org/I11019714"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Carlos V\u00e1zquez","raw_affiliation_strings":["Department of Mathematics, University of A Coru\u00f1a Campus Elvi\u00f1a s/n, A Coru\u00f1a, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, University of A Coru\u00f1a Campus Elvi\u00f1a s/n, A Coru\u00f1a, Spain","institution_ids":["https://openalex.org/I11019714"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030090184","display_name":"Antonio A. Alonso","orcid":"https://orcid.org/0000-0001-8203-1799"},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Antonio A Alonso","raw_affiliation_strings":["BioProcess Engineering Group, IIM-CSIC, Spanish National Research Council, Vigo, Spain","BioProcess Engineering Group, IIM-CSIC, Spanish National Research Council, 36208 Vigo, Spain and"],"raw_orcid":"https://orcid.org/0000-0001-8203-1799","affiliations":[{"raw_affiliation_string":"BioProcess Engineering Group, IIM-CSIC, Spanish National Research Council, Vigo, Spain","institution_ids":["https://openalex.org/I134820265"]},{"raw_affiliation_string":"BioProcess Engineering Group, IIM-CSIC, Spanish National Research Council, 36208 Vigo, Spain and","institution_ids":["https://openalex.org/I134820265"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5030090184"],"corresponding_institution_ids":["https://openalex.org/I134820265"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.7091,"has_fulltext":false,"cited_by_count":22,"citation_normalized_percentile":{"value":0.68954577,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"34","issue":"5","first_page":"893","last_page":"895"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10928","display_name":"Probabilistic and Robust Engineering Design","score":0.00019999999494757503,"subfield":{"id":"https://openalex.org/subfields/1804","display_name":"Statistics, Probability and Uncertainty"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11513","display_name":"stochastic dynamics and bifurcation","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.7615765333175659},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6988989114761353},{"id":"https://openalex.org/keywords/toolbox","display_name":"Toolbox","score":0.6987720727920532},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.6659106016159058},{"id":"https://openalex.org/keywords/stochastic-simulation","display_name":"Stochastic simulation","score":0.5805808305740356},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5100546479225159},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.48364317417144775},{"id":"https://openalex.org/keywords/stochastic-process","display_name":"Stochastic process","score":0.44374001026153564},{"id":"https://openalex.org/keywords/synthetic-biology","display_name":"Synthetic biology","score":0.43636494874954224},{"id":"https://openalex.org/keywords/stochastic-differential-equation","display_name":"Stochastic differential equation","score":0.42404162883758545},{"id":"https://openalex.org/keywords/stochastic-modelling","display_name":"Stochastic modelling","score":0.4191458821296692},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.3893944025039673},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2082011103630066},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.18663573265075684},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.17996785044670105},{"id":"https://openalex.org/keywords/applied-mathematics","display_name":"Applied mathematics","score":0.1303865909576416},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13020795583724976}],"concepts":[{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.7615765333175659},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6988989114761353},{"id":"https://openalex.org/C2777655017","wikidata":"https://www.wikidata.org/wiki/Q1501161","display_name":"Toolbox","level":2,"score":0.6987720727920532},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.6659106016159058},{"id":"https://openalex.org/C25915931","wikidata":"https://www.wikidata.org/wiki/Q4180825","display_name":"Stochastic simulation","level":2,"score":0.5805808305740356},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5100546479225159},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.48364317417144775},{"id":"https://openalex.org/C8272713","wikidata":"https://www.wikidata.org/wiki/Q176737","display_name":"Stochastic process","level":2,"score":0.44374001026153564},{"id":"https://openalex.org/C191908910","wikidata":"https://www.wikidata.org/wiki/Q862838","display_name":"Synthetic biology","level":2,"score":0.43636494874954224},{"id":"https://openalex.org/C51955184","wikidata":"https://www.wikidata.org/wiki/Q1545585","display_name":"Stochastic differential equation","level":2,"score":0.42404162883758545},{"id":"https://openalex.org/C127491075","wikidata":"https://www.wikidata.org/wiki/Q7617825","display_name":"Stochastic modelling","level":2,"score":0.4191458821296692},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.3893944025039673},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2082011103630066},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.18663573265075684},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.17996785044670105},{"id":"https://openalex.org/C28826006","wikidata":"https://www.wikidata.org/wiki/Q33521","display_name":"Applied mathematics","level":1,"score":0.1303865909576416},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13020795583724976},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btx645","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx645","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29040384","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29040384","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:4991225","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6030881","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:digital.csic.es:10261/187963","is_oa":true,"landing_page_url":"http://hdl.handle.net/10261/187963","pdf_url":null,"source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"http://purl.org/coar/resource_type/c_6501"},{"id":"pmh:oai:ruc.udc.es:2183/37704","is_oa":true,"landing_page_url":"http://hdl.handle.net/2183/37704","pdf_url":null,"source":{"id":"https://openalex.org/S4306402204","display_name":"RUC (Universidade Da Coru\u00f1a)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I11019714","host_organization_name":"Universidade da Coru\u00f1a","host_organization_lineage":["https://openalex.org/I11019714"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"pmh:oai:digital.csic.es:10261/187963","is_oa":true,"landing_page_url":"http://hdl.handle.net/10261/187963","pdf_url":null,"source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"http://purl.org/coar/resource_type/c_6501"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.4300000071525574}],"awards":[{"id":"https://openalex.org/G3860371326","display_name":null,"funder_award_id":"AGL2015-67504-C3-2-R","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G4663110651","display_name":null,"funder_award_id":"C3\u20132-R","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"}],"funders":[{"id":"https://openalex.org/F4320321837","display_name":"Ministerio de Econom\u00eda y Competitividad","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W1900297062","https://openalex.org/W1921421686","https://openalex.org/W2065219357","https://openalex.org/W2071747231","https://openalex.org/W2080252570","https://openalex.org/W2102653059","https://openalex.org/W2115368299","https://openalex.org/W2127660420","https://openalex.org/W2127740987","https://openalex.org/W2162556737","https://openalex.org/W2167154952","https://openalex.org/W2171750046","https://openalex.org/W2265281604","https://openalex.org/W2598638843","https://openalex.org/W3103757230"],"related_works":["https://openalex.org/W2057769265","https://openalex.org/W2338895903","https://openalex.org/W2024161258","https://openalex.org/W1911418903","https://openalex.org/W3044523069","https://openalex.org/W2126646394","https://openalex.org/W2211443823","https://openalex.org/W1982249722","https://openalex.org/W3144585500","https://openalex.org/W4211049090"],"abstract_inverted_index":{"Motivation:":[0],"Gene":[1],"regulation":[2],"is":[3,50,117,154,189],"inherently":[4],"stochastic.":[5],"In":[6],"many":[7],"applications":[8],"concerning":[9],"Systems":[10],"and":[11,19,135,172,180,188],"Synthetic":[12],"Biology":[13],"such":[14],"as":[15,174,176],"the":[16,20,37,60,85,105,149,152,185],"reverse":[17],"engineering":[18],"de":[21],"novo":[22],"design":[23],"of":[24,41,54,59,63,79,87,98,151,161],"genetic":[25],"circuits,":[26],"stochastic":[27,42,61,88],"effects":[28],"(yet":[29],"potentially":[30],"crucial)":[31],"are":[32],"often":[33],"neglected":[34],"due":[35],"to":[36,102,157],"high":[38,124],"computational":[39,70],"cost":[40],"simulations.":[43],"With":[44],"advances":[45],"in":[46,138],"these":[47],"fields":[48],"there":[49],"an":[51],"increasing":[52],"need":[53],"tools":[55],"providing":[56],"accurate":[57],"approximations":[58],"dynamics":[62],"gene":[64,90,99],"regulatory":[65,91,100],"networks":[66,101],"(GRNs)":[67],"with":[68,110,123,133],"reduced":[69],"effort.":[71],"Results:":[72],"This":[73],"work":[74],"presents":[75],"SELANSI":[76,93,182],"(SEmi-LAgrangian":[77],"SImulation":[78],"GRNs),":[80],"a":[81,111,120,158],"software":[82],"toolbox":[83],"for":[84],"simulation":[86,177],"multidimensional":[89],"networks.":[92],"exploits":[94],"intrinsic":[95],"structural":[96],"properties":[97],"accurately":[103],"approximate":[104],"corresponding":[106],"Chemical":[107],"Master":[108],"Equation":[109],"partial":[112],"integral":[113],"differential":[114],"equation":[115],"that":[116],"solved":[118],"by":[119,144],"semi-lagrangian":[121],"method":[122,153],"efficiency.":[125],"Networks":[126],"under":[127,184,191],"consideration":[128],"might":[129],"involve":[130],"multiple":[131],"genes":[132,140],"self":[134],"cross":[136],"regulations,":[137],"which":[139],"can":[141],"be":[142],"regulated":[143],"different":[145],"transcription":[146],"factors.":[147],"Moreover,":[148],"validity":[150],"not":[155],"restricted":[156],"particular":[159],"type":[160],"kinetics.":[162],"The":[163],"tool":[164],"offers":[165],"total":[166],"flexibility":[167],"regarding":[168],"network":[169],"topology,":[170],"kinetics":[171],"parameterization,":[173],"well":[175],"options.":[178],"Availability":[179],"implementation:":[181],"runs":[183],"MATLAB":[186],"environment,":[187],"available":[190],"GPLv3":[192],"license":[193],"at":[194],"https://sites.google.com/view/selansi.":[195],"Contact:":[196],"antonio@iim.csic.es.":[197]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":4}],"updated_date":"2026-08-13T07:04:57.449891","created_date":"2025-10-10T00:00:00"}
