{"id":"https://openalex.org/W2757425689","doi":"https://doi.org/10.1093/bioinformatics/btx606","title":"CCmiR: a computational approach for competitive and cooperative microRNA binding prediction","display_name":"CCmiR: a computational approach for competitive and cooperative microRNA binding prediction","publication_year":2017,"publication_date":"2017-09-22","ids":{"openalex":"https://openalex.org/W2757425689","doi":"https://doi.org/10.1093/bioinformatics/btx606","mag":"2757425689","pmid":"https://pubmed.ncbi.nlm.nih.gov/29028895"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btx606","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx606","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/2/198/25114310/btx606.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/2/198/25114310/btx606.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070127391","display_name":"Jun Ding","orcid":"https://orcid.org/0000-0001-5183-6885"},"institutions":[{"id":"https://openalex.org/I106165777","display_name":"University of Central Florida","ror":"https://ror.org/036nfer12","country_code":"US","type":"education","lineage":["https://openalex.org/I106165777"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jun Ding","raw_affiliation_strings":["Department of Computer Science, University of Central Florida, Orlando, FL, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Central Florida, Orlando, FL, USA","institution_ids":["https://openalex.org/I106165777"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100669881","display_name":"Xiaoman Li","orcid":"https://orcid.org/0000-0002-9209-458X"},"institutions":[{"id":"https://openalex.org/I106165777","display_name":"University of Central Florida","ror":"https://ror.org/036nfer12","country_code":"US","type":"education","lineage":["https://openalex.org/I106165777"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Xiaoman Li","raw_affiliation_strings":["Burnett School of Biomedical Science, University of Central Florida, Orlando, FL, USA"],"affiliations":[{"raw_affiliation_string":"Burnett School of Biomedical Science, University of Central Florida, Orlando, FL, USA","institution_ids":["https://openalex.org/I106165777"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101762276","display_name":"Haiyan Hu","orcid":"https://orcid.org/0000-0002-4580-5975"},"institutions":[{"id":"https://openalex.org/I106165777","display_name":"University of Central Florida","ror":"https://ror.org/036nfer12","country_code":"US","type":"education","lineage":["https://openalex.org/I106165777"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Haiyan Hu","raw_affiliation_strings":["Department of Computer Science, University of Central Florida, Orlando, FL, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Central Florida, Orlando, FL, USA","institution_ids":["https://openalex.org/I106165777"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5100669881","https://openalex.org/A5101762276"],"corresponding_institution_ids":["https://openalex.org/I106165777"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.4454,"has_fulltext":false,"cited_by_count":21,"citation_normalized_percentile":{"value":0.60389801,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"34","issue":"2","first_page":"198","last_page":"206"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11668","display_name":"interferon and immune responses","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6713310480117798},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6447573900222778},{"id":"https://openalex.org/keywords/competition","display_name":"Competition (biology)","score":0.5911673903465271},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.5744665861129761},{"id":"https://openalex.org/keywords/recall","display_name":"Recall","score":0.5049696564674377},{"id":"https://openalex.org/keywords/precision-and-recall","display_name":"Precision and recall","score":0.48960310220718384},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.38570496439933777},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3706012964248657},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36107057332992554},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3233913779258728},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18215814232826233},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09136885404586792},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08185181021690369},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.07575774192810059},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.06031575798988342}],"concepts":[{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6713310480117798},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6447573900222778},{"id":"https://openalex.org/C91306197","wikidata":"https://www.wikidata.org/wiki/Q45767","display_name":"Competition (biology)","level":2,"score":0.5911673903465271},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.5744665861129761},{"id":"https://openalex.org/C100660578","wikidata":"https://www.wikidata.org/wiki/Q18733","display_name":"Recall","level":2,"score":0.5049696564674377},{"id":"https://openalex.org/C81669768","wikidata":"https://www.wikidata.org/wiki/Q2359161","display_name":"Precision and recall","level":2,"score":0.48960310220718384},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.38570496439933777},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3706012964248657},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36107057332992554},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3233913779258728},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18215814232826233},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09136885404586792},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08185181021690369},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.07575774192810059},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.06031575798988342},{"id":"https://openalex.org/C180747234","wikidata":"https://www.wikidata.org/wiki/Q23373","display_name":"Cognitive psychology","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btx606","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx606","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/2/198/25114310/btx606.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29028895","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29028895","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:stars.library.ucf.edu:scopus2015-10095","is_oa":true,"landing_page_url":"https://stars.library.ucf.edu/scopus2015/9096","pdf_url":null,"source":{"id":"https://openalex.org/S4210172555","display_name":"Journal of International Crisis and Risk Communication Research","issn_l":"2576-0017","issn":["2576-0017","2576-0025"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Scopus Export 2015-2019","raw_type":"text"},{"id":"pmh:oai:europepmc.org:5304538","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5860214","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btx606","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx606","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/2/198/25114310/btx606.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.5299999713897705}],"awards":[{"id":"https://openalex.org/G3654403358","display_name":null,"funder_award_id":"1356524, 1149955, 1661414","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6309400696","display_name":null,"funder_award_id":"1356524","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6569912673","display_name":null,"funder_award_id":"R15GM123407","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2757425689.pdf","grobid_xml":"https://content.openalex.org/works/W2757425689.grobid-xml"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W14098964","https://openalex.org/W144423133","https://openalex.org/W1972508745","https://openalex.org/W1972785590","https://openalex.org/W1972989638","https://openalex.org/W1985563073","https://openalex.org/W2000676545","https://openalex.org/W2014845588","https://openalex.org/W2017358009","https://openalex.org/W2020469175","https://openalex.org/W2020656583","https://openalex.org/W2025911055","https://openalex.org/W2026570544","https://openalex.org/W2027469759","https://openalex.org/W2044043932","https://openalex.org/W2044832480","https://openalex.org/W2050869737","https://openalex.org/W2053003053","https://openalex.org/W2059073003","https://openalex.org/W2061174980","https://openalex.org/W2069759108","https://openalex.org/W2073764144","https://openalex.org/W2083381199","https://openalex.org/W2088585390","https://openalex.org/W2098044274","https://openalex.org/W2101411920","https://openalex.org/W2102874238","https://openalex.org/W2120456037","https://openalex.org/W2122661176","https://openalex.org/W2123716127","https://openalex.org/W2125838338","https://openalex.org/W2133658633","https://openalex.org/W2139406867","https://openalex.org/W2141306411","https://openalex.org/W2148180921","https://openalex.org/W2149785901","https://openalex.org/W2150395782","https://openalex.org/W2163199119","https://openalex.org/W2165909549","https://openalex.org/W2168173728","https://openalex.org/W2170446948","https://openalex.org/W2171398108","https://openalex.org/W2171629651","https://openalex.org/W2292348537","https://openalex.org/W2407848977"],"related_works":["https://openalex.org/W2737319532","https://openalex.org/W4392896533","https://openalex.org/W2062945643","https://openalex.org/W2050308539","https://openalex.org/W3151405604","https://openalex.org/W2565797512","https://openalex.org/W4241694095","https://openalex.org/W2330252996","https://openalex.org/W2358294942","https://openalex.org/W4367460280"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":3}],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2025-10-10T00:00:00"}
