{"id":"https://openalex.org/W2757936553","doi":"https://doi.org/10.1093/bioinformatics/btx601","title":"Sipros Ensemble improves database searching and filtering for complex metaproteomics","display_name":"Sipros Ensemble improves database searching and filtering for complex metaproteomics","publication_year":2017,"publication_date":"2017-09-19","ids":{"openalex":"https://openalex.org/W2757936553","doi":"https://doi.org/10.1093/bioinformatics/btx601","mag":"2757936553","pmid":"https://pubmed.ncbi.nlm.nih.gov/29028897"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btx601","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx601","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/5/795/25170640/btx601.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/5/795/25170640/btx601.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075184660","display_name":"Xuan Guo","orcid":"https://orcid.org/0000-0002-2777-4482"},"institutions":[{"id":"https://openalex.org/I123534392","display_name":"University of North Texas","ror":"https://ror.org/00v97ad02","country_code":"US","type":"education","lineage":["https://openalex.org/I123534392"]},{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]},{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xuan Guo","raw_affiliation_strings":["Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA","Department of Computer Science and Engineering, University of North Texas, Denton, TX, USA","Graduate School of Genome Science and Technology, University of Tennessee, Knoxville, TN, USA"],"affiliations":[{"raw_affiliation_string":"Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA","institution_ids":["https://openalex.org/I1289243028"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, University of North Texas, Denton, TX, USA","institution_ids":["https://openalex.org/I123534392"]},{"raw_affiliation_string":"Graduate School of Genome Science and Technology, University of Tennessee, Knoxville, TN, USA","institution_ids":["https://openalex.org/I75027704"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100452300","display_name":"Zhou Li","orcid":"https://orcid.org/0000-0002-4274-0977"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]},{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhou Li","raw_affiliation_strings":["Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA","Graduate School of Genome Science and Technology, University of Tennessee, Knoxville, TN, USA"],"affiliations":[{"raw_affiliation_string":"Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA","institution_ids":["https://openalex.org/I1289243028"]},{"raw_affiliation_string":"Graduate School of Genome Science and Technology, University of Tennessee, Knoxville, TN, USA","institution_ids":["https://openalex.org/I75027704"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103020638","display_name":"Qiuming Yao","orcid":"https://orcid.org/0000-0001-9974-8788"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qiuming Yao","raw_affiliation_strings":["Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA"],"affiliations":[{"raw_affiliation_string":"Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009743418","display_name":"Ryan Mueller","orcid":"https://orcid.org/0000-0001-9565-5912"},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ryan S Mueller","raw_affiliation_strings":["Department of Microbiology, Oregon State University, Corvallis, OR, USA"],"affiliations":[{"raw_affiliation_string":"Department of Microbiology, Oregon State University, Corvallis, OR, USA","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011565192","display_name":"Jimmy K. Eng","orcid":"https://orcid.org/0000-0001-6352-6737"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jimmy K Eng","raw_affiliation_strings":["Proteomics Resource, University of Washington, Seattle, WA, USA"],"affiliations":[{"raw_affiliation_string":"Proteomics Resource, University of Washington, Seattle, WA, USA","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062939937","display_name":"David L. Tabb","orcid":"https://orcid.org/0000-0001-7223-578X"},"institutions":[{"id":"https://openalex.org/I10947320","display_name":"South African Medical Research Council","ror":"https://ror.org/05q60vz69","country_code":"ZA","type":"other","lineage":["https://openalex.org/I10947320"]},{"id":"https://openalex.org/I26092322","display_name":"Stellenbosch University","ror":"https://ror.org/05bk57929","country_code":"ZA","type":"education","lineage":["https://openalex.org/I26092322"]},{"id":"https://openalex.org/I4210115889","display_name":"South African Tuberculosis Vaccine Initiative","ror":"https://ror.org/02jcef994","country_code":"ZA","type":"healthcare","lineage":["https://openalex.org/I4210115889"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"David L Tabb","raw_affiliation_strings":["DST/NRF Centre of Excellence for Biomedical Tuberculosis Research, SAMRC Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Cape Town, South Africa"],"affiliations":[{"raw_affiliation_string":"DST/NRF Centre of Excellence for Biomedical Tuberculosis Research, SAMRC Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Cape Town, South Africa","institution_ids":["https://openalex.org/I4210115889","https://openalex.org/I26092322","https://openalex.org/I10947320"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084421174","display_name":"W. Judson Hervey","orcid":"https://orcid.org/0000-0003-3285-6754"},"institutions":[{"id":"https://openalex.org/I1288214837","display_name":"United States Naval Research Laboratory","ror":"https://ror.org/04d23a975","country_code":"US","type":"facility","lineage":["https://openalex.org/I1288214837","https://openalex.org/I1330347796","https://openalex.org/I175003984","https://openalex.org/I3130687028"]},{"id":"https://openalex.org/I4388482722","display_name":"Naval Research Laboratory Center for Bio/Molecular Science and Engineering","ror":"https://ror.org/021m46s67","country_code":null,"type":"facility","lineage":["https://openalex.org/I1288214837","https://openalex.org/I1330347796","https://openalex.org/I175003984","https://openalex.org/I3130687028","https://openalex.org/I4388482722"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William Judson Hervey","raw_affiliation_strings":["Naval Research Laboratory, Center for Bio/Molecular Science & Engineering (Code 6910), Washington, DC, USA"],"affiliations":[{"raw_affiliation_string":"Naval Research Laboratory, Center for Bio/Molecular Science & Engineering (Code 6910), Washington, DC, USA","institution_ids":["https://openalex.org/I1288214837","https://openalex.org/I4388482722"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035236332","display_name":"Chongle Pan","orcid":"https://orcid.org/0000-0003-2860-0334"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]},{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Chongle Pan","raw_affiliation_strings":["Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA","Graduate School of Genome Science and Technology, University of Tennessee, Knoxville, TN, USA"],"affiliations":[{"raw_affiliation_string":"Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA","institution_ids":["https://openalex.org/I1289243028"]},{"raw_affiliation_string":"Graduate School of Genome Science and Technology, University of Tennessee, Knoxville, TN, USA","institution_ids":["https://openalex.org/I75027704"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5035236332"],"corresponding_institution_ids":["https://openalex.org/I1289243028","https://openalex.org/I75027704"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.0413,"has_fulltext":true,"cited_by_count":46,"citation_normalized_percentile":{"value":0.73456364,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"34","issue":"5","first_page":"795","last_page":"802"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metaproteomics","display_name":"Metaproteomics","score":0.9477422833442688},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6935633420944214},{"id":"https://openalex.org/keywords/comet","display_name":"Comet","score":0.635912299156189},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.5716937184333801},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4994833469390869},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4817221760749817},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.47997164726257324},{"id":"https://openalex.org/keywords/database-search-engine","display_name":"Database search engine","score":0.47506874799728394},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3283211886882782},{"id":"https://openalex.org/keywords/search-engine","display_name":"Search engine","score":0.218540221452713},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.21590575575828552},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1242697536945343}],"concepts":[{"id":"https://openalex.org/C199465337","wikidata":"https://www.wikidata.org/wiki/Q6823168","display_name":"Metaproteomics","level":4,"score":0.9477422833442688},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6935633420944214},{"id":"https://openalex.org/C94081185","wikidata":"https://www.wikidata.org/wiki/Q3559","display_name":"Comet","level":2,"score":0.635912299156189},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.5716937184333801},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4994833469390869},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4817221760749817},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.47997164726257324},{"id":"https://openalex.org/C48000682","wikidata":"https://www.wikidata.org/wiki/Q5227411","display_name":"Database search engine","level":3,"score":0.47506874799728394},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3283211886882782},{"id":"https://openalex.org/C97854310","wikidata":"https://www.wikidata.org/wiki/Q19541","display_name":"Search engine","level":2,"score":0.218540221452713},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.21590575575828552},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1242697536945343},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C87355193","wikidata":"https://www.wikidata.org/wiki/Q411","display_name":"Astrobiology","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btx601","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx601","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/5/795/25170640/btx601.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29028897","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29028897","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:osti.gov:1625293","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1625293","pdf_url":"https://www.osti.gov/servlets/purl/1625293","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:europepmc.org:5373896","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6192206","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6192206","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6192206","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btx601","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx601","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/5/795/25170640/btx601.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/14","score":0.5699999928474426,"display_name":"Life below water"}],"awards":[{"id":"https://openalex.org/G137681422","display_name":null,"funder_award_id":"DOE-SC10010566","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G1679750892","display_name":null,"funder_award_id":"DOE-SC10010566","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G1809866839","display_name":null,"funder_award_id":"GBMF3302","funder_id":"https://openalex.org/F4320306202","funder_display_name":"Gordon and Betty Moore Foundation"},{"id":"https://openalex.org/G2811237814","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320337345","funder_display_name":"Office of Naval Research"},{"id":"https://openalex.org/G6816148754","display_name":null,"funder_award_id":"SC10010566","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7320824963","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306078","funder_display_name":"U.S. Department of Defense"},{"id":"https://openalex.org/G7662864975","display_name":null,"funder_award_id":"DOE-SC10010566","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G851976585","display_name":null,"funder_award_id":"Program","funder_id":"https://openalex.org/F4320306202","funder_display_name":"Gordon and Betty Moore Foundation"}],"funders":[{"id":"https://openalex.org/F4320306078","display_name":"U.S. Department of Defense","ror":"https://ror.org/0447fe631"},{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320306202","display_name":"Gordon and Betty Moore Foundation","ror":"https://ror.org/006wxqw41"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320332923","display_name":"U.S. Navy","ror":"https://ror.org/03ar0mv07"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320337345","display_name":"Office of Naval Research","ror":"https://ror.org/00rk2pe57"},{"id":"https://openalex.org/F4320337509","display_name":"Biological and Environmental Research","ror":"https://ror.org/0114b2m14"},{"id":"https://openalex.org/F4320337538","display_name":"U.S. Army Corps of Engineers","ror":"https://ror.org/05w4e8v21"},{"id":"https://openalex.org/F4320337628","display_name":"U.S. Naval Research Laboratory","ror":"https://ror.org/04d23a975"},{"id":"https://openalex.org/F4320338258","display_name":"Engineer Research and Development Center","ror":"https://ror.org/027mhn368"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2757936553.pdf","grobid_xml":"https://content.openalex.org/works/W2757936553.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W1542926802","https://openalex.org/W1597678601","https://openalex.org/W1980641927","https://openalex.org/W1988096147","https://openalex.org/W2008117982","https://openalex.org/W2013717837","https://openalex.org/W2024668145","https://openalex.org/W2026465178","https://openalex.org/W2029674856","https://openalex.org/W2053573662","https://openalex.org/W2053943711","https://openalex.org/W2082006641","https://openalex.org/W2089273345","https://openalex.org/W2096057003","https://openalex.org/W2101234009","https://openalex.org/W2102572519","https://openalex.org/W2112143438","https://openalex.org/W2114291977","https://openalex.org/W2140437680","https://openalex.org/W2143280034","https://openalex.org/W2146886861","https://openalex.org/W2153132589","https://openalex.org/W2155443196","https://openalex.org/W2161815108","https://openalex.org/W2167872211","https://openalex.org/W2343222427","https://openalex.org/W2343276402","https://openalex.org/W2510341270","https://openalex.org/W2525780049","https://openalex.org/W2552175064","https://openalex.org/W2951031877","https://openalex.org/W6632575617","https://openalex.org/W6675354045","https://openalex.org/W6681266497","https://openalex.org/W7073816923"],"related_works":["https://openalex.org/W4211121339","https://openalex.org/W2171309014","https://openalex.org/W1493461584","https://openalex.org/W3033457987","https://openalex.org/W1577826155","https://openalex.org/W3149998985","https://openalex.org/W125827869","https://openalex.org/W3201900227","https://openalex.org/W1983206417","https://openalex.org/W2119925477"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":13},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":3}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}