{"id":"https://openalex.org/W2755392164","doi":"https://doi.org/10.1093/bioinformatics/btx592","title":"Mobi 2.0: an improved method to define intrinsic disorder, mobility and linear binding regions in protein structures","display_name":"Mobi 2.0: an improved method to define intrinsic disorder, mobility and linear binding regions in protein structures","publication_year":2017,"publication_date":"2017-09-15","ids":{"openalex":"https://openalex.org/W2755392164","doi":"https://doi.org/10.1093/bioinformatics/btx592","mag":"2755392164","pmid":"https://pubmed.ncbi.nlm.nih.gov/28968795"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btx592","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx592","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/1/122/25113720/btx592.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/1/122/25113720/btx592.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000882827","display_name":"Damiano Piovesan","orcid":"https://orcid.org/0000-0001-8210-2390"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Damiano Piovesan","raw_affiliation_strings":["Department of Biomedical Sciences, University of Padua Viale G. Colombo 3, Padova, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Sciences, University of Padua Viale G. Colombo 3, Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066560665","display_name":"Silvio C. E. Tosatto","orcid":"https://orcid.org/0000-0003-4525-7793"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]},{"id":"https://openalex.org/I4210113153","display_name":"Neuroscience Institute","ror":"https://ror.org/0240rwx68","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210113153","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Silvio C E Tosatto","raw_affiliation_strings":["CNR Institute of Neuroscience Viale G. Colombo 3, Padova, Italy","Department of Biomedical Sciences, University of Padua Viale G. Colombo 3, Padova, Italy"],"raw_orcid":"https://orcid.org/0000-0003-4525-7793","affiliations":[{"raw_affiliation_string":"CNR Institute of Neuroscience Viale G. Colombo 3, Padova, Italy","institution_ids":["https://openalex.org/I4210113153"]},{"raw_affiliation_string":"Department of Biomedical Sciences, University of Padua Viale G. Colombo 3, Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5066560665"],"corresponding_institution_ids":["https://openalex.org/I138689650","https://openalex.org/I4210113153"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.2168,"has_fulltext":true,"cited_by_count":29,"citation_normalized_percentile":{"value":0.78650733,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"34","issue":"1","first_page":"122","last_page":"123"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.7955999970436096,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.7955999970436096,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.15929999947547913,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11041","display_name":"Ubiquitin and proteasome pathways","score":0.00430000014603138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.8610422611236572},{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.722147524356842},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.656794548034668},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.6194216012954712},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5733210444450378},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.4425423741340637},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.43758174777030945},{"id":"https://openalex.org/keywords/intrinsically-disordered-proteins","display_name":"Intrinsically disordered proteins","score":0.4354621171951294},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4100457727909088},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3821079134941101},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3515145182609558},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1998485028743744},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1751159429550171},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.14673930406570435},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09863743185997009},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.0747462809085846}],"concepts":[{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.8610422611236572},{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.722147524356842},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.656794548034668},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.6194216012954712},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5733210444450378},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.4425423741340637},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.43758174777030945},{"id":"https://openalex.org/C2778815515","wikidata":"https://www.wikidata.org/wiki/Q3408242","display_name":"Intrinsically disordered proteins","level":2,"score":0.4354621171951294},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4100457727909088},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3821079134941101},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3515145182609558},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1998485028743744},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1751159429550171},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.14673930406570435},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09863743185997009},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0747462809085846},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btx592","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx592","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/1/122/25113720/btx592.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28968795","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28968795","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:www.research.unipd.it:11577/3257986","is_oa":false,"landing_page_url":"http://hdl.handle.net/11577/3257986","pdf_url":null,"source":{"id":"https://openalex.org/S4306402547","display_name":"Padua Research Archive (University of Padova)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138689650","host_organization_name":"University of Padua","host_organization_lineage":["https://openalex.org/I138689650"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:zenodo.org:100849","is_oa":true,"landing_page_url":"https://www.openaccessrepository.it/record/100849","pdf_url":null,"source":{"id":"https://openalex.org/S4306402478","display_name":"INFM-OAR (INFN Catania)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210116497","host_organization_name":"Istituto Nazionale di Fisica Nucleare, Sezione di Catania","host_organization_lineage":["https://openalex.org/I4210116497"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btx592","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx592","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/1/122/25113720/btx592.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3120303207","display_name":null,"funder_award_id":"IG 17753","funder_id":"https://openalex.org/F4320323054","funder_display_name":"Associazione Italiana per la Ricerca sul Cancro"},{"id":"https://openalex.org/G6504299545","display_name":null,"funder_award_id":"16621","funder_id":"https://openalex.org/F4320324143","funder_display_name":"Fondazione Italiana per la Ricerca sul Cancro"}],"funders":[{"id":"https://openalex.org/F4320323054","display_name":"Associazione Italiana per la Ricerca sul Cancro","ror":"https://ror.org/02g2x7380"},{"id":"https://openalex.org/F4320324143","display_name":"Fondazione Italiana per la Ricerca sul Cancro","ror":"https://ror.org/02g2x7380"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2755392164.pdf","grobid_xml":"https://content.openalex.org/works/W2755392164.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W2001297798","https://openalex.org/W2008708467","https://openalex.org/W2014776147","https://openalex.org/W2030776726","https://openalex.org/W2102245393","https://openalex.org/W2105629164","https://openalex.org/W2111930965","https://openalex.org/W2113985551","https://openalex.org/W2124879102","https://openalex.org/W2126103104","https://openalex.org/W2130479394","https://openalex.org/W2154139219","https://openalex.org/W2156407548","https://openalex.org/W2156465034","https://openalex.org/W2170463736","https://openalex.org/W2185628700","https://openalex.org/W2395425574","https://openalex.org/W4210702584","https://openalex.org/W4255594044"],"related_works":["https://openalex.org/W3181892255","https://openalex.org/W3132544722","https://openalex.org/W4232154957","https://openalex.org/W4292058683","https://openalex.org/W4376646754","https://openalex.org/W4307362031","https://openalex.org/W4389222350","https://openalex.org/W2022209941","https://openalex.org/W4205671017","https://openalex.org/W4375844720"],"abstract_inverted_index":{"Motivation:":[0],"The":[1,156,187],"structures":[2,146],"contained":[3],"in":[4],"the":[5,35,60,63,79,83,123,148,162,180,184],"Protein":[6],"Data":[7],"Bank":[8],"(PDB)":[9],"database":[10],"are":[11,52],"of":[12,19,37,62,78,85,99,106,122,164],"paramount":[13],"importance":[14],"to":[15,33,129,140,160,174],"define":[16,34],"our":[17],"knowledge":[18],"folded":[20],"proteins.":[21],"While":[22],"providing":[23,153],"mainly":[24],"circumstantial":[25],"evidence,":[26],"PDB":[27,92,145],"data":[28],"is":[29,137,158,189],"also":[30],"increasingly":[31],"used":[32,53],"lack":[36],"unique":[38],"structure,":[39],"represented":[40],"by":[41,54],"mobile":[42,86],"regions":[43,90],"and":[44,57,87,126],"even":[45],"intrinsic":[46],"disorder":[47],"(ID).":[48],"However,":[49],"alternative":[50],"definitions":[51,98],"different":[55,120,144,171],"authors":[56],"potentially":[58,88],"limit":[59],"generality":[61],"analyses":[64],"being":[65],"carried":[66],"out.":[67],"Results:":[68],"Here":[69],"we":[70],"present":[71],"Mobi":[72,80,94,135,177],"2.0,":[73],"a":[74],"completely":[75],"re-written":[76],"version":[77],"software":[81,157,188],"for":[82,147,183],"determination":[84],"disordered":[89],"from":[91,191],"structures.":[93],"2.0":[95,136,178],"provides":[96,179],"robust":[97],"mobility":[100,118],"based":[101],"on":[102],"four":[103],"main":[104],"sources":[105],"information:":[107],"(i)":[108],"missing":[109],"residues,":[110],"(ii)":[111],"residues":[112],"with":[113],"high":[114],"temperature":[115],"factors,":[116],"(iii)":[117],"between":[119],"models":[121],"same":[124,149],"structure":[125],"(iv)":[127],"binding":[128],"another":[130],"protein":[131,151],"or":[132],"nucleotide":[133],"chain.":[134],"well":[138],"suited":[139],"aggregate":[141],"information":[142],"across":[143,170],"UniProt":[150],"sequence,":[152],"consensus":[154],"annotations.":[155],"expected":[159],"standardize":[161],"treatment":[163],"mobility,":[165],"allowing":[166],"an":[167],"easier":[168],"comparison":[169],"studies":[172],"related":[173],"ID.":[175],"Availability:":[176],"structure-based":[181],"annotation":[182],"MobiDB":[185],"database.":[186],"available":[190],"URL":[192],"http://protein.bio.unipd.it/mobi2/.":[193],"Contact:":[194],"silvio.tosatto@unipd.it.":[195]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
