{"id":"https://openalex.org/W2755922403","doi":"https://doi.org/10.1093/bioinformatics/btx582","title":"Ms2lda.org: web-based topic modelling for substructure discovery in mass spectrometry","display_name":"Ms2lda.org: web-based topic modelling for substructure discovery in mass spectrometry","publication_year":2017,"publication_date":"2017-09-13","ids":{"openalex":"https://openalex.org/W2755922403","doi":"https://doi.org/10.1093/bioinformatics/btx582","mag":"2755922403","pmid":"https://pubmed.ncbi.nlm.nih.gov/28968802"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btx582","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx582","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/2/317/25114199/btx582.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/2/317/25114199/btx582.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034049617","display_name":"Joe Wandy","orcid":"https://orcid.org/0000-0002-3068-4664"},"institutions":[{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Joe Wandy","raw_affiliation_strings":["Glasgow Polyomics University of Glasgow, Glasgow, UK"],"affiliations":[{"raw_affiliation_string":"Glasgow Polyomics University of Glasgow, Glasgow, UK","institution_ids":["https://openalex.org/I7882870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110367305","display_name":"Yunfeng Zhu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210094430","display_name":"Wellcome Centre for Molecular Parasitology","ror":"https://ror.org/00m7w8s72","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210094430","https://openalex.org/I7882870","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Yunfeng Zhu","raw_affiliation_strings":["Wellcome Centre for Molecular Parasitology, Glasgow, UK"],"affiliations":[{"raw_affiliation_string":"Wellcome Centre for Molecular Parasitology, Glasgow, UK","institution_ids":["https://openalex.org/I4210094430"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075156076","display_name":"Justin J. J. van der Hooft","orcid":"https://orcid.org/0000-0002-9340-5511"},"institutions":[{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Justin J J van der Hooft","raw_affiliation_strings":["Glasgow Polyomics University of Glasgow, Glasgow, UK"],"affiliations":[{"raw_affiliation_string":"Glasgow Polyomics University of Glasgow, Glasgow, UK","institution_ids":["https://openalex.org/I7882870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043557336","display_name":"R\u00f3n\u00e1n Daly","orcid":"https://orcid.org/0000-0002-1275-6820"},"institutions":[{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"R\u00f3n\u00e1n Daly","raw_affiliation_strings":["Glasgow Polyomics University of Glasgow, Glasgow, UK"],"affiliations":[{"raw_affiliation_string":"Glasgow Polyomics University of Glasgow, Glasgow, UK","institution_ids":["https://openalex.org/I7882870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073175338","display_name":"Michael P. Barrett","orcid":"https://orcid.org/0000-0001-9447-3519"},"institutions":[{"id":"https://openalex.org/I4210094430","display_name":"Wellcome Centre for Molecular Parasitology","ror":"https://ror.org/00m7w8s72","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210094430","https://openalex.org/I7882870","https://openalex.org/I87048295"]},{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Michael P Barrett","raw_affiliation_strings":["Glasgow Polyomics University of Glasgow, Glasgow, UK","Wellcome Centre for Molecular Parasitology, Glasgow, UK"],"affiliations":[{"raw_affiliation_string":"Glasgow Polyomics University of Glasgow, Glasgow, UK","institution_ids":["https://openalex.org/I7882870"]},{"raw_affiliation_string":"Wellcome Centre for Molecular Parasitology, Glasgow, UK","institution_ids":["https://openalex.org/I4210094430"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060432668","display_name":"Simon Rogers","orcid":"https://orcid.org/0000-0003-3578-4477"},"institutions":[{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Simon Rogers","raw_affiliation_strings":["School of Computing Science, University of Glasgow, UK"],"affiliations":[{"raw_affiliation_string":"School of Computing Science, University of Glasgow, UK","institution_ids":["https://openalex.org/I7882870"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5060432668"],"corresponding_institution_ids":["https://openalex.org/I7882870"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":1026,"currency":"EUR","value_usd":1106},"fwci":3.1333,"has_fulltext":false,"cited_by_count":129,"citation_normalized_percentile":{"value":0.92600651,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"34","issue":"2","first_page":"317","last_page":"318"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8315439224243164},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.6429716348648071},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6139630675315857},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.5374449491500854},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5226690173149109},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.49971675872802734},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4655042290687561},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4507666230201721},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4405219256877899},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.44043660163879395},{"id":"https://openalex.org/keywords/fragment","display_name":"Fragment (logic)","score":0.42351460456848145},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.36945927143096924},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3653396964073181},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.2486775815486908},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.14887025952339172},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.09878236055374146}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8315439224243164},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.6429716348648071},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6139630675315857},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.5374449491500854},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5226690173149109},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.49971675872802734},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4655042290687561},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4507666230201721},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4405219256877899},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.44043660163879395},{"id":"https://openalex.org/C2776235265","wikidata":"https://www.wikidata.org/wiki/Q18392052","display_name":"Fragment (logic)","level":2,"score":0.42351460456848145},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.36945927143096924},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3653396964073181},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.2486775815486908},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.14887025952339172},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.09878236055374146},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btx582","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx582","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/2/317/25114199/btx582.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28968802","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28968802","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:eprints.gla.ac.uk:147960","is_oa":true,"landing_page_url":"http://eprints.gla.ac.uk/view/author/36328.html>","pdf_url":null,"source":{"id":"https://openalex.org/S4210235606","display_name":"ENLIGHTEN (Jurnal Bimbingan dan Konseling Islam)","issn_l":"2622-8912","issn":["2622-8912","2622-8920"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"PeerReviewed"},{"id":"pmh:oai:pubmedcentral.nih.gov:5860206","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5860206","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btx582","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx582","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/2/317/25114199/btx582.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4884596146","display_name":"Unifying metabolome and proteome informatics","funder_award_id":"BB/L018616/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G501472786","display_name":null,"funder_award_id":"MR/N005813/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G6613322278","display_name":null,"funder_award_id":"105614/Z/14/Z","funder_id":"https://openalex.org/F4320307874","funder_display_name":"Wellcome"},{"id":"https://openalex.org/G6745265881","display_name":null,"funder_award_id":"BB/L018616/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320307874","display_name":"Wellcome","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2755922403.pdf","grobid_xml":"https://content.openalex.org/works/W2755922403.grobid-xml"},"referenced_works_count":2,"referenced_works":["https://openalex.org/W2158384363","https://openalex.org/W2551876238"],"related_works":["https://openalex.org/W2367815957","https://openalex.org/W3096946169","https://openalex.org/W2113128227","https://openalex.org/W4312114021","https://openalex.org/W2144610372","https://openalex.org/W4311938462","https://openalex.org/W2121840477","https://openalex.org/W2515936044","https://openalex.org/W3123068371","https://openalex.org/W1518632238"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":20},{"year":2024,"cited_by_count":23},{"year":2023,"cited_by_count":16},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":28},{"year":2020,"cited_by_count":12},{"year":2019,"cited_by_count":11},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
