{"id":"https://openalex.org/W2953385017","doi":"https://doi.org/10.1093/bioinformatics/btx580","title":"CRISPR-RT: a web application for designing CRISPR-C2c2 crRNA with improved target specificity","display_name":"CRISPR-RT: a web application for designing CRISPR-C2c2 crRNA with improved target specificity","publication_year":2017,"publication_date":"2017-09-13","ids":{"openalex":"https://openalex.org/W2953385017","doi":"https://doi.org/10.1093/bioinformatics/btx580","mag":"2953385017","pmid":"https://pubmed.ncbi.nlm.nih.gov/28968770"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btx580","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx580","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/1/117/25113717/btx580.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/1/117/25113717/btx580.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068452155","display_name":"Houxiang Zhu","orcid":null},"institutions":[{"id":"https://openalex.org/I83328450","display_name":"Miami University","ror":"https://ror.org/05nbqxr67","country_code":"US","type":"education","lineage":["https://openalex.org/I83328450"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Houxiang Zhu","raw_affiliation_strings":["Department of Biology, Miami University, Oxford, OH, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biology, Miami University, Oxford, OH, USA","institution_ids":["https://openalex.org/I83328450"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090756618","display_name":"Emily Richmond","orcid":null},"institutions":[{"id":"https://openalex.org/I83328450","display_name":"Miami University","ror":"https://ror.org/05nbqxr67","country_code":"US","type":"education","lineage":["https://openalex.org/I83328450"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Emily Richmond","raw_affiliation_strings":["Department of Computer Science and Software Engineering, Miami University, Oxford, OH, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Software Engineering, Miami University, Oxford, OH, USA","institution_ids":["https://openalex.org/I83328450"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101531536","display_name":"Chun Liang","orcid":"https://orcid.org/0000-0003-1996-6027"},"institutions":[{"id":"https://openalex.org/I83328450","display_name":"Miami University","ror":"https://ror.org/05nbqxr67","country_code":"US","type":"education","lineage":["https://openalex.org/I83328450"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Chun Liang","raw_affiliation_strings":["Department of Biology, Miami University, Oxford, OH, USA","Department of Computer Science and Software Engineering, Miami University, Oxford, OH, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biology, Miami University, Oxford, OH, USA","institution_ids":["https://openalex.org/I83328450"]},{"raw_affiliation_string":"Department of Computer Science and Software Engineering, Miami University, Oxford, OH, USA","institution_ids":["https://openalex.org/I83328450"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5101531536"],"corresponding_institution_ids":["https://openalex.org/I83328450"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.7309,"has_fulltext":false,"cited_by_count":36,"citation_normalized_percentile":{"value":0.85135815,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"34","issue":"1","first_page":"117","last_page":"119"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12610","display_name":"RNA regulation and disease","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/crispr","display_name":"CRISPR","score":0.9857562780380249},{"id":"https://openalex.org/keywords/trans-activating-crrna","display_name":"Trans-activating crRNA","score":0.9067544341087341},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5957759618759155},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.550125241279602},{"id":"https://openalex.org/keywords/genome-editing","display_name":"Genome editing","score":0.5139784216880798},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5038382411003113},{"id":"https://openalex.org/keywords/cas9","display_name":"Cas9","score":0.48555538058280945},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4350036084651947},{"id":"https://openalex.org/keywords/guide-rna","display_name":"Guide RNA","score":0.4126778542995453},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.22355562448501587},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1498461663722992}],"concepts":[{"id":"https://openalex.org/C98108389","wikidata":"https://www.wikidata.org/wiki/Q412563","display_name":"CRISPR","level":3,"score":0.9857562780380249},{"id":"https://openalex.org/C84356384","wikidata":"https://www.wikidata.org/wiki/Q7833575","display_name":"Trans-activating crRNA","level":5,"score":0.9067544341087341},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5957759618759155},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.550125241279602},{"id":"https://openalex.org/C144501496","wikidata":"https://www.wikidata.org/wiki/Q5533489","display_name":"Genome editing","level":4,"score":0.5139784216880798},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5038382411003113},{"id":"https://openalex.org/C132455925","wikidata":"https://www.wikidata.org/wiki/Q16965677","display_name":"Cas9","level":4,"score":0.48555538058280945},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4350036084651947},{"id":"https://openalex.org/C97702854","wikidata":"https://www.wikidata.org/wiki/Q4039747","display_name":"Guide RNA","level":5,"score":0.4126778542995453},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.22355562448501587},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1498461663722992}],"mesh":[{"descriptor_ui":"D005818","descriptor_name":"Genetic Engineering","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005818","descriptor_name":"Genetic Engineering","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005818","descriptor_name":"Genetic Engineering","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017393","descriptor_name":"RNA Editing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017393","descriptor_name":"RNA Editing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017393","descriptor_name":"RNA Editing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064113","descriptor_name":"CRISPR-Cas Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064113","descriptor_name":"CRISPR-Cas Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064113","descriptor_name":"CRISPR-Cas Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btx580","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx580","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/1/117/25113717/btx580.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28968770","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28968770","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btx580","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx580","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/1/117/25113717/btx580.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2953385017.pdf","grobid_xml":"https://content.openalex.org/works/W2953385017.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W2032141669","https://openalex.org/W2101749257","https://openalex.org/W2110399041","https://openalex.org/W2167155938","https://openalex.org/W2170551349","https://openalex.org/W2409671300","https://openalex.org/W2508214013","https://openalex.org/W2522085729","https://openalex.org/W2525809657","https://openalex.org/W2536745874","https://openalex.org/W2559302185","https://openalex.org/W2606915822"],"related_works":["https://openalex.org/W2470941003","https://openalex.org/W2770848007","https://openalex.org/W4285586845","https://openalex.org/W930226034","https://openalex.org/W2463802462","https://openalex.org/W2473112503","https://openalex.org/W3003269839","https://openalex.org/W2989961838","https://openalex.org/W2936470333","https://openalex.org/W2619234747"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":12},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2}],"updated_date":"2026-03-09T08:58:05.943551","created_date":"2025-10-10T00:00:00"}
