{"id":"https://openalex.org/W2752450281","doi":"https://doi.org/10.1093/bioinformatics/btx558","title":"DART: a fast and accurate RNA-seq mapper with a partitioning strategy","display_name":"DART: a fast and accurate RNA-seq mapper with a partitioning strategy","publication_year":2017,"publication_date":"2017-09-04","ids":{"openalex":"https://openalex.org/W2752450281","doi":"https://doi.org/10.1093/bioinformatics/btx558","mag":"2752450281","pmid":"https://pubmed.ncbi.nlm.nih.gov/28968831"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btx558","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx558","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/2/190/25114218/btx558.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/2/190/25114218/btx558.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073696674","display_name":"Hsin-Nan Lin","orcid":"https://orcid.org/0000-0001-7225-7161"},"institutions":[{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Hsin-Nan Lin","raw_affiliation_strings":["Institute of Information Science, Academia Sinica, Taipei, Taiwan"],"affiliations":[{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210098366"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075392444","display_name":"Wen\u2010Lian Hsu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Wen-Lian Hsu","raw_affiliation_strings":["Institute of Information Science, Academia Sinica, Taipei, Taiwan"],"affiliations":[{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210098366"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5075392444"],"corresponding_institution_ids":["https://openalex.org/I4210098366"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.8952,"has_fulltext":false,"cited_by_count":30,"citation_normalized_percentile":{"value":0.73790623,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"34","issue":"2","first_page":"190","last_page":"197"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8097753524780273},{"id":"https://openalex.org/keywords/massive-parallel-sequencing","display_name":"Massive parallel sequencing","score":0.5959018468856812},{"id":"https://openalex.org/keywords/dart","display_name":"Dart","score":0.559191107749939},{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.498521089553833},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.43745383620262146},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4005155563354492},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.35629725456237793},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.34699884057044983},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.1628892719745636},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14867573976516724},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11189588904380798},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11058354377746582}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8097753524780273},{"id":"https://openalex.org/C192800701","wikidata":"https://www.wikidata.org/wiki/Q6784807","display_name":"Massive parallel sequencing","level":4,"score":0.5959018468856812},{"id":"https://openalex.org/C2779417484","wikidata":"https://www.wikidata.org/wiki/Q406009","display_name":"Dart","level":2,"score":0.559191107749939},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.498521089553833},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.43745383620262146},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4005155563354492},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.35629725456237793},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34699884057044983},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.1628892719745636},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14867573976516724},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11189588904380798},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11058354377746582},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btx558","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx558","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/2/190/25114218/btx558.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28968831","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28968831","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:5860201","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5860201","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btx558","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx558","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/2/190/25114218/btx558.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6638431993","display_name":null,"funder_award_id":"105-2319-B-400-002","funder_id":"https://openalex.org/F4320309618","funder_display_name":"Ministry of Science and Technology"}],"funders":[{"id":"https://openalex.org/F4320309618","display_name":"Ministry of Science and Technology","ror":"https://ror.org/02b207r52"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2752450281.pdf","grobid_xml":"https://content.openalex.org/works/W2752450281.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W1562006861","https://openalex.org/W2008264512","https://openalex.org/W2025648894","https://openalex.org/W2032610035","https://openalex.org/W2053057991","https://openalex.org/W2054576015","https://openalex.org/W2055770801","https://openalex.org/W2064641822","https://openalex.org/W2077836479","https://openalex.org/W2093931624","https://openalex.org/W2096173343","https://openalex.org/W2096441981","https://openalex.org/W2096465161","https://openalex.org/W2097065948","https://openalex.org/W2102278945","https://openalex.org/W2103441770","https://openalex.org/W2108234281","https://openalex.org/W2110905563","https://openalex.org/W2112113834","https://openalex.org/W2116041602","https://openalex.org/W2120293208","https://openalex.org/W2123402634","https://openalex.org/W2126144698","https://openalex.org/W2134924833","https://openalex.org/W2139523073","https://openalex.org/W2140729960","https://openalex.org/W2154431984","https://openalex.org/W2158717244","https://openalex.org/W2161488606","https://openalex.org/W2169456326","https://openalex.org/W2236822143","https://openalex.org/W2604364312"],"related_works":["https://openalex.org/W2887244195","https://openalex.org/W4390966252","https://openalex.org/W4383426117","https://openalex.org/W2161546116","https://openalex.org/W2522810657","https://openalex.org/W3082388066","https://openalex.org/W2343109370","https://openalex.org/W2755819208","https://openalex.org/W1978155433","https://openalex.org/W2520518209"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":2}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}