{"id":"https://openalex.org/W2753374271","doi":"https://doi.org/10.1093/bioinformatics/btx555","title":"LightDock: a new multi-scale approach to protein\u2013protein docking","display_name":"LightDock: a new multi-scale approach to protein\u2013protein docking","publication_year":2017,"publication_date":"2017-09-01","ids":{"openalex":"https://openalex.org/W2753374271","doi":"https://doi.org/10.1093/bioinformatics/btx555","mag":"2753374271","pmid":"https://pubmed.ncbi.nlm.nih.gov/28968719"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btx555","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx555","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/1/49/25113700/btx555.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/1/49/25113700/btx555.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012374366","display_name":"Brian Jim\u00e9nez\u2010Garc\u00eda","orcid":"https://orcid.org/0000-0001-7786-2109"},"institutions":[{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Brian Jim\u00e9nez-Garc\u00eda","raw_affiliation_strings":["Life Sciences Department, Barcelona Supercomputing Center (BSC), Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Life Sciences Department, Barcelona Supercomputing Center (BSC), Barcelona, Spain","institution_ids":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086790564","display_name":"Jorge Roel\u2010Touris","orcid":"https://orcid.org/0000-0002-6588-624X"},"institutions":[{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jorge Roel-Touris","raw_affiliation_strings":["Life Sciences Department, Barcelona Supercomputing Center (BSC), Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Life Sciences Department, Barcelona Supercomputing Center (BSC), Barcelona, Spain","institution_ids":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050289106","display_name":"Miguel Romero\u2010Durana","orcid":"https://orcid.org/0000-0001-6779-8553"},"institutions":[{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Miguel Romero-Durana","raw_affiliation_strings":["Life Sciences Department, Barcelona Supercomputing Center (BSC), Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Life Sciences Department, Barcelona Supercomputing Center (BSC), Barcelona, Spain","institution_ids":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091547255","display_name":"Miquel Vidal","orcid":"https://orcid.org/0000-0002-1973-8289"},"institutions":[{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Miquel Vidal","raw_affiliation_strings":["Life Sciences Department, Barcelona Supercomputing Center (BSC), Barcelona, Spain"],"raw_orcid":"https://orcid.org/0000-0002-1973-8289","affiliations":[{"raw_affiliation_string":"Life Sciences Department, Barcelona Supercomputing Center (BSC), Barcelona, Spain","institution_ids":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084498827","display_name":"Daniel Jim\u00e9nez-Gonz\u00e1lez","orcid":"https://orcid.org/0000-0001-6064-7883"},"institutions":[{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Daniel Jim\u00e9nez-Gonz\u00e1lez","raw_affiliation_strings":["Department of Computer Architecture, Universitat Polit\u00e8cnica de Catalunya, Barcelona, Spain","Life Sciences Department, Barcelona Supercomputing Center (BSC), Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Architecture, Universitat Polit\u00e8cnica de Catalunya, Barcelona, Spain","institution_ids":["https://openalex.org/I9617848"]},{"raw_affiliation_string":"Life Sciences Department, Barcelona Supercomputing Center (BSC), Barcelona, Spain","institution_ids":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021117369","display_name":"Juan Fern\u00e1ndez\u2010Recio","orcid":"https://orcid.org/0000-0002-3986-7686"},"institutions":[{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I4210166526","display_name":"Institut de Biologia Molecular de Barcelona","ror":"https://ror.org/05t8khn72","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210166526"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Juan Fern\u00e1ndez-Recio","raw_affiliation_strings":["Life Sciences Department, Barcelona Supercomputing Center (BSC), Barcelona, Spain","Structural Biology Unit, IBMB-CSIC, Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Life Sciences Department, Barcelona Supercomputing Center (BSC), Barcelona, Spain","institution_ids":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"raw_affiliation_string":"Structural Biology Unit, IBMB-CSIC, Barcelona, Spain","institution_ids":["https://openalex.org/I4210166526"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5021117369"],"corresponding_institution_ids":["https://openalex.org/I2799803557","https://openalex.org/I4210166526","https://openalex.org/I9617848"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":6.4233,"has_fulltext":true,"cited_by_count":144,"citation_normalized_percentile":{"value":0.9665908,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"34","issue":"1","first_page":"49","last_page":"55"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10613","display_name":"Virus-based gene therapy research","score":0.9900000095367432,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10613","display_name":"Virus-based gene therapy research","score":0.9900000095367432,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9898999929428101,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12996","display_name":"Cancer Research and Treatments","score":0.9873999953269958,"subfield":{"id":"https://openalex.org/subfields/1305","display_name":"Biotechnology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.7778253555297852},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6316593289375305},{"id":"https://openalex.org/keywords/protein\u2013ligand-docking","display_name":"Protein\u2013ligand docking","score":0.5068116784095764},{"id":"https://openalex.org/keywords/macromolecular-docking","display_name":"Macromolecular docking","score":0.42633140087127686},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.34944820404052734},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.3033324182033539},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.19160166382789612},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.1623930037021637},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15133914351463318},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.09183180332183838},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.08505335450172424},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.06336325407028198},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.05335196852684021}],"concepts":[{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.7778253555297852},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6316593289375305},{"id":"https://openalex.org/C77319485","wikidata":"https://www.wikidata.org/wiki/Q7251520","display_name":"Protein\u2013ligand docking","level":4,"score":0.5068116784095764},{"id":"https://openalex.org/C116887118","wikidata":"https://www.wikidata.org/wiki/Q836685","display_name":"Macromolecular docking","level":3,"score":0.42633140087127686},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34944820404052734},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.3033324182033539},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.19160166382789612},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.1623930037021637},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15133914351463318},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.09183180332183838},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.08505335450172424},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.06336325407028198},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.05335196852684021},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014367","descriptor_name":"Tryptophan Synthase","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014367","descriptor_name":"Tryptophan Synthase","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014367","descriptor_name":"Tryptophan Synthase","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014367","descriptor_name":"Tryptophan Synthase","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014367","descriptor_name":"Tryptophan Synthase","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014367","descriptor_name":"Tryptophan Synthase","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btx555","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx555","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/1/49/25113700/btx555.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28968719","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28968719","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:upcommons.upc.edu:2117/114893","is_oa":true,"landing_page_url":"https://hdl.handle.net/2117/114893","pdf_url":null,"source":{"id":"https://openalex.org/S4377196262","display_name":"UPCommons institutional repository (Universitat Polit\u00e8cnica de Catalunya)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I9617848","host_organization_name":"Universitat Polit\u00e8cnica de Catalunya","host_organization_lineage":["https://openalex.org/I9617848"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:digital.csic.es:10261/174238","is_oa":false,"landing_page_url":"http://hdl.handle.net/10261/174238","pdf_url":null,"source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Art\u00edculo"},{"id":"pmh:oai:upcommons.upc.edu:2117/114027","is_oa":true,"landing_page_url":"https://hdl.handle.net/2117/114027","pdf_url":null,"source":{"id":"https://openalex.org/S4377196262","display_name":"UPCommons institutional repository (Universitat Polit\u00e8cnica de Catalunya)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I9617848","host_organization_name":"Universitat Polit\u00e8cnica de Catalunya","host_organization_lineage":["https://openalex.org/I9617848"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btx555","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx555","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/1/49/25113700/btx555.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G152318085","display_name":null,"funder_award_id":"BIO2016-79930-R","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G178585038","display_name":null,"funder_award_id":"687698","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G2322208022","display_name":null,"funder_award_id":"SEV2015- 0493","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G2436365243","display_name":null,"funder_award_id":"2014-SGR-1051","funder_id":"https://openalex.org/F4320321505","funder_display_name":"Generalitat de Catalunya"},{"id":"https://openalex.org/G3324247440","display_name":null,"funder_award_id":"TIN2015-65316-P","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G495187929","display_name":null,"funder_award_id":"EU\u2010H2020","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G5160432310","display_name":null,"funder_award_id":"2014SGR1051","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G5592594182","display_name":null,"funder_award_id":"TIN2015-65316","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G7096924396","display_name":null,"funder_award_id":"TIN2015-65316","funder_id":"https://openalex.org/F4320321505","funder_display_name":"Generalitat de Catalunya"},{"id":"https://openalex.org/G7422144096","display_name":null,"funder_award_id":"GA 687698","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G8328074867","display_name":null,"funder_award_id":"BIO2013\u201048213\u2010R","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"}],"funders":[{"id":"https://openalex.org/F4320321505","display_name":"Generalitat de Catalunya","ror":"https://ror.org/01bg62x04"},{"id":"https://openalex.org/F4320321837","display_name":"Ministerio de Econom\u00eda y Competitividad","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320332999","display_name":"Horizon 2020 Framework Programme","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2753374271.pdf","grobid_xml":"https://content.openalex.org/works/W2753374271.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W13135463","https://openalex.org/W1030883578","https://openalex.org/W1566201844","https://openalex.org/W1601270585","https://openalex.org/W1965379872","https://openalex.org/W1980120676","https://openalex.org/W1993591356","https://openalex.org/W2000383223","https://openalex.org/W2005303195","https://openalex.org/W2009129583","https://openalex.org/W2024911966","https://openalex.org/W2036199279","https://openalex.org/W2055905702","https://openalex.org/W2066244933","https://openalex.org/W2067305633","https://openalex.org/W2073911195","https://openalex.org/W2087485814","https://openalex.org/W2096358531","https://openalex.org/W2099367604","https://openalex.org/W2100025509","https://openalex.org/W2108445825","https://openalex.org/W2112320038","https://openalex.org/W2113994268","https://openalex.org/W2123681603","https://openalex.org/W2125626635","https://openalex.org/W2125677968","https://openalex.org/W2126265982","https://openalex.org/W2136777954","https://openalex.org/W2139319441","https://openalex.org/W2147774191","https://openalex.org/W2152409953","https://openalex.org/W2153731681","https://openalex.org/W2153983456","https://openalex.org/W2160868144","https://openalex.org/W2162682281","https://openalex.org/W2163194931","https://openalex.org/W2165179864","https://openalex.org/W2171778773","https://openalex.org/W2313689636","https://openalex.org/W2332013262","https://openalex.org/W2465190302","https://openalex.org/W4321317585"],"related_works":["https://openalex.org/W1489925612","https://openalex.org/W3011103292","https://openalex.org/W4400485740","https://openalex.org/W2533022751","https://openalex.org/W2064383522","https://openalex.org/W2553094381","https://openalex.org/W2585040066","https://openalex.org/W3187431608","https://openalex.org/W1974422922","https://openalex.org/W4309353019"],"abstract_inverted_index":{"Motivation:":[0],"Computational":[1],"prediction":[2],"of":[3,18,52,72,79,101,108,117,148],"protein-protein":[4,96],"complex":[5],"structure":[6],"by":[7],"docking":[8,97],"can":[9],"provide":[10],"structural":[11,48],"and":[12,49,84,105,123,143,151],"mechanistic":[13],"insights":[14],"for":[15,156],"protein":[16],"interactions":[17],"biomedical":[19],"interest.":[20],"However,":[21],"current":[22],"methods":[23],"struggle":[24],"with":[25,132],"difficult":[26],"cases,":[27],"such":[28],"as":[29],"those":[30],"involving":[31],"flexible":[32,140],"proteins,":[33],"low-affinity":[34],"complexes":[35],"or":[36],"transient":[37],"interactions.":[38],"A":[39],"major":[40],"challenge":[41],"is":[42,64],"how":[43],"to":[44,68,134],"efficiently":[45],"sample":[46],"the":[47,53,121,149],"energetic":[50],"landscape":[51],"association":[54],"at":[55,111,158,168],"different":[56,112],"resolution":[57,113],"levels,":[58],"given":[59],"that":[60],"each":[61],"scoring":[62,85,109,126],"function":[63],"often":[65],"highly":[66],"coupled":[67],"a":[69,93,106],"specific":[70],"type":[71],"search":[73,122],"method.":[74],"Thus,":[75],"new":[76,94],"methodologies":[77],"capable":[78,100],"accommodating":[80,102],"multi-scale":[81,95],"conformational":[82,103],"flexibility":[83,104],"are":[86,154,166],"strongly":[87],"needed.":[88],"Results:":[89],"We":[90],"describe":[91],"here":[92],"methodology,":[98],"LightDock,":[99],"variety":[107],"functions":[110,127],"levels.":[114],"Implicit":[115],"use":[116],"normal":[118],"modes":[119],"during":[120],"atomic/coarse-grained":[124],"combined":[125],"yielded":[128],"improved":[129],"predictive":[130],"results":[131],"respect":[133],"state-of-the-art":[135],"rigid-body":[136],"docking,":[137],"especially":[138],"in":[139],"cases.":[141],"Availability":[142],"implementation:":[144],"The":[145],"source":[146],"code":[147],"software":[150],"installation":[152],"instructions":[153],"available":[155,167],"download":[157],"https://life.bsc.es/pid/lightdock/.":[159],"Contact:":[160],"juanf@bsc.es.":[161],"Supplementary":[162,164],"information:":[163],"data":[165],"Bioinformatics":[169],"online.":[170]},"counts_by_year":[{"year":2026,"cited_by_count":17},{"year":2025,"cited_by_count":24},{"year":2024,"cited_by_count":16},{"year":2023,"cited_by_count":19},{"year":2022,"cited_by_count":21},{"year":2021,"cited_by_count":15},{"year":2020,"cited_by_count":16},{"year":2019,"cited_by_count":12},{"year":2018,"cited_by_count":4}],"updated_date":"2026-08-10T07:06:39.071514","created_date":"2017-09-15T00:00:00"}
