{"id":"https://openalex.org/W2753370921","doi":"https://doi.org/10.1093/bioinformatics/btx554","title":"Dugong: a Docker image, based on Ubuntu Linux, focused on reproducibility and replicability for bioinformatics analyses","display_name":"Dugong: a Docker image, based on Ubuntu Linux, focused on reproducibility and replicability for bioinformatics analyses","publication_year":2017,"publication_date":"2017-09-01","ids":{"openalex":"https://openalex.org/W2753370921","doi":"https://doi.org/10.1093/bioinformatics/btx554","mag":"2753370921","pmid":"https://pubmed.ncbi.nlm.nih.gov/28968637"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btx554","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx554","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/3/514/25117027/btx554.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/34/3/514/25117027/btx554.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013785022","display_name":"Fabiano Bezerra Meneg\u00eddio","orcid":"https://orcid.org/0000-0002-4705-8352"},"institutions":[{"id":"https://openalex.org/I98496276","display_name":"Universidade de Mogi das Cruzes","ror":"https://ror.org/04hnrs676","country_code":"BR","type":"education","lineage":["https://openalex.org/I98496276"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Fabiano B Menegidio","raw_affiliation_strings":["N\u00facleo Integrado de Biotecnologia, Universidade de Mogi das Cruzes (UMC), Mogi das Cruzes, SP, Brazil"],"affiliations":[{"raw_affiliation_string":"N\u00facleo Integrado de Biotecnologia, Universidade de Mogi das Cruzes (UMC), Mogi das Cruzes, SP, Brazil","institution_ids":["https://openalex.org/I98496276"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055617109","display_name":"Daniela Jab\u00e9s","orcid":"https://orcid.org/0000-0001-7297-0784"},"institutions":[{"id":"https://openalex.org/I98496276","display_name":"Universidade de Mogi das Cruzes","ror":"https://ror.org/04hnrs676","country_code":"BR","type":"education","lineage":["https://openalex.org/I98496276"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Daniela L Jabes","raw_affiliation_strings":["N\u00facleo Integrado de Biotecnologia, Universidade de Mogi das Cruzes (UMC), Mogi das Cruzes, SP, Brazil"],"affiliations":[{"raw_affiliation_string":"N\u00facleo Integrado de Biotecnologia, Universidade de Mogi das Cruzes (UMC), Mogi das Cruzes, SP, Brazil","institution_ids":["https://openalex.org/I98496276"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055538829","display_name":"Regina Costa de Oliveira","orcid":"https://orcid.org/0000-0002-2446-5510"},"institutions":[{"id":"https://openalex.org/I98496276","display_name":"Universidade de Mogi das Cruzes","ror":"https://ror.org/04hnrs676","country_code":"BR","type":"education","lineage":["https://openalex.org/I98496276"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Regina Costa de Oliveira","raw_affiliation_strings":["N\u00facleo Integrado de Biotecnologia, Universidade de Mogi das Cruzes (UMC), Mogi das Cruzes, SP, Brazil"],"affiliations":[{"raw_affiliation_string":"N\u00facleo Integrado de Biotecnologia, Universidade de Mogi das Cruzes (UMC), Mogi das Cruzes, SP, Brazil","institution_ids":["https://openalex.org/I98496276"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035048985","display_name":"Luiz R. Nunes","orcid":"https://orcid.org/0000-0001-9619-269X"},"institutions":[{"id":"https://openalex.org/I71715416","display_name":"Universidade Federal do ABC","ror":"https://ror.org/028kg9j04","country_code":"BR","type":"education","lineage":["https://openalex.org/I71715416"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Luiz R Nunes","raw_affiliation_strings":["Centro de Ci\u00eancias Naturais e Humanas, Universidade Federal do ABC (UFABC), Santo Andr\u00e9, SP, Brazil"],"affiliations":[{"raw_affiliation_string":"Centro de Ci\u00eancias Naturais e Humanas, Universidade Federal do ABC (UFABC), Santo Andr\u00e9, SP, Brazil","institution_ids":["https://openalex.org/I71715416"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5035048985"],"corresponding_institution_ids":["https://openalex.org/I71715416"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.276,"has_fulltext":false,"cited_by_count":27,"citation_normalized_percentile":{"value":0.79627147,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"34","issue":"3","first_page":"514","last_page":"515"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9664999842643738,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9664999842643738,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/reproducibility","display_name":"Reproducibility","score":0.5588743686676025},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5015528202056885},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3646544814109802},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.333463191986084},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3281041979789734},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.08317247033119202},{"id":"https://openalex.org/keywords/chromatography","display_name":"Chromatography","score":0.05367794632911682}],"concepts":[{"id":"https://openalex.org/C9893847","wikidata":"https://www.wikidata.org/wiki/Q1425625","display_name":"Reproducibility","level":2,"score":0.5588743686676025},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5015528202056885},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3646544814109802},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.333463191986084},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3281041979789734},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.08317247033119202},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.05367794632911682}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btx554","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx554","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/3/514/25117027/btx554.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28968637","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28968637","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btx554","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx554","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/34/3/514/25117027/btx554.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321091","display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior","ror":"https://ror.org/00x0ma614"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2753370921.pdf","grobid_xml":"https://content.openalex.org/works/W2753370921.grobid-xml"},"referenced_works_count":6,"referenced_works":["https://openalex.org/W1488799774","https://openalex.org/W2214694321","https://openalex.org/W2576576365","https://openalex.org/W2589026194","https://openalex.org/W2604622795","https://openalex.org/W4247320707"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2082860237","https://openalex.org/W2413717610","https://openalex.org/W1973270181","https://openalex.org/W2417696084","https://openalex.org/W2368782778","https://openalex.org/W2119695867","https://openalex.org/W2087830269","https://openalex.org/W2130076355","https://openalex.org/W3106281778"],"abstract_inverted_index":{"Luiz.nunes@ufabc.edu.br.":[0]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
