{"id":"https://openalex.org/W2751152975","doi":"https://doi.org/10.1093/bioinformatics/btx538","title":"Kmer-SSR: a fast and exhaustive SSR search algorithm","display_name":"Kmer-SSR: a fast and exhaustive SSR search algorithm","publication_year":2017,"publication_date":"2017-08-29","ids":{"openalex":"https://openalex.org/W2751152975","doi":"https://doi.org/10.1093/bioinformatics/btx538","mag":"2751152975","pmid":"https://pubmed.ncbi.nlm.nih.gov/28968741"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btx538","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx538","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/24/3922/25168467/btx538.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/33/24/3922/25168467/btx538.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036262786","display_name":"Brandon D. Pickett","orcid":"https://orcid.org/0000-0001-8235-4440"},"institutions":[{"id":"https://openalex.org/I4210095288","display_name":"Provo College","ror":"https://ror.org/00y3pb435","country_code":"US","type":"education","lineage":["https://openalex.org/I4210095288"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brandon D Pickett","raw_affiliation_strings":["Department of Biology, BYU, Provo, UT, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biology, BYU, Provo, UT, USA","institution_ids":["https://openalex.org/I4210095288"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089489035","display_name":"Justin Miller","orcid":"https://orcid.org/0000-0002-5309-1570"},"institutions":[{"id":"https://openalex.org/I4210095288","display_name":"Provo College","ror":"https://ror.org/00y3pb435","country_code":"US","type":"education","lineage":["https://openalex.org/I4210095288"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Justin B Miller","raw_affiliation_strings":["Department of Biology, BYU, Provo, UT, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biology, BYU, Provo, UT, USA","institution_ids":["https://openalex.org/I4210095288"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046268336","display_name":"Perry G. Ridge","orcid":"https://orcid.org/0000-0001-6944-2753"},"institutions":[{"id":"https://openalex.org/I4210095288","display_name":"Provo College","ror":"https://ror.org/00y3pb435","country_code":"US","type":"education","lineage":["https://openalex.org/I4210095288"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Perry G Ridge","raw_affiliation_strings":["Department of Biology, BYU, Provo, UT, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biology, BYU, Provo, UT, USA","institution_ids":["https://openalex.org/I4210095288"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5046268336"],"corresponding_institution_ids":["https://openalex.org/I4210095288"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.8952,"has_fulltext":false,"cited_by_count":33,"citation_normalized_percentile":{"value":0.73764162,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"33","issue":"24","first_page":"3922","last_page":"3928"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7325176000595093},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6404551267623901},{"id":"https://openalex.org/keywords/heuristic","display_name":"Heuristic","score":0.6323683857917786},{"id":"https://openalex.org/keywords/precision-and-recall","display_name":"Precision and recall","score":0.609420895576477},{"id":"https://openalex.org/keywords/completeness","display_name":"Completeness (order theory)","score":0.5522902011871338},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5447850823402405},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5206969380378723},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4936588704586029},{"id":"https://openalex.org/keywords/filter","display_name":"Filter (signal processing)","score":0.4772624671459198},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4373355507850647},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.43727946281433105},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.42505115270614624},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.33240988850593567},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.29927515983581543},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.13453885912895203},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.12626352906227112},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.06885156035423279},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.06855708360671997}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7325176000595093},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6404551267623901},{"id":"https://openalex.org/C173801870","wikidata":"https://www.wikidata.org/wiki/Q201413","display_name":"Heuristic","level":2,"score":0.6323683857917786},{"id":"https://openalex.org/C81669768","wikidata":"https://www.wikidata.org/wiki/Q2359161","display_name":"Precision and recall","level":2,"score":0.609420895576477},{"id":"https://openalex.org/C17231256","wikidata":"https://www.wikidata.org/wiki/Q5156540","display_name":"Completeness (order theory)","level":2,"score":0.5522902011871338},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5447850823402405},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5206969380378723},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4936588704586029},{"id":"https://openalex.org/C106131492","wikidata":"https://www.wikidata.org/wiki/Q3072260","display_name":"Filter (signal processing)","level":2,"score":0.4772624671459198},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4373355507850647},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.43727946281433105},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.42505115270614624},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.33240988850593567},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.29927515983581543},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.13453885912895203},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.12626352906227112},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.06885156035423279},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.06855708360671997},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018895","descriptor_name":"Microsatellite Repeats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018895","descriptor_name":"Microsatellite Repeats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018895","descriptor_name":"Microsatellite Repeats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btx538","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx538","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/24/3922/25168467/btx538.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28968741","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28968741","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:osti.gov:1625291","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1625291","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:5860095","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5860095","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btx538","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx538","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/24/3922/25168467/btx538.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320309309","display_name":"Brigham Young University","ror":"https://ror.org/047rhhm47"},{"id":"https://openalex.org/F4320316170","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2751152975.pdf","grobid_xml":"https://content.openalex.org/works/W2751152975.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W1526143743","https://openalex.org/W1831946162","https://openalex.org/W1935763178","https://openalex.org/W1984048247","https://openalex.org/W1988581590","https://openalex.org/W2011685215","https://openalex.org/W2021795499","https://openalex.org/W2024652192","https://openalex.org/W2026575204","https://openalex.org/W2039752257","https://openalex.org/W2081561808","https://openalex.org/W2104677379","https://openalex.org/W2112814753","https://openalex.org/W2119535370","https://openalex.org/W2153875232","https://openalex.org/W2158148243","https://openalex.org/W2162648887","https://openalex.org/W2390701064","https://openalex.org/W2915007872","https://openalex.org/W4230806689","https://openalex.org/W6640765542","https://openalex.org/W6684180062"],"related_works":["https://openalex.org/W4237277701","https://openalex.org/W2121424666","https://openalex.org/W4301250310","https://openalex.org/W2055420561","https://openalex.org/W2067700950","https://openalex.org/W1669998927","https://openalex.org/W3162039195","https://openalex.org/W2071225893","https://openalex.org/W4250321999","https://openalex.org/W3081644756"],"abstract_inverted_index":{"perry.ridge@byu.edu.":[0]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
