{"id":"https://openalex.org/W2727880816","doi":"https://doi.org/10.1093/bioinformatics/btx443","title":"DynaPho: a web platform for inferring the dynamics of time-series phosphoproteomics","display_name":"DynaPho: a web platform for inferring the dynamics of time-series phosphoproteomics","publication_year":2017,"publication_date":"2017-07-06","ids":{"openalex":"https://openalex.org/W2727880816","doi":"https://doi.org/10.1093/bioinformatics/btx443","mag":"2727880816","pmid":"https://pubmed.ncbi.nlm.nih.gov/29036526"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btx443","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx443","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/22/3664/25167650/btx443.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/33/22/3664/25167650/btx443.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033886049","display_name":"Chia\u2010Lang Hsu","orcid":"https://orcid.org/0000-0002-7447-8045"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chia-Lang Hsu","raw_affiliation_strings":["Department of Life Science, National Taiwan University, Taipei, Taiwan"],"affiliations":[{"raw_affiliation_string":"Department of Life Science, National Taiwan University, Taipei, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109342115","display_name":"Jian-Kai Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Jian-Kai Wang","raw_affiliation_strings":["Genome and Systems Biology Degree Program, National Taiwan University, Taipei, Taiwan"],"affiliations":[{"raw_affiliation_string":"Genome and Systems Biology Degree Program, National Taiwan University, Taipei, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059697476","display_name":"Pei-Chun Lu","orcid":null},"institutions":[{"id":"https://openalex.org/I96323854","display_name":"National Yang Ming Chiao Tung University","ror":null,"country_code":"TW","type":null,"lineage":["https://openalex.org/I96323854"]},{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Pei-Chun Lu","raw_affiliation_strings":["Institute of Biomedical Informatics, National Yang-Ming University, Taipei, Taiwan"],"affiliations":[{"raw_affiliation_string":"Institute of Biomedical Informatics, National Yang-Ming University, Taipei, Taiwan","institution_ids":["https://openalex.org/I148366613","https://openalex.org/I96323854"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049081893","display_name":"Hsuan\u2010Cheng Huang","orcid":"https://orcid.org/0000-0002-3386-0934"},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]},{"id":"https://openalex.org/I96323854","display_name":"National Yang Ming Chiao Tung University","ror":null,"country_code":"TW","type":null,"lineage":["https://openalex.org/I96323854"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Hsuan-Cheng Huang","raw_affiliation_strings":["Institute of Biomedical Informatics, National Yang-Ming University, Taipei, Taiwan"],"affiliations":[{"raw_affiliation_string":"Institute of Biomedical Informatics, National Yang-Ming University, Taipei, Taiwan","institution_ids":["https://openalex.org/I148366613","https://openalex.org/I96323854"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052313712","display_name":"Hsueh\u2010Fen Juan","orcid":"https://orcid.org/0000-0003-4876-3309"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Hsueh-Fen Juan","raw_affiliation_strings":["Department of Life Science, National Taiwan University, Taipei, Taiwan","Genome and Systems Biology Degree Program, National Taiwan University, Taipei, Taiwan","Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University, Taipei, Taiwan","Institute of Molecular and Cellular Biology, National Taiwan University, Taipei, Taiwan"],"affiliations":[{"raw_affiliation_string":"Department of Life Science, National Taiwan University, Taipei, Taiwan","institution_ids":["https://openalex.org/I16733864"]},{"raw_affiliation_string":"Genome and Systems Biology Degree Program, National Taiwan University, Taipei, Taiwan","institution_ids":["https://openalex.org/I16733864"]},{"raw_affiliation_string":"Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University, Taipei, Taiwan","institution_ids":["https://openalex.org/I16733864"]},{"raw_affiliation_string":"Institute of Molecular and Cellular Biology, National Taiwan University, Taipei, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5049081893","https://openalex.org/A5052313712"],"corresponding_institution_ids":["https://openalex.org/I148366613","https://openalex.org/I16733864","https://openalex.org/I96323854"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.0125,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.72049248,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"33","issue":"22","first_page":"3664","last_page":"3666"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phosphoproteomics","display_name":"Phosphoproteomics","score":0.9790115356445312},{"id":"https://openalex.org/keywords/bottleneck","display_name":"Bottleneck","score":0.8660563230514526},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6998713612556458},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.45317158102989197},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.4176098704338074},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.41030627489089966},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.39923667907714844},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.33575400710105896},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21645715832710266},{"id":"https://openalex.org/keywords/kinase","display_name":"Kinase","score":0.14751261472702026},{"id":"https://openalex.org/keywords/protein-kinase-a","display_name":"Protein kinase A","score":0.10550293326377869},{"id":"https://openalex.org/keywords/embedded-system","display_name":"Embedded system","score":0.07388845086097717}],"concepts":[{"id":"https://openalex.org/C6675166","wikidata":"https://www.wikidata.org/wiki/Q7187538","display_name":"Phosphoproteomics","level":5,"score":0.9790115356445312},{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.8660563230514526},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6998713612556458},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.45317158102989197},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.4176098704338074},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.41030627489089966},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.39923667907714844},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.33575400710105896},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21645715832710266},{"id":"https://openalex.org/C184235292","wikidata":"https://www.wikidata.org/wiki/Q421851","display_name":"Kinase","level":2,"score":0.14751261472702026},{"id":"https://openalex.org/C97029542","wikidata":"https://www.wikidata.org/wiki/Q281417","display_name":"Protein kinase A","level":3,"score":0.10550293326377869},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.07388845086097717},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C87325107","wikidata":"https://www.wikidata.org/wiki/Q7251493","display_name":"Protein phosphorylation","level":4,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btx443","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx443","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/22/3664/25167650/btx443.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29036526","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29036526","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btx443","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btx443","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/33/22/3664/25167650/btx443.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1797537078","display_name":null,"funder_award_id":"MOST 102-2628-B-002-041-MY3","funder_id":"https://openalex.org/F4320309618","funder_display_name":"Ministry of Science and Technology"},{"id":"https://openalex.org/G3610828531","display_name":null,"funder_award_id":"MOST 105-2320-B-002-057-MY3","funder_id":"https://openalex.org/F4320309618","funder_display_name":"Ministry of Science and Technology"},{"id":"https://openalex.org/G3723412396","display_name":null,"funder_award_id":"MOST 104-2628-E-010-001-MY3","funder_id":"https://openalex.org/F4320309618","funder_display_name":"Ministry of Science and Technology"},{"id":"https://openalex.org/G4186885371","display_name":null,"funder_award_id":"MOST 103-2320-B-010-031-MY3","funder_id":"https://openalex.org/F4320309618","funder_display_name":"Ministry of Science and Technology"},{"id":"https://openalex.org/G8279043506","display_name":null,"funder_award_id":"MOST 105-2634-E-002-002","funder_id":"https://openalex.org/F4320309618","funder_display_name":"Ministry of Science and Technology"}],"funders":[{"id":"https://openalex.org/F4320309618","display_name":"Ministry of Science and Technology","ror":"https://ror.org/02b207r52"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2727880816.pdf","grobid_xml":"https://content.openalex.org/works/W2727880816.grobid-xml"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W1593111894","https://openalex.org/W1830455854","https://openalex.org/W1980639672","https://openalex.org/W2031028006","https://openalex.org/W2050040190","https://openalex.org/W2107249189","https://openalex.org/W2122539623","https://openalex.org/W2164172395","https://openalex.org/W2175830459"],"related_works":["https://openalex.org/W2131940178","https://openalex.org/W4360804067","https://openalex.org/W2346694641","https://openalex.org/W1969861852","https://openalex.org/W3198829668","https://openalex.org/W2162173224","https://openalex.org/W4385855747","https://openalex.org/W2951583018","https://openalex.org/W2170015710","https://openalex.org/W2791126486"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
